Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Rhodotorula_20toruloides_20[genbank_20GCA_5F000988875.1_202015-05-
06] 218 sequences; 20,361,044 total letters
Query= NC_000852.5
Length=330611
Score E
Sequences producing significant alignments: (Bits) Value
seq175 111 3e-19
seq208 104 5e-17
seq192 104 5e-17
seq186 104 5e-17
seq163 104 5e-17
seq139 104 5e-17
seq52 104 5e-17
seq165 87.8 4e-12
>seq175
Length=283523
Score = 111 bits (122), Expect = 3e-19
Identities = 152/210 (72%), Gaps = 2/210 (1%)
Strand=Plus/Plus
Query 230383 CAAATCATTACAGAAGCAGTTGAAAACGAAAAGGAGTTCATTTGTGACGCTATTCCATGT 230442
|||||||| | ||||| || || | ||| |||| ||| | ||||| | || ||
Sbjct 258493 CAAATCATCGCCGAAGCCGTCGAGATCGAGCAGGAATTCCTGACGGACGCCTTGCCC-GT 258551
Query 230443 CGCCTT-ATTGGCATGAACGCTGAACTTATGGGACAGTACATCGAATTCGTAGCCGACCG 230501
|| ||| || ||||||||||| || ||| ||||||||||||| ||||| || |||||
Sbjct 258552 CGGCTTGATCGGCATGAACGCGACCCTCATGCGACAGTACATCGAGTTCGTCGCGGACCG 258611
Query 230502 CATTTTTGTTGCACTTGGTTACGAGAAAGTGTACAACTCTAAGAACCCCTTTGCATTTAT 230561
| |||| || ||||| ||||||| ||||||| | ||||||| || | |||||
Sbjct 258612 ATTGCTTGTCGCGCTTGGGAACGAGAAGCTGTACAATGCCGAGAACCCGTTCGACTTTAT 258671
Query 230562 GGAGCTCATTTCGCTTCAAGGGAAGACCAA 230591
|||| | || ||| | | || ||||||||
Sbjct 258672 GGAGATGATCTCGATGGAGGGCAAGACCAA 258701
>seq208
Length=337538
Score = 104 bits (114), Expect = 5e-17
Identities = 66/72 (92%), Gaps = 0/72 (0%)
Strand=Plus/Minus
Query 165710 GCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAGC 165769
||||| |||||||||||||||||| ||||||| ||||||||||||||||||||||||||
Sbjct 71849 GCCCGGTTAGCTCAGTCGGTAGAGCACCAGACTCTTAATCTGGTGGTCGTGGGTTCGAGC 71790
Query 165770 CCCACGATGGGC 165781
||||| |||||
Sbjct 71789 CCCACATTGGGC 71778
>seq192
Length=246786
Score = 104 bits (114), Expect = 5e-17
Identities = 66/72 (92%), Gaps = 0/72 (0%)
Strand=Plus/Minus
Query 165710 GCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAGC 165769
||||| |||||||||||||||||| ||||||| ||||||||||||||||||||||||||
Sbjct 134552 GCCCGGTTAGCTCAGTCGGTAGAGCACCAGACTCTTAATCTGGTGGTCGTGGGTTCGAGC 134493
Query 165770 CCCACGATGGGC 165781
||||| |||||
Sbjct 134492 CCCACATTGGGC 134481
>seq186
Length=34438
Score = 104 bits (114), Expect = 5e-17
Identities = 66/72 (92%), Gaps = 0/72 (0%)
Strand=Plus/Minus
Query 165710 GCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAGC 165769
||||| |||||||||||||||||| ||||||| ||||||||||||||||||||||||||
Sbjct 624 GCCCGGTTAGCTCAGTCGGTAGAGCACCAGACTCTTAATCTGGTGGTCGTGGGTTCGAGC 565
Query 165770 CCCACGATGGGC 165781
||||| |||||
Sbjct 564 CCCACATTGGGC 553
>seq163
Length=242995
Score = 104 bits (114), Expect = 5e-17
Identities = 66/72 (92%), Gaps = 0/72 (0%)
Strand=Plus/Minus
Query 165710 GCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAGC 165769
||||| |||||||||||||||||| ||||||| ||||||||||||||||||||||||||
Sbjct 229725 GCCCGGTTAGCTCAGTCGGTAGAGCACCAGACTCTTAATCTGGTGGTCGTGGGTTCGAGC 229666
Query 165770 CCCACGATGGGC 165781
||||| |||||
Sbjct 229665 CCCACATTGGGC 229654
Score = 104 bits (114), Expect = 5e-17
Identities = 66/72 (92%), Gaps = 0/72 (0%)
Strand=Plus/Plus
Query 165710 GCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAGC 165769
||||| |||||||||||||||||| ||||||| ||||||||||||||||||||||||||
Sbjct 242695 GCCCGGTTAGCTCAGTCGGTAGAGCACCAGACTCTTAATCTGGTGGTCGTGGGTTCGAGC 242754
Query 165770 CCCACGATGGGC 165781
||||| |||||
Sbjct 242755 CCCACATTGGGC 242766
>seq139
Length=271668
Score = 104 bits (114), Expect = 5e-17
Identities = 66/72 (92%), Gaps = 0/72 (0%)
Strand=Plus/Plus
Query 165710 GCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAGC 165769
||||| |||||||||||||||||| ||||||| ||||||||||||||||||||||||||
Sbjct 92221 GCCCGGTTAGCTCAGTCGGTAGAGCACCAGACTCTTAATCTGGTGGTCGTGGGTTCGAGC 92280
Query 165770 CCCACGATGGGC 165781
||||| |||||
Sbjct 92281 CCCACATTGGGC 92292
>seq52
Length=42957
Score = 104 bits (114), Expect = 5e-17
Identities = 66/72 (92%), Gaps = 0/72 (0%)
Strand=Plus/Minus
Query 165710 GCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAGC 165769
||||| |||||||||||||||||| ||||||| ||||||||||||||||||||||||||
Sbjct 38458 GCCCGGTTAGCTCAGTCGGTAGAGCACCAGACTCTTAATCTGGTGGTCGTGGGTTCGAGC 38399
Query 165770 CCCACGATGGGC 165781
||||| |||||
Sbjct 38398 CCCACATTGGGC 38387
>seq165
Length=391853
Score = 87.8 bits (96), Expect = 4e-12
Identities = 107/146 (73%), Gaps = 0/146 (0%)
Strand=Plus/Minus
Query 230446 CTTATTGGCATGAACGCTGAACTTATGGGACAGTACATCGAATTCGTAGCCGACCGCATT 230505
|| || ||||||||| || || ||| | ||||||||||| || || ||||||||| |
Sbjct 47861 CTCATCGGCATGAACAGCGACCTCATGTGCCAGTACATCGAGTTTGTTGCCGACCGCTTG 47802
Query 230506 TTTGTTGCACTTGGTTACGAGAAAGTGTACAACTCTAAGAACCCCTTTGCATTTATGGAG 230565
|||| |||||||| ||||||| | ||| || ||||||| || | || ||||||
Sbjct 47801 CTTGTCGCACTTGGCAACGAGAAGATCTACCACAAGGAGAACCCGTTCGACTTCATGGAG 47742
Query 230566 CTCATTTCGCTTCAAGGGAAGACCAA 230591
| || ||| | | || ||||||||
Sbjct 47741 ATGATCTCGATGGAGGGCAAGACCAA 47716
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1057821045365340
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |