Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhodotorula_20toruloides_20[genbank_20GCA_5F000988805.1_202015-05- 06] 245 sequences; 20,278,264 total letters Query= NC_033780.1 Length=144510 Score E Sequences producing significant alignments: (Bits) Value seq156 147 2e-30 seq186 123 2e-23 seq222 118 1e-21 seq217 109 5e-19 seq176 91.5 1e-13 seq33 91.5 1e-13 seq212 87.8 2e-12 seq23 86.0 6e-12 >seq156 Length=1186 Score = 147 bits (162), Expect = 2e-30 Identities = 119/144 (83%), Gaps = 0/144 (0%) Strand=Plus/Plus Query 41635 GCCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGA 41694 ||| ||||| ||||| | |||||| |||||||| |||||||||||||||||||||| Sbjct 198 GCCACCGCGGAGACGAAGCACCAGGTGCAGCGTCGACTCCTTCTGAATGTTATAGTCGCT 257 Query 41695 GAGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGG 41754 ||| |||||| |||| || ||||||||||||||||| |||| |||||| ||||| | || Sbjct 258 GAGCGTGCGCCCGTCCTCAAGCTGCTTGCCGGCGAAGATCAAGCGCTGCTGGTCAGGCGG 317 Query 41755 AACGCTCTCCTTGTCCATGATTTT 41778 || || |||||||||| ||| || Sbjct 318 AATGCCCTCCTTGTCCTGGATCTT 341 >seq186 Length=108833 Score = 123 bits (136), Expect = 2e-23 Identities = 167/230 (73%), Gaps = 2/230 (1%) Strand=Plus/Plus Query 41635 GCCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGA 41694 ||| ||||| ||||| | ||| || || || || ||||||||| ||||| || || || Sbjct 60721 GCCTCCGCGGAGACGCAGCACGAGGTGAAGGGTCGACTCCTTCTGGATGTTGTAATCCGA 60780 Query 41695 GAGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGG 41754 || || || | || ||||||||||| || ||||| |||| |||||| ||||| | || Sbjct 60781 AAGAGTACGACCATCCTCGAGCTGCTTCCCCGCGAAGATCAAGCGCTGCTGGTCGGGAGG 60840 Query 41755 AACGCTCTCCTTGTCCATGATTTTTTGCTTCAACGACGAC-ACAGTGTCGCTCGACTCCA 41813 | || |||||||||| ||| | || || | || | | | ||||| |||||| | Sbjct 60841 GATGCCCTCCTTGTCC-TGAATCTTGGCCTTGACATTGTCGATCGTGTCCGACGACTCAA 60899 Query 41814 CCTCCACCGTTATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCATG 41863 |||| | || || || || || || || ||||| ||||| ||||||||| Sbjct 60900 CCTCGAGGGTGATGGTCTTGCCGGTGAGGGTCTTGACGAAGATCTGCATG 60949 Score = 104 bits (114), Expect = 2e-17 Identities = 135/184 (73%), Gaps = 2/184 (1%) Strand=Plus/Plus Query 41635 GCCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGA 41694 ||| ||||| ||||| | ||| || || || || ||| ||||| ||||| || || || Sbjct 60138 GCCTCCGCGGAGACGCAGCACGAGGTGGAGGGTCGACTCTTTCTGGATGTTGTAATCCGA 60197 Query 41695 GAGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGG 41754 || || || |||| ||||||||||| || ||||| |||| |||||| ||||| | || Sbjct 60198 AAGAGTACGACCGTCCTCGAGCTGCTTCCCCGCGAAGATCAAGCGCTGCTGGTCGGGAGG 60257 Query 41755 AACGCTCTCCTTGTCCATGATTTTTTGCTTCAACGACGAC-ACAGTGTCGCTCGACTCCA 41813 || || |||||||||| ||| | || || | ||| | | | ||||| |||||| | Sbjct 60258 AATGCCCTCCTTGTCC-TGAATCTTGGCCTTGACGTTGTCGATCGTGTCCGACGACTCGA 60316 Query 41814 CCTC 41817 |||| Sbjct 60317 CCTC 60320 Score = 98.7 bits (108), Expect = 9e-16 Identities = 108/144 (75%), Gaps = 0/144 (0%) Strand=Plus/Plus Query 41635 GCCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGA 41694 ||| ||||| ||||| | ||| || || || || ||||||||| | ||||||||| || Sbjct 60429 GCCTCCGCGGAGACGCAGCACGAGGTGAAGGGTCGACTCCTTCTGGACGTTATAGTCCGA 60488 Query 41695 GAGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGG 41754 || || || | || ||||||||||| || ||||| |||| |||||| ||||| | || Sbjct 60489 AAGAGTACGACCATCCTCGAGCTGCTTCCCCGCGAAGATCAAGCGCTGCTGGTCGGGAGG 60548 Query 41755 AACGCTCTCCTTGTCCATGATTTT 41778 | | |||||||||| ||| || Sbjct 60549 GATTCCCTCCTTGTCCTGGATCTT 60572 >seq222 Length=148624 Score = 118 bits (130), Expect = 1e-21 Identities = 112/143 (78%), Gaps = 0/143 (0%) Strand=Plus/Plus Query 41636 CCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAG 41695 || ||||| ||||| | || || || || || ||||||||| ||||| ||||| ||| Sbjct 94938 CCACCGCGAAGACGGAGGACGAGGTGGAGGGTCGACTCCTTCTGGATGTTGTAGTCCGAG 94997 Query 41696 AGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGA 41755 || ||||| |||| |||||||||||||| ||||| |||| |||||| ||||| | ||| Sbjct 94998 AGAGTGCGGCCGTCCTCGAGCTGCTTGCCCGCGAAGATCAAGCGCTGCTGGTCGGGGGGG 95057 Query 41756 ACGCTCTCCTTGTCCATGATTTT 41778 | || |||||||||| ||| || Sbjct 95058 ATGCCCTCCTTGTCCTGGATCTT 95080 >seq217 Length=194401 Score = 109 bits (120), Expect = 5e-19 Identities = 89/108 (82%), Gaps = 0/108 (0%) Strand=Plus/Minus Query 41671 CTCCTTCTGAATGTTATAGTCGGAGAGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAA 41730 ||||||||||||||| ||||| || || ||||| |||| ||||||||||||||||| || Sbjct 61181 CTCCTTCTGAATGTTGTAGTCAGAAAGAGTGCGGCCGTCCTCGAGCTGCTTGCCGGCAAA 61122 Query 41731 TATCAGGCGCTGTTGGTCCGCGGGAACGCTCTCCTTGTCCATGATTTT 41778 || |||||||| ||||| | ||| | || |||||||||| ||| || Sbjct 61121 GATGAGGCGCTGCTGGTCAGGGGGGATGCCCTCCTTGTCCTGGATCTT 61074 >seq176 Length=250200 Score = 91.5 bits (100), Expect = 1e-13 Identities = 107/145 (74%), Gaps = 0/145 (0%) Strand=Plus/Plus Query 41634 CGCCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGG 41693 ||||||||||||| || || || ||||| || || ||| | |||| || ||||| Sbjct 112784 CGCCGCCGCGTAGGCGCAAGACGAGATGAAGGGTCGAATCCCTTTGAACCTTGTAGTCTT 112843 Query 41694 AGAGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGG 41753 ||| ||||| ||| ||||||||||| || ||||| || || ||||| ||||| | | Sbjct 112844 CGAGCGTGCGGCTGTCCTCGAGCTGCTTCCCCGCGAACATGAGCCGCTGCTGGTCGGGAG 112903 Query 41754 GAACGCTCTCCTTGTCCATGATTTT 41778 | | || |||||||||| ||| || Sbjct 112904 GGATGCCCTCCTTGTCCTGGATCTT 112928 >seq33 Length=99298 Score = 91.5 bits (100), Expect = 1e-13 Identities = 106/143 (74%), Gaps = 0/143 (0%) Strand=Plus/Plus Query 41636 CCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAG 41695 || ||||| ||||| | ||| || || || || ||| ||||| ||||| || || || Sbjct 194 CCTCCGCGGAGACGCAGCACGAGGTGGAGGGTCGACTCTTTCTGGATGTTGTAATCCGAA 253 Query 41696 AGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGA 41755 || || || |||| ||||||||||| || ||||| || || ||||| ||||| | || Sbjct 254 AGAGTACGACCGTCCTCGAGCTGCTTCCCCGCGAAGATGAGACGCTGCTGGTCGGGAGGG 313 Query 41756 ACGCTCTCCTTGTCCATGATTTT 41778 | || |||||||||| ||| || Sbjct 314 ATGCCCTCCTTGTCCTGGATCTT 336 >seq212 Length=194347 Score = 87.8 bits (96), Expect = 2e-12 Identities = 107/146 (73%), Gaps = 0/146 (0%) Strand=Plus/Plus Query 41631 CACCGCCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGT 41690 |||| |||||||| || || | || ||| ||||||||| || | | | || | Sbjct 23363 CACCCCCGCCGCGCAGGCGCAGCAGCAGGTGCAGCGTGGCATCACGCGCGACGCAGTACT 23422 Query 41691 CGGAGAGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCG 41750 ||| ||||||||| |||| || |||||||||||| |||| | |||||||| ||||| | Sbjct 23423 CGGCGAGGGTGCGGGCGTCCTCCAGCTGCTTGCCGCCGAACAAGAGGCGCTGCTGGTCAG 23482 Query 41751 CGGGAACGCTCTCCTTGTCCATGATT 41776 || | || |||||||||| |||| Sbjct 23483 GCGGGATGCCCTCCTTGTCCTGGATT 23508 >seq23 Length=256788 Score = 86.0 bits (94), Expect = 6e-12 Identities = 100/135 (74%), Gaps = 0/135 (0%) Strand=Plus/Minus Query 41635 GCCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGA 41694 |||||| || ||||| ||||||| || | || | | ||| ||||| ||||| || Sbjct 195673 GCCGCCCCGCAGACGGAACACCATCTGGATGGTAGTGTTGCGCTGGATGTTGTAGTCCGA 195614 Query 41695 GAGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGG 41754 ||| || || | || ||||||||||||| |||| ||||||||||| ||||| || || Sbjct 195613 GAGCGTACGTCCATCTTCGAGCTGCTTGCGCTCGAAGATCAGGCGCTGCTGGTCGGCCGG 195554 Query 41755 AACGCTCTCCTTGTC 41769 || || | |||||| Sbjct 195553 AATGCCCAGCTTGTC 195539 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 462302584194000