Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Rhodotorula_20toruloides_20[genbank_20GCA_5F000988875.1_202015-05-
06] 218 sequences; 20,361,044 total letters
Query= NC_001973.1
Length=161046
Score E
Sequences producing significant alignments: (Bits) Value
seq207 172 6e-38
seq175 150 2e-31
seq165 132 5e-26
seq215 122 9e-23
seq172 102 8e-17
>seq207
Length=219063
Score = 172 bits (190), Expect = 6e-38
Identities = 177/229 (77%), Gaps = 2/229 (1%)
Strand=Plus/Plus
Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749
||||| || ||||| || || ||||| ||||| ||||||||| |||| ||||| | |
Sbjct 76387 ATGCAGATCTTCGTCAAGACCCTCACCGGCAAGACCATCACCCTCGAGGTCGAGTCTTCG 76446
Query 40750 GACAGCGTGCA-AACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCA 40808
|||| | | | |||| |||||| || |||| ||||| ||||| ||||| | |||||
Sbjct 76447 GACACCATCGACAACG-TCAAGGCCAAGATTCAGGACAAGGAGGGAATCCCTCCCGACCA 76505
Query 40809 GCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 40868
||| || | |||| ||||||||| ||||| || |||| ||||| |||| |||||||||
Sbjct 76506 GCAGCGCTTGATCTTCGCGGGCAAGCAGCTTGAGGACGGTCGCACGCTCAGCGACTACAA 76565
Query 40869 CATCCAGAAGGAGGCCACGCTGCATCTAGTGTTGCGCTTGAGGGGCGGC 40917
||||||||||||| | || || ||||| |||||| | ||| | || |||
Sbjct 76566 CATCCAGAAGGAGTCTACACTCCATCTGGTGTTGAGGTTGCGCGGTGGC 76614
Score = 93.3 bits (102), Expect = 4e-14
Identities = 101/134 (75%), Gaps = 0/134 (0%)
Strand=Plus/Plus
Query 40766 TCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCAGCAACGACTCATCTACG 40825
|||||| || || | ||||| ||||| ||||| | |||||||| || | |||| ||
Sbjct 77190 TCAAGGCTAAGATCCAGGACAAGGAGGGTATCCCTCCCGACCAGCAGCGCTTGATCTTCG 77249
Query 40826 CGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAACATCCAGAAGGAGGCCA 40885
|||| || ||||| || |||| ||||| || || |||||||||||||| ||| | |
Sbjct 77250 CGGGGAAGCAGCTTGAGGACGGACGCACGCTTTCAGATTACAACATCCAGAAAGAGTCTA 77309
Query 40886 CGCTGCATCTAGTG 40899
||||||| || |||
Sbjct 77310 CGCTGCACCTGGTG 77323
>seq175
Length=283523
Score = 150 bits (166), Expect = 2e-31
Identities = 140/178 (79%), Gaps = 0/178 (0%)
Strand=Plus/Plus
Query 116689 GGACCTGTCCAAGGACACGAGCGACTGGGAGCGCTTGAACGACAACGAGCGCCATTTCAT 116748
|||| | || |||||| | | |||||||| || ||| ||||||||||| || |||||
Sbjct 257768 GGACATCTCGAAGGACCTGTGGGACTGGGACCGACTGACGGACAACGAGCGACACTTCAT 257827
Query 116749 CAAGCACGTGCTGGCCTTTTTCGCCGCCAGCGACGGCATCGTCAACGAGAATCTGGTCGA 116808
| |||||| || ||||| |||||||| |||||||||||||||||||| |||| ||
Sbjct 257828 CTCGCACGTCCTTGCCTTCTTCGCCGCTTCGGACGGCATCGTCAACGAGAACTTGGTGGA 257887
Query 116809 GCGTTTCGCTCAGGAGGTGCAGGTGGCCGAGGCGCGGTGCTTCTACGGCTTTCAGATC 116866
| | ||| | |||||||||| | ||||||||||| || |||||||| || ||||||
Sbjct 257888 GAGGTTCTCGGCGGAGGTGCAGATTGCCGAGGCGCGCTGTTTCTACGGTTTCCAGATC 257945
Score = 109 bits (120), Expect = 6e-19
Identities = 119/158 (75%), Gaps = 0/158 (0%)
Strand=Plus/Plus
Query 116982 AGAAGGCCGAGTGGGCGCTGCGCTGGATCGCCGGCAGAGAGGCCGCCTTCGGCGAGCGCC 117041
|||||||||||||||||||||| |||||| | | | |||| || | || || |
Sbjct 258178 AGAAGGCCGAGTGGGCGCTGCGATGGATCTCGGACCCTCGCGCCGTGTTTGCGGAACGAC 258237
Query 117042 TGGTGGCCTTCGCGGCCGTCGAGGGCGTCTTCTTTTCGGGCAGTTTCGCCGCCATATTTT 117101
|||| || ||||| || ||||||||| ||||||| || ||| |||||| | || || |
Sbjct 258238 TGGTCGCTTTCGCCGCAGTCGAGGGCATCTTCTTCTCCGGCTCGTTCGCCTCGATCTTCT 258297
Query 117102 GGCTCAAGAAACGCGGCCTCATGCCCGGCCTGACTTTC 117139
|||| || || || ||| | ||||||||| |||| |||
Sbjct 258298 GGCTTAAAAAGCGTGGCTTGATGCCCGGCTTGACGTTC 258335
Score = 91.5 bits (100), Expect = 2e-13
Identities = 201/296 (68%), Gaps = 4/296 (1%)
Strand=Plus/Plus
Query 117143 AACGAGCTCATCTCCAGGGACGAGGGTCTGCATTGCGACTTTGCCTGTTTGCTGTTCAAG 117202
|||||||||||||| | ||||| || || || |||||||||||| | || ||| |
Sbjct 258397 AACGAGCTCATCTCGCGCGACGAAGGCCTCCACACCGACTTTGCCTGCCTCCTCTTCTCG 258456
Query 117203 CATTTGGTGCAGCGACCGAGCGCGGCGC-GCGTCAGGGAGATCGTCACCGACGCGGTCGC 117261
|| | | || ||||| ||||| | | ||||| | ||| || |||| || ||||
Sbjct 258457 CACCTCGAGCGCCGACC-AGCGCCTCACCGCGTCGCCCAAATCATCGCCGAAGCCGTCGA 258515
Query 117262 CATCGAGCAGCGCTTCCTCACCGAAGCGCTGCCGGTGCGTCTGCTGGGACTCAATTGCGA 117321
||||||||| ||||| || || || |||| || | || | || | || ||||
Sbjct 258516 GATCGAGCAGGAATTCCTGACGGACGCCTTGCCCGTCGGCTTGATCGGCATGAAC-GCGA 258574
Query 117322 AACG-ATGTCGCAATACATCGAGTTCGTCGCCGACAGGCTGCTGCTCGAGCTGGTCGGCG 117380
| ||| || ||||||||||||||||| ||| | |||| ||| ||| | ||
Sbjct 258575 CCCTCATGCGACAGTACATCGAGTTCGTCGCGGACCGATTGCTTGTCGCGCTTGGGAACG 258634
Query 117381 CCAAGCACTACAACACGCCCAACCCGCTGGACTTTATGAACCTCATCTCCTTGGAG 117436
|||| ||||| | |||||| | ||||||||| | | ||||| |||||
Sbjct 258635 AGAAGCTGTACAATGCCGAGAACCCGTTCGACTTTATGGAGATGATCTCGATGGAG 258690
>seq165
Length=391853
Score = 132 bits (146), Expect = 5e-26
Identities = 134/172 (78%), Gaps = 2/172 (1%)
Strand=Plus/Minus
Query 116969 CCGTGCGTCAAAGAGAAGGCCGAGTGGGCGCTGCGCTGGATCGCCGGCAGAGAGG-CCGC 117027
|| ||| || | ||||||||||||||||||| ||||||| | | | || | |||
Sbjct 48291 CCTTGCATCCAGAAGAAGGCCGAGTGGGCGCTCACCTGGATCTCGGAC-GACCGCTCCGT 48233
Query 117028 CTTCGGCGAGCGCCTGGTGGCCTTCGCGGCCGTCGAGGGCGTCTTCTTTTCGGGCAGTTT 117087
|||||||||||| || || || ||||| |||||||||||| ||||||| || ||| ||
Sbjct 48232 CTTCGGCGAGCGTCTCGTCGCGTTCGCCGCCGTCGAGGGCATCTTCTTCTCCGGCTCGTT 48173
Query 117088 CGCCGCCATATTTTGGCTCAAGAAACGCGGCCTCATGCCCGGCCTGACTTTC 117139
||| |||| || ||||||||||| |||||| | |||||||| || || |||
Sbjct 48172 CGCGTCCATCTTCTGGCTCAAGAAGCGCGGCTTGATGCCCGGACTCACCTTC 48121
Score = 93.3 bits (102), Expect = 4e-14
Identities = 199/295 (67%), Gaps = 2/295 (1%)
Strand=Plus/Minus
Query 117143 AACGAGCTCATCTCCAGGGACGAGGGTCTGCATTGCGACTTTGCCTGTTTGCTGTTCAAG 117202
|||||||||||||| | ||||| ||||| || |||||||||||| | || ||| |
Sbjct 48020 AACGAGCTCATCTCGCGCGACGAAGGTCTCCACACCGACTTTGCCTGCCTCCTCTTCTCG 47961
Query 117203 CATTTGGTGCAGCGACC-GAGCGCGGCGCGCGTCAGGGAGATCGTCACCGACGCGGTCGC 117261
|| | | || || || | | || | || ||| | ||| || ||| |||||||
Sbjct 47960 CACCTCGAGCGCCGCCCTCACCCCGACACG-GTCGAGCGCATCATCCGCGAGGCGGTCGA 47902
Query 117262 CATCGAGCAGCGCTTCCTCACCGAAGCGCTGCCGGTGCGTCTGCTGGGACTCAATTGCGA 117321
|||||||| |||||||| || |||||||| || || | || | || ||||
Sbjct 47901 GATCGAGCAAGAGTTCCTCACGGAGGCGCTGCCCGTCAAGCTCATCGGCATGAACAGCGA 47842
Query 117322 AACGATGTCGCAATACATCGAGTTCGTCGCCGACAGGCTGCTGCTCGAGCTGGTCGGCGC 117381
|||| || ||||||||||| || |||||| | |||| ||| || | | ||
Sbjct 47841 CCTCATGTGCCAGTACATCGAGTTTGTTGCCGACCGCTTGCTTGTCGCACTTGGCAACGA 47782
Query 117382 CAAGCACTACAACACGCCCAACCCGCTGGACTTTATGAACCTCATCTCCTTGGAG 117436
||| |||| ||| | |||||| | ||||| ||| | | ||||| |||||
Sbjct 47781 GAAGATCTACCACAAGGAGAACCCGTTCGACTTCATGGAGATGATCTCGATGGAG 47727
Score = 89.7 bits (98), Expect = 5e-13
Identities = 103/139 (74%), Gaps = 0/139 (0%)
Strand=Plus/Plus
Query 40766 TCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCAGCAACGACTCATCTACG 40825
|||||| || || | ||||| ||||| ||||| | |||||||| || || |||| ||
Sbjct 99786 TCAAGGCCAAGATCCAGGACAAGGAGGGAATCCCTCCCGACCAGCAGCGTCTTATCTTCG 99845
Query 40826 CGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAACATCCAGAAGGAGGCCA 40885
|||| || ||||| || |||| || || || || |||||||||||||| ||| | |
Sbjct 99846 CGGGGAAGCAGCTCGAGGACGGTCGTACTCTTTCGGATTACAACATCCAGAAAGAGTCGA 99905
Query 40886 CGCTGCATCTAGTGTTGCG 40904
| || || || ||| ||||
Sbjct 99906 CCCTCCACCTCGTGCTGCG 99924
Score = 84.2 bits (92), Expect = 2e-11
Identities = 102/139 (73%), Gaps = 0/139 (0%)
Strand=Plus/Plus
Query 40766 TCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCAGCAACGACTCATCTACG 40825
|||||| || || | ||||| ||||| ||||| | |||||||| || || |||| ||
Sbjct 99346 TCAAGGCCAAGATCCAGGACAAGGAGGGAATCCCTCCCGACCAGCAGCGTCTTATCTTCG 99405
Query 40826 CGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAACATCCAGAAGGAGGCCA 40885
|||| || ||||| || || | || || || || |||||||||||||| ||| | |
Sbjct 99406 CGGGGAAGCAGCTCGAGGATGGTCGTACTCTTTCGGATTACAACATCCAGAAAGAGTCGA 99465
Query 40886 CGCTGCATCTAGTGTTGCG 40904
| || || || ||| ||||
Sbjct 99466 CCCTCCACCTCGTGCTGCG 99484
Score = 82.4 bits (90), Expect = 8e-11
Identities = 93/124 (75%), Gaps = 3/124 (2%)
Strand=Plus/Minus
Query 116689 GGACCTGTCCAAGGACACGAGCGACTGGGAGCGCTTG---AACGACAACGAGCGCCATTT 116745
|||||| ||||||||| | | ||||||| | | || ||| ||||| | ||
Sbjct 48774 GGACCTCTCCAAGGACCTCAACCACTGGGACAACAAGCTCAAGGACGACGAGAAGTACTT 48715
Query 116746 CATCAAGCACGTGCTGGCCTTTTTCGCCGCCAGCGACGGCATCGTCAACGAGAATCTGGT 116805
|||| |||||| || ||||| ||||||||| |||||||||||||||||||| ||||
Sbjct 48714 CATCTCGCACGTCCTCGCCTTCTTCGCCGCCTCGGACGGCATCGTCAACGAGAACTTGGT 48655
Query 116806 CGAG 116809
||||
Sbjct 48654 CGAG 48651
>seq215
Length=181685
Score = 122 bits (134), Expect = 9e-23
Identities = 133/174 (76%), Gaps = 2/174 (1%)
Strand=Plus/Plus
Query 40726 ATCACCGTCGACGTCGAAGCCACCGACAGCGTGCA-AACGCTCAAGGAAAAAATTCTCGA 40784
|||||| |||| ||||| | | |||| | | |||| |||||| || || | ||
Sbjct 75470 ATCACCCTCGAGGTCGAGTCGTCGGACACGATCGACAACG-TCAAGGCCAAGATCCAGGA 75528
Query 40785 CAAAGAGGGCATCCCCGCGGACCAGCAACGACTCATCTACGCGGGCAAACAGCTGGACGA 40844
||| |||||||||||| | |||||||| || ||||||| ||| ||||| ||||| || ||
Sbjct 75529 CAAGGAGGGCATCCCCCCTGACCAGCAGCGCCTCATCTTCGCCGGCAAGCAGCTCGAGGA 75588
Query 40845 CGAGCGCACCCTCAACGACTACAACATCCAGAAGGAGGCCACGCTGCATCTAGT 40898
|| ||||||||| ||||||||||||||||||||| | || || || || ||
Sbjct 75589 CGGCCGCACCCTCTCGGACTACAACATCCAGAAGGAGTCGACCCTTCACCTCGT 75642
>seq172
Length=285481
Score = 102 bits (112), Expect = 8e-17
Identities = 92/116 (79%), Gaps = 0/116 (0%)
Strand=Plus/Minus
Query 40783 GACAAAGAGGGCATCCCCGCGGACCAGCAACGACTCATCTACGCGGGCAAACAGCTGGAC 40842
||||| |||||||||||| | |||||||| || || |||| ||| ||||| ||||| ||
Sbjct 52676 GACAAGGAGGGCATCCCCCCCGACCAGCAGCGCCTGATCTTCGCCGGCAAGCAGCTCGAG 52617
Query 40843 GACGAGCGCACCCTCAACGACTACAACATCCAGAAGGAGGCCACGCTGCATCTAGT 40898
|||| ||||| || ||||||||||||||||||||| | || || || || ||
Sbjct 52616 GACGGCCGCACTCTTTCGGACTACAACATCCAGAAGGAGTCGACCCTCCACCTCGT 52561
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 515217796027680
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