Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhodotorula_20toruloides_20[genbank_20GCA_5F000988875.1_202015-05- 06] 218 sequences; 20,361,044 total letters Query= NC_003391.1 Length=205719 Score E Sequences producing significant alignments: (Bits) Value seq196 107 3e-18 >seq196 Length=101194 Score = 107 bits (118), Expect = 3e-18 Identities = 363/556 (65%), Gaps = 16/556 (3%) Strand=Plus/Minus Query 66041 CCACTCTCCGTCATCCTTCACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGCTATAAA 66100 ||| || |||| | || || || | ||| ||||| || || |||||||| || | || Sbjct 13617 CCAGTCGCCGTTCTGCTCGACACGCTCCATGAAGAGGTCGGGGATCCAAAGGGCAAAGAA 13558 Query 66101 TAAATCTCTGGTTCTATGTTCCTCGTTTCCTGTATTCTTTTTAAGATCGAGGAACGCCAT 66160 || || | | | ||||| || || ||||| || ||||||||| | | Sbjct 13557 CAAGTCGCGCGCGCGGACCTCCTCCTTGCCGTGGTTCTTGCGGAGGTCGAGGAACTCGAA 13498 Query 66161 AATATCATAATGCCACGGTTCCAAGTATATGGCCATAACTCCAGGCCGTTTGTTTCCTCC 66220 || || |||||||| || | ||| ||||| | | || || || ||||| ||||| Sbjct 13497 GATGTCGGCGTGCCACGGCTCGAGGTAGATGGCGAACGCGCCCGGGCGCTTGTTGCCTCC 13438 Query 66221 CTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATAATACCATTGGA 66280 ||| || | ||| | || ||||| || || || | | ||| || || || || || || Sbjct 13437 CTGGTCGACGTAGCGCGCCGTGTTGTTGTACACGCGGAGCATGGGGATGATGCCGTTCGA 13378 Query 66281 TGTA-CCATTGGTCCCGGAGATATAGCTTCCACTTGCACGAATATTACTAATTGATAGAC 66339 ||| || || || |||| ||| || || | || || || || || || || | Sbjct 13377 -GTAGCCGTTCGTGCCGGCGATGTACGAACCGGTCGCGCGGATGTTGTGGATCGAGAGGC 13319 Query 66340 CTATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAA-CGTATCATAGATGCCC 66398 | || || |||||| | || ||||| | ||||| ||| || | ||| || ||||||||| Sbjct 13318 CGATGCCGCCTGCCGTCTTGGAGATGAGCGCGCA-CGTCTTGAGCGTGTCGTAGATGCCC 13260 Query 66399 TCTATACTATCATCCATCAT-GTTAAGTAGAA-AACAGCTAGACATTTGGTGACGACTAG 66456 || || || ||| |||| || | | ||| || | ||| | || || | | Sbjct 13259 TCGATCGAGTCGTCCTTCATCGTGACGAGGAAGCACGACGAGAGCTGCGGGTGCGGC--G 13202 Query 66457 TTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTTTTCAGAAAGTAGATTGT 66516 | || || || || | || || || ||||||||||| | || || | || |||| Sbjct 13201 TGCCGGCGTTGAAGAGCGTCGGCGACGCGTGCGTAAAGTACCGCTCCGACATGAGGTTGT 13142 Query 66517 ACGTCTCAATAGCTGAGTCTATATC----CCATTGATGAATTCCTACTGCGACACGCATT 66572 ||||||| || || ||| || || || | |||| || || ||||| ||||| Sbjct 13141 ACGTCTCGATCGCGCGGTCAATGTCGTCGCCGTGGATG----CCGACCGCGACGCGCATG 13086 Query 66573 AACATGTGCTGAGGTC 66588 | ||||||||| |||| Sbjct 13085 AGCATGTGCTGCGGTC 13070 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 658171006479120