Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhodotorula_20toruloides_20[genbank_20GCA_5F000988875.1_202015-05- 06] 218 sequences; 20,361,044 total letters Query= NC_000852.5 Length=330611 Score E Sequences producing significant alignments: (Bits) Value seq175 111 3e-19 seq208 104 5e-17 seq192 104 5e-17 seq186 104 5e-17 seq163 104 5e-17 seq139 104 5e-17 seq52 104 5e-17 seq165 87.8 4e-12 >seq175 Length=283523 Score = 111 bits (122), Expect = 3e-19 Identities = 152/210 (72%), Gaps = 2/210 (1%) Strand=Plus/Plus Query 230383 CAAATCATTACAGAAGCAGTTGAAAACGAAAAGGAGTTCATTTGTGACGCTATTCCATGT 230442 |||||||| | ||||| || || | ||| |||| ||| | ||||| | || || Sbjct 258493 CAAATCATCGCCGAAGCCGTCGAGATCGAGCAGGAATTCCTGACGGACGCCTTGCCC-GT 258551 Query 230443 CGCCTT-ATTGGCATGAACGCTGAACTTATGGGACAGTACATCGAATTCGTAGCCGACCG 230501 || ||| || ||||||||||| || ||| ||||||||||||| ||||| || ||||| Sbjct 258552 CGGCTTGATCGGCATGAACGCGACCCTCATGCGACAGTACATCGAGTTCGTCGCGGACCG 258611 Query 230502 CATTTTTGTTGCACTTGGTTACGAGAAAGTGTACAACTCTAAGAACCCCTTTGCATTTAT 230561 | |||| || ||||| ||||||| ||||||| | ||||||| || | ||||| Sbjct 258612 ATTGCTTGTCGCGCTTGGGAACGAGAAGCTGTACAATGCCGAGAACCCGTTCGACTTTAT 258671 Query 230562 GGAGCTCATTTCGCTTCAAGGGAAGACCAA 230591 |||| | || ||| | | || |||||||| Sbjct 258672 GGAGATGATCTCGATGGAGGGCAAGACCAA 258701 >seq208 Length=337538 Score = 104 bits (114), Expect = 5e-17 Identities = 66/72 (92%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 165710 GCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAGC 165769 ||||| |||||||||||||||||| ||||||| |||||||||||||||||||||||||| Sbjct 71849 GCCCGGTTAGCTCAGTCGGTAGAGCACCAGACTCTTAATCTGGTGGTCGTGGGTTCGAGC 71790 Query 165770 CCCACGATGGGC 165781 ||||| ||||| Sbjct 71789 CCCACATTGGGC 71778 >seq192 Length=246786 Score = 104 bits (114), Expect = 5e-17 Identities = 66/72 (92%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 165710 GCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAGC 165769 ||||| |||||||||||||||||| ||||||| |||||||||||||||||||||||||| Sbjct 134552 GCCCGGTTAGCTCAGTCGGTAGAGCACCAGACTCTTAATCTGGTGGTCGTGGGTTCGAGC 134493 Query 165770 CCCACGATGGGC 165781 ||||| ||||| Sbjct 134492 CCCACATTGGGC 134481 >seq186 Length=34438 Score = 104 bits (114), Expect = 5e-17 Identities = 66/72 (92%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 165710 GCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAGC 165769 ||||| |||||||||||||||||| ||||||| |||||||||||||||||||||||||| Sbjct 624 GCCCGGTTAGCTCAGTCGGTAGAGCACCAGACTCTTAATCTGGTGGTCGTGGGTTCGAGC 565 Query 165770 CCCACGATGGGC 165781 ||||| ||||| Sbjct 564 CCCACATTGGGC 553 >seq163 Length=242995 Score = 104 bits (114), Expect = 5e-17 Identities = 66/72 (92%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 165710 GCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAGC 165769 ||||| |||||||||||||||||| ||||||| |||||||||||||||||||||||||| Sbjct 229725 GCCCGGTTAGCTCAGTCGGTAGAGCACCAGACTCTTAATCTGGTGGTCGTGGGTTCGAGC 229666 Query 165770 CCCACGATGGGC 165781 ||||| ||||| Sbjct 229665 CCCACATTGGGC 229654 Score = 104 bits (114), Expect = 5e-17 Identities = 66/72 (92%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 165710 GCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAGC 165769 ||||| |||||||||||||||||| ||||||| |||||||||||||||||||||||||| Sbjct 242695 GCCCGGTTAGCTCAGTCGGTAGAGCACCAGACTCTTAATCTGGTGGTCGTGGGTTCGAGC 242754 Query 165770 CCCACGATGGGC 165781 ||||| ||||| Sbjct 242755 CCCACATTGGGC 242766 >seq139 Length=271668 Score = 104 bits (114), Expect = 5e-17 Identities = 66/72 (92%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 165710 GCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAGC 165769 ||||| |||||||||||||||||| ||||||| |||||||||||||||||||||||||| Sbjct 92221 GCCCGGTTAGCTCAGTCGGTAGAGCACCAGACTCTTAATCTGGTGGTCGTGGGTTCGAGC 92280 Query 165770 CCCACGATGGGC 165781 ||||| ||||| Sbjct 92281 CCCACATTGGGC 92292 >seq52 Length=42957 Score = 104 bits (114), Expect = 5e-17 Identities = 66/72 (92%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 165710 GCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAGC 165769 ||||| |||||||||||||||||| ||||||| |||||||||||||||||||||||||| Sbjct 38458 GCCCGGTTAGCTCAGTCGGTAGAGCACCAGACTCTTAATCTGGTGGTCGTGGGTTCGAGC 38399 Query 165770 CCCACGATGGGC 165781 ||||| ||||| Sbjct 38398 CCCACATTGGGC 38387 >seq165 Length=391853 Score = 87.8 bits (96), Expect = 4e-12 Identities = 107/146 (73%), Gaps = 0/146 (0%) Strand=Plus/Minus Query 230446 CTTATTGGCATGAACGCTGAACTTATGGGACAGTACATCGAATTCGTAGCCGACCGCATT 230505 || || ||||||||| || || ||| | ||||||||||| || || ||||||||| | Sbjct 47861 CTCATCGGCATGAACAGCGACCTCATGTGCCAGTACATCGAGTTTGTTGCCGACCGCTTG 47802 Query 230506 TTTGTTGCACTTGGTTACGAGAAAGTGTACAACTCTAAGAACCCCTTTGCATTTATGGAG 230565 |||| |||||||| ||||||| | ||| || ||||||| || | || |||||| Sbjct 47801 CTTGTCGCACTTGGCAACGAGAAGATCTACCACAAGGAGAACCCGTTCGACTTCATGGAG 47742 Query 230566 CTCATTTCGCTTCAAGGGAAGACCAA 230591 | || ||| | | || |||||||| Sbjct 47741 ATGATCTCGATGGAGGGCAAGACCAA 47716 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1057821045365340