Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhodotorula_20toruloides_20[genbank_20GCA_5F000988805.1_202015-05- 06] 245 sequences; 20,278,264 total letters Query= NC_032001.1 Length=327147 Score E Sequences producing significant alignments: (Bits) Value seq186 141 2e-28 seq217 138 2e-27 seq156 138 2e-27 seq222 96.9 7e-15 seq206 96.9 7e-15 seq176 95.1 3e-14 seq198 89.7 1e-12 seq33 87.8 4e-12 >seq186 Length=108833 Score = 141 bits (156), Expect = 2e-28 Identities = 146/191 (76%), Gaps = 0/191 (0%) Strand=Plus/Plus Query 282909 TCTTTTTGGATGTTGTAGTCAGCAAGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAG 282968 || || ||||||||||| || | ||| || || |||||||| || || ||||| || ||| Sbjct 60758 TCCTTCTGGATGTTGTAATCCGAAAGAGTACGACCATCCTCGAGCTGCTTCCCCGCGAAG 60817 Query 282969 ATCAAACGTTGTTGGTCACCCGGAATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGTA 283028 ||||| || || ||||| || || ||||||||||| || ||||| || || || | Sbjct 60818 ATCAAGCGCTGCTGGTCGGGAGGGATGCCCTCCTTGTCCTGAATCTTGGCCTTGACATTG 60877 Query 283029 TCGATAGTGTCCGAAGCTTCGACTTCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAACG 283088 ||||| |||||||| | || || ||||| ||||| ||||| || || | ||||| ||| Sbjct 60878 TCGATCGTGTCCGACGACTCAACCTCGAGGGTGATGGTCTTGCCGGTGAGGGTCTTGACG 60937 Query 283089 AATATCTGCAT 283099 || |||||||| Sbjct 60938 AAGATCTGCAT 60948 Score = 129 bits (142), Expect = 1e-24 Identities = 122/156 (78%), Gaps = 0/156 (0%) Strand=Plus/Plus Query 282909 TCTTTTTGGATGTTGTAGTCAGCAAGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAG 282968 ||||| ||||||||||| || | ||| || || || ||||| || || ||||| || ||| Sbjct 60175 TCTTTCTGGATGTTGTAATCCGAAAGAGTACGACCGTCCTCGAGCTGCTTCCCCGCGAAG 60234 Query 282969 ATCAAACGTTGTTGGTCACCCGGAATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGTA 283028 ||||| || || ||||| ||||| ||||||||||| || ||||| || || ||| | Sbjct 60235 ATCAAGCGCTGCTGGTCGGGAGGAATGCCCTCCTTGTCCTGAATCTTGGCCTTGACGTTG 60294 Query 283029 TCGATAGTGTCCGAAGCTTCGACTTCGAGAGTGATC 283064 ||||| |||||||| | ||||| ||||| |||||| Sbjct 60295 TCGATCGTGTCCGACGACTCGACCTCGAGGGTGATC 60330 Score = 125 bits (138), Expect = 1e-23 Identities = 122/157 (78%), Gaps = 0/157 (0%) Strand=Plus/Plus Query 282908 TTCTTTTTGGATGTTGTAGTCAGCAAGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAA 282967 ||| ||||| |||||||| || ||||||||| || ||||| || || ||||| || || Sbjct 59874 TTCCTTTTGAATGTTGTAATCTTGAAGCGTGCGTCCGTCCTCAAGCTGCTTCCCCGCGAA 59933 Query 282968 GATCAAACGTTGTTGGTCACCCGGAATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGT 283027 |||||| || || ||||| ||| || ||||||||||| || ||||| || || ||| | Sbjct 59934 GATCAAGCGCTGCTGGTCGGGCGGGATGCCCTCCTTGTCCTGAATCTTGGCCTTGACGTT 59993 Query 283028 ATCGATAGTGTCCGAAGCTTCGACTTCGAGAGTGATC 283064 ||||| ||||| || | ||||| ||||| |||||| Sbjct 59994 GTCGATCGTGTCGGACGACTCGACCTCGAGGGTGATC 60030 Score = 111 bits (122), Expect = 3e-19 Identities = 118/156 (76%), Gaps = 0/156 (0%) Strand=Plus/Plus Query 282909 TCTTTTTGGATGTTGTAGTCAGCAAGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAG 282968 || || |||| ||| ||||| | ||| || || |||||||| || || ||||| || ||| Sbjct 60466 TCCTTCTGGACGTTATAGTCCGAAAGAGTACGACCATCCTCGAGCTGCTTCCCCGCGAAG 60525 Query 282969 ATCAAACGTTGTTGGTCACCCGGAATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGTA 283028 ||||| || || ||||| || || ||||||||||| |||||||| || || ||| | Sbjct 60526 ATCAAGCGCTGCTGGTCGGGAGGGATTCCCTCCTTGTCCTGGATCTTGGCCTTGACGTTG 60585 Query 283029 TCGATAGTGTCCGAAGCTTCGACTTCGAGAGTGATC 283064 || || ||||| || | || || ||||| |||||| Sbjct 60586 TCAATCGTGTCAGACGACTCAACCTCGAGGGTGATC 60621 >seq217 Length=194401 Score = 138 bits (152), Expect = 2e-27 Identities = 124/156 (79%), Gaps = 0/156 (0%) Strand=Plus/Minus Query 282909 TCTTTTTGGATGTTGTAGTCAGCAAGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAG 282968 || || || ||||||||||||| ||| |||||||| ||||| || || || ||||||||| Sbjct 61180 TCCTTCTGAATGTTGTAGTCAGAAAGAGTGCGGCCGTCCTCGAGCTGCTTGCCGGCAAAG 61121 Query 282969 ATCAAACGTTGTTGGTCACCCGGAATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGTA 283028 || | || || |||||| || || ||||||||||| |||||||| || || ||| | Sbjct 61120 ATGAGGCGCTGCTGGTCAGGGGGGATGCCCTCCTTGTCCTGGATCTTGGCCTTGACGTTG 61061 Query 283029 TCGATAGTGTCCGAAGCTTCGACTTCGAGAGTGATC 283064 ||||| |||||||| | ||||| ||||| |||||| Sbjct 61060 TCGATCGTGTCCGACGACTCGACCTCGAGGGTGATC 61025 >seq156 Length=1186 Score = 138 bits (152), Expect = 2e-27 Identities = 144/189 (76%), Gaps = 0/189 (0%) Strand=Plus/Plus Query 282873 CCACCACGCAGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAGCA 282932 ||||| || || ||||| ||||| || | ||| || || || ||||| ||||| Sbjct 199 CCACCGCGGAGACGAAGCACCAGGTGCAGCGTCGACTCCTTCTGAATGTTATAGTCGCTG 258 Query 282933 AGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGGA 282992 |||||||| || ||||| || || || ||||| |||||||| || || |||||| |||| Sbjct 259 AGCGTGCGCCCGTCCTCAAGCTGCTTGCCGGCGAAGATCAAGCGCTGCTGGTCAGGCGGA 318 Query 282993 ATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGTATCGATAGTGTCCGAAGCTTCGACT 283052 || ||||||||||| |||||||| || || ||| | ||||| |||||||| | |||||| Sbjct 319 ATGCCCTCCTTGTCCTGGATCTTGGCCTTGACGTTGTCGATGGTGTCCGACGACTCGACT 378 Query 283053 TCGAGAGTG 283061 ||| ||| Sbjct 379 GTGAGCGTG 387 >seq222 Length=148624 Score = 96.9 bits (106), Expect = 7e-15 Identities = 113/153 (74%), Gaps = 0/153 (0%) Strand=Plus/Plus Query 282872 ACCACCACGCAGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAGC 282931 |||||| || || || || || || || | || || || |||||||||||||| | Sbjct 94937 ACCACCGCGAAGACGGAGGACGAGGTGGAGGGTCGACTCCTTCTGGATGTTGTAGTCCGA 94996 Query 282932 AAGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGG 282991 || |||||||| ||||| || || || || || |||||||| || || ||||| || Sbjct 94997 GAGAGTGCGGCCGTCCTCGAGCTGCTTGCCCGCGAAGATCAAGCGCTGCTGGTCGGGGGG 95056 Query 282992 AATACCCTCCTTGTCTTGGATCTTTGCTTTTAC 283024 || ||||||||||| |||||||| || || || Sbjct 95057 GATGCCCTCCTTGTCCTGGATCTTGGCCTTGAC 95089 >seq206 Length=411018 Score = 96.9 bits (106), Expect = 7e-15 Identities = 115/156 (74%), Gaps = 0/156 (0%) Strand=Plus/Plus Query 282909 TCTTTTTGGATGTTGTAGTCAGCAAGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAG 282968 || || | |||||||||||| | | | ||| ||| || ||||| ||||| || ||| Sbjct 70355 TCGTTCTCGATGTTGTAGTCGCCGACTGCGCGATGATCTTCGAGTTGCTTCCCTGCGAAG 70414 Query 282969 ATCAAACGTTGTTGGTCACCCGGAATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGTA 283028 ||||| || || ||||| ||| || ||||||||||| ||| |||| | || ||| Sbjct 70415 ATCAAGCGCTGCTGGTCGGGCGGGATGCCCTCCTTGTCCTGGGTCTTGACCTTGACGTCG 70474 Query 283029 TCGATAGTGTCCGAAGCTTCGACTTCGAGAGTGATC 283064 | ||| |||||||| | ||||| ||||| |||||| Sbjct 70475 TAGATTGTGTCCGACGACTCGACCTCGAGCGTGATC 70510 >seq176 Length=250200 Score = 95.1 bits (104), Expect = 3e-14 Identities = 112/152 (74%), Gaps = 0/152 (0%) Strand=Plus/Plus Query 282913 TTTGGATGTTGTAGTCAGCAAGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCA 282972 |||| | |||||||| | |||||||||| ||||| || || ||||| || || || | Sbjct 112826 TTTGAACCTTGTAGTCTTCGAGCGTGCGGCTGTCCTCGAGCTGCTTCCCCGCGAACATGA 112885 Query 282973 AACGTTGTTGGTCACCCGGAATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGTATCGA 283032 || || ||||| || || ||||||||||| |||||||| || || ||| | |||| Sbjct 112886 GCCGCTGCTGGTCGGGAGGGATGCCCTCCTTGTCCTGGATCTTGGCCTTGACGATGTCGA 112945 Query 283033 TAGTGTCCGAAGCTTCGACTTCGAGAGTGATC 283064 | ||| || | | ||| |||||||||||| Sbjct 112946 TCGTGCTGGAGGACTTGACATCGAGAGTGATC 112977 >seq198 Length=50111 Score = 89.7 bits (98), Expect = 1e-12 Identities = 131/183 (72%), Gaps = 2/183 (1%) Strand=Plus/Plus Query 273777 TTCGTGAAAATGTACCTGGCACTCGCATGGTCCTTGCCACCTTGCAGCCTCGAACCAAAC 273836 || ||||| ||||| | ||| || || ||||||||| ||||| || | || ||| ||| Sbjct 13721 TTTGTGAAGATGTAACGGGCGCTGGCCGCGTCCTTGCCGCCTTGAAGACGCGTACCGAAC 13780 Query 273837 TGACCCT-CGGGCAGTAGCCAGTTTATGTTGTTGCTACCGACGTAATCCTGAGCCATATT 273895 || || | |||| | ||| ||| ||||||||||| |||||| | | ||| || | Sbjct 13781 TGGCCGTTCGGGTCG-AGCACGTTGATGTTGTTGCTGCCGACGAAGTTCTGCGCGAGGCC 13839 Query 273896 CACGATAGTCCCCTGAAGGGATACCTCGCCGTGGTGATAGGCGCTGTGTTCGGCGATATA 273955 ||||| || ||||| || || | ||||||||||| || || ||| || | ||| || Sbjct 13840 GACGATCGTGCCCTGGAGCGAGGCGTCGCCGTGGTGGTACGCCGAGTGCTCCGAGATGTA 13899 Query 273956 ACC 273958 || Sbjct 13900 GCC 13902 >seq33 Length=99298 Score = 87.8 bits (96), Expect = 4e-12 Identities = 89/116 (77%), Gaps = 0/116 (0%) Strand=Plus/Plus Query 282909 TCTTTTTGGATGTTGTAGTCAGCAAGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAG 282968 ||||| ||||||||||| || | ||| || || || ||||| || || ||||| || ||| Sbjct 230 TCTTTCTGGATGTTGTAATCCGAAAGAGTACGACCGTCCTCGAGCTGCTTCCCCGCGAAG 289 Query 282969 ATCAAACGTTGTTGGTCACCCGGAATACCCTCCTTGTCTTGGATCTTTGCTTTTAC 283024 || | ||| || ||||| || || ||||||||||| |||||||| || || || Sbjct 290 ATGAGACGCTGCTGGTCGGGAGGGATGCCCTCCTTGTCCTGGATCTTGGCCTTAAC 345 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1046735914220230