Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Rhodotorula_20toruloides_20[genbank_20GCA_5F000988875.1_202015-05-
06] 218 sequences; 20,361,044 total letters
Query= NC_003102.1
Length=139342
Score E
Sequences producing significant alignments: (Bits) Value
seq196 306 3e-78
seq207 104 2e-17
seq165 104 2e-17
>seq196
Length=101194
Score = 306 bits (338), Expect = 3e-78
Identities = 511/739 (69%), Gaps = 0/739 (0%)
Strand=Plus/Minus
Query 23143 ATCCTTGTAGAGCATGTACGGCGTGCCCGTCTCGACCTGCGACTCGATGATCGCTCGCCA 23202
|||||||||||||||| | || |||||||||||||||| | ||||| || || |||
Sbjct 13800 ATCCTTGTAGAGCATGAAGGGGTTGCCCGTCTCGACCTGGGCCTCGAGGACGGCGTACCA 13741
Query 23203 CATAGTCTGAGCGTGAACACGTCGCACGTACCTGCCTTCTTCCTCGTACTTTTGGTACAA 23262
| |||| ||| | | ||| | | || || | ||||||||||| | |
Sbjct 13740 GAGCTTCTGGGCGGGGATGGTGCGCTTGGCGCGACCCTCCTTCTCGTACTTTTCAAAGAG 13681
Query 23263 CGCGTCAAATTCGGCACCGTAACAGTCGGCCAGGCCGGGCGATTGCATCGGACACATGAG 23322
| | | || ||| | ||||| ||| || ||||||| | ||| || | |||
Sbjct 13680 CTCCTTGAACTCGTCGCCGTAGACCTCGTGGAGACCGGGCGCCTCGGCCGGGCAGAAGAG 13621
Query 23323 ACTCCACATTGAGTCATTTTCAACGCGTCTCATAAAAAGATCCGGTATCCATAGAGCGTA 23382
||| || | || || || ||| || || || || ||||| || || |
Sbjct 13620 GGGCCAGTCGCCGTTCTGCTCGACACGCTCCATGAAGAGGTCGGGGATCCAAAGGGCAAA 13561
Query 23383 GAACAGTTCGCGGGCGCGCACCTCCTCTTTGCCGGTGTTCTTTTTCAAATCCAAAAAGTC 23442
||||| ||||| ||||| |||||||| |||||| |||||| | || | || ||
Sbjct 13560 GAACAAGTCGCGCGCGCGGACCTCCTCCTTGCCGTGGTTCTTGCGGAGGTCGAGGAACTC 13501
Query 23443 CAACACGTCCGCATGCCACGGCTCGAGGTAAACGGCAAACGCGCCCGGTCTCTTATTGCC 23502
|| | ||| || ||||||||||||||||| | ||| ||||||||||| | ||| |||||
Sbjct 13500 GAAGATGTCGGCGTGCCACGGCTCGAGGTAGATGGCGAACGCGCCCGGGCGCTTGTTGCC 13441
Query 23503 GCCCTGATCGACGTAACGGGCCGTGTTGTTGTACACTCTTAGCATCGGCACGAGACCGTT 23562
||||| |||||||| || ||||||||||||||||| | ||||| || | || |||||
Sbjct 13440 TCCCTGGTCGACGTAGCGCGCCGTGTTGTTGTACACGCGGAGCATGGGGATGATGCCGTT 13381
Query 23563 GGACGCGCCGCCTACGCCCGCCACACTCGAACCTTTTGCTCGAACGTTGTGAACGTGGAA 23622
|| |||| ||| || | |||||| | || || | |||||| | ||
Sbjct 13380 CGAGTAGCCGTTCGTGCCGGCGATGTACGAACCGGTCGCGCGGATGTTGTGGATCGAGAG 13321
Query 23623 ACCTATGCCTCCGCCCGATTTCGATATCATCGCGCATTGTTTCAGAGTGTCGTAGATGCC 23682
|| ||||| || ||| || || || | |||||| || || ||||||||||||||
Sbjct 13320 GCCGATGCCGCCTGCCGTCTTGGAGATGAGCGCGCACGTCTTGAGCGTGTCGTAGATGCC 13261
Query 23683 CTCGATGCTGTCCTCTTTGGTCGCGACCAAGAAACACGAAGACATTTGCGCTTTGGGCGT 23742
|||||| ||| || || ||| ||| | ||| ||||| || | |||| | |||||
Sbjct 13260 CTCGATCGAGTCGTCCTTCATCGTGACGAGGAAGCACGACGAGAGCTGCGGGTGCGGCGT 13201
Query 23743 AGCGGCCGAGAACAGTGTCGGGCTGGCGTGCGTAAAGTATCCATTCGACATTAGATTGTA 23802
|||| ||| || ||||| |||||||||||||| | | |||||| || |||||
Sbjct 13200 GCCGGCGTTGAAGAGCGTCGGCGACGCGTGCGTAAAGTACCGCTCCGACATGAGGTTGTA 13141
Query 23803 CGTGTCGATGGCGGCATCAATGTCCTCTCCGTGTATACCGATGGCGACGCGCATCATCAT 23862
||| ||||| ||| |||||||| || ||||| || |||| ||||||||||| | |||
Sbjct 13140 CGTCTCGATCGCGCGGTCAATGTCGTCGCCGTGGATGCCGACCGCGACGCGCATGAGCAT 13081
Query 23863 GTATTGAGGTCTCTCGACC 23881
|| || |||| |||| ||
Sbjct 13080 GTGCTGCGGTCGCTCGGCC 13062
Score = 194 bits (214), Expect = 1e-44
Identities = 407/600 (68%), Gaps = 15/600 (3%)
Strand=Plus/Minus
Query 22099 GGCGGTCTTGTCCACTGTAAACTGTATGGCGTTTGCGGCCGGTTTGGTGCGAAGATAATA 22158
|| || || ||| || || |||| |||||| |||| | |||||| || || ||
Sbjct 14989 GGTGGCCTGGTCGACGGTGAACTTGATGGCGCCGACGGCAGCGCGGGTGCGGAGGTAGTA 14930
Query 22159 CATGCCCGTCTTCAGACCCATCTTCCACGCGTAAAAATGTATCGACGTCAATTTT-CCAT 22217
|||||||||||| ||||| ||||||| |||| || || |||||||| | | ||||
Sbjct 14929 CATGCCCGTCTTGAGACCTTTCTTCCATCCGTAGAAGTGCATCGACGTGAGCTGCGCCAT 14870
Query 22218 AACTCGGCAAGTCCATGTACACATTGAACGACTGACTCTGATCGATAAACGCTCCTCGAT 22277
||||| | | || || |||| |||||| ||| ||||| ||||| || || |
Sbjct 14869 GG-TCGGCGACGAGAGGTGGACGTTGAGCGACTGCGACTGGTCGATGAACGCGCCGCGGT 14811
Query 22278 CGGCGGCCATATTTATCAATGTACG--CAT---CGACATTTCCCATACGGTCTTGTACAG 22332
||||||| | | | ||| ||| | | ||| || ||||| ||||||||||| |
Sbjct 14810 CGGCGGCGAGGT----CGATG-ACGACCTTTTGCGAGATCTCCCACACGGTCTTGTAGAT 14756
Query 22333 TTGCCTGATCTCTAACGGTATCGATTCGATCCTCTGGACGGACCCGTTATTGTGTATGAT 22392
|| ||| ||| || || || |||||| || ||||| | |||||
Sbjct 14755 GCGCTTGAGCTCGTCGGGGATGCCGGGGACGTTCTGGATCGAGCCGTTGTGCGCGATGAT 14696
Query 22393 CAAATTTTTAATCGTATCGTTCCACAAACCGATGGCGGTCAAATCTTTGACCAGATGACG 22452
| || || |||| |||||||||| ||| | || | || || || |
Sbjct 14695 CGTGTTCTTCATCGCGTCGTTCCACAGGCCGCGGTCGACGAGGTCGCGGAGGAGCCAGGG 14636
Query 22453 GTTCACCACTTGAAACTCGCCGGACAAGACGCGGCGTTGGTAAATGTTGGATGTGAACGG 22512
||| || || || |||||||||| | ||||||||| ||| |||||||| ||| ||||
Sbjct 14635 GTTGACGACCTGGAACTCGCCGGCGAGGACGCGGCGGGTGTAGATGTTGGACGTGTACGG 14576
Query 22513 TTCGAAAGATTCATTGTTTCCCAGTATCTGAGCGGTCGAAGCGGTCGGCATCGGCGCCAA 22572
||||| | || ||| || || ||||| |||||| ||||| ||||||||||| |
Sbjct 14575 CTCGAACGCCTCGTTGAAGCCGAGGATCTGGCTGGTCGAGGCGGTAGGCATCGGCGCGCA 14516
Query 22573 CAGTAGCGAGTTTCTCAAGCCGTGCTTTGAAATTTTACTCTTGAGCATCGACCAGTCCCA 22632
|| |||||||| | | |||||||| | ||| || ||| | | | |||||||||
Sbjct 14515 CACGAGCGAGTTGCGGATGCCGTGCTGCGCAATCTTCTCCTTCAACTCGGCCCAGTCCCA 14456
Query 22633 CAGATCGGACGGCGTCACATTGTCCCACATATCGTATTGCAACACGCCGCGACTCGCCGG 22692
||| || | |||||| || || ||||| |||||| ||||| | |||| | ||||| ||
Sbjct 14455 CAGGTCCGTCGGCGTGAC---GTTCCACAGATCGTACTGCAAGAGGCCGTGGCTCGCGGG 14399
>seq207
Length=219063
Score = 104 bits (114), Expect = 2e-17
Identities = 149/210 (71%), Gaps = 0/210 (0%)
Strand=Plus/Plus
Query 31192 CATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTC 31251
|||||| || ||||| ||||| || || ||||| || |||||| |||| || || | ||
Sbjct 76386 CATGCAGATCTTCGTCAAGACCCTCACCGGCAAGACCATCACCCTCGAGGTCGAGTCTTC 76445
Query 31252 CGACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCA 31311
|||| |||| | ||||| | || ||||||||| || | || ||||||||
Sbjct 76446 GGACACCATCGACAACGTCAAGGCCAAGATTCAGGACAAGGAGGGAATCCCTCCCGACCA 76505
Query 31312 GCAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTATAA 31371
|||||| | || ||||| ||||| ||| | || ||| | || | ||||| || ||
Sbjct 76506 GCAGCGCTTGATCTTCGCGGGCAAGCAGCTTGAGGACGGTCGCACGCTCAGCGACTACAA 76565
Query 31372 CATTCAAAAAGAATCGACTCTTCATCTGGT 31401
||| || || || || || || ||||||||
Sbjct 76566 CATCCAGAAGGAGTCTACACTCCATCTGGT 76595
>seq165
Length=391853
Score = 104 bits (114), Expect = 2e-17
Identities = 219/321 (68%), Gaps = 32/321 (10%)
Strand=Plus/Minus
Query 58077 AACGAGTTGATATCGCGCGACGAGGGTCTCCATACTGATTTTGCGTGCCTAATGTACTCT 58136
|||||| | || ||||||||||| |||||||| || || ||||| ||||| | | |||
Sbjct 48020 AACGAGCTCATCTCGCGCGACGAAGGTCTCCACACCGACTTTGCCTGCCTCCTCTTCTCG 47961
Query 58137 CACATTGT-------CAATAAACCGACGCGG--GATCGCATCTTGGACATTATCACCGAG 58187
||| | | | | ||||| ||| || |||||| ||| ||||
Sbjct 47960 CACCTCGAGCGCCGCCCTCACCCCGACACGGTCGAGCGCATC---------ATCCGCGAG 47910
Query 58188 GCGGTCGCGATCGAAAATGAGTTTGTCACCGAAGCCCTACCGGTGGCCATGCTC---GGT 58244
||||||| |||||| | ||||| |||| || || || || || || |||| ||
Sbjct 47909 GCGGTCGAGATCGAGCAAGAGTTCCTCACGGAGGCGCTGCCCGT---CAAGCTCATCGGC 47853
Query 58245 ATGAACAATGATTTGATGTCAAAGTACATTGAGTTTGTTGCCGACAGACTT--TTGCTCG 58302
||||||| || | |||| ||||||| ||||||||||||||| | ||| ||| |||
Sbjct 47852 ATGAACAGCGACCTCATGTGCCAGTACATCGAGTTTGTTGCCGACCG-CTTGCTTG-TCG 47795
Query 58303 AACT--GATTGGAGAGCGTCATTACAACACGAAAAATCCGTTTGATTTTATGAATCTGAT 58360
||| | |||| || ||| ||| | | || ||||| || || ||| | ||||
Sbjct 47794 CACTTGGCAACGAGAAGATC--TACCACAAGGAGAACCCGTTCGACTTCATGGAGATGAT 47737
Query 58361 CTCGCTCGAGGGCAAGACAAA 58381
|||| | ||||||||||| ||
Sbjct 47736 CTCGATGGAGGGCAAGACCAA 47716
Score = 86.0 bits (94), Expect = 6e-12
Identities = 85/110 (77%), Gaps = 0/110 (0%)
Strand=Plus/Minus
Query 57963 TTCGCCGAGAGGCTAATCGCGTTCGCCGCCGTCGAAGGTATATTCTTTTCGGGCAGCTTT 58022
|||| |||| | || ||||||||||||||||||| || || ||||| || ||| ||
Sbjct 48231 TTCGGCGAGCGTCTCGTCGCGTTCGCCGCCGTCGAGGGCATCTTCTTCTCCGGCTCGTTC 48172
Query 58023 GCGGCAATATTTTGGATGAAGAAACGCGGCCTGATGCCCGGCCTGACGTT 58072
||| | || || ||| | ||||| |||||| |||||||||| || || ||
Sbjct 48171 GCGTCCATCTTCTGGCTCAAGAAGCGCGGCTTGATGCCCGGACTCACCTT 48122
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 445765185286560
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |