Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhodotorula_20toruloides_20[genbank_20GCA_5F000988875.1_202015-05- 06] 218 sequences; 20,361,044 total letters Query= NC_003663.2 Length=224499 Score E Sequences producing significant alignments: (Bits) Value seq196 113 6e-20 seq165 93.3 6e-14 seq175 87.8 3e-12 >seq196 Length=101194 Score = 113 bits (124), Expect = 6e-20 Identities = 353/537 (66%), Gaps = 16/537 (3%) Strand=Plus/Minus Query 79939 ACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGCTATAAATAGATCTCTGGTTCTATGC 79998 || || | ||| ||||| || || |||||||| || | || | || | | | | Sbjct 13598 ACACGCTCCATGAAGAGGTCGGGGATCCAAAGGGCAAAGAACAAGTCGCGCGCGCGGACC 13539 Query 79999 TCCTCGTTTCCTGTATTCTTTTTAAGATCGAGGAACGCCATAATATCAGAATGCCACGGT 80058 ||||| || || ||||| || ||||||||| | | || || | |||||||| Sbjct 13538 TCCTCCTTGCCGTGGTTCTTGCGGAGGTCGAGGAACTCGAAGATGTCGGCGTGCCACGGC 13479 Query 80059 TCCAAGTATATGGCCATAACTCCCGGTCGTTTGTTTCCTCCCTGATCTATGTATCTAGCG 80118 || | ||| ||||| | | ||||| || ||||| |||||||| || | ||| | || Sbjct 13478 TCGAGGTAGATGGCGAACGCGCCCGGGCGCTTGTTGCCTCCCTGGTCGACGTAGCGCGCC 13419 Query 80119 GTGTTATTATAAACTCTCAACATTGGAATAATACCATTGGATGTA-CCATTGGTCCCGGA 80177 ||||| || || || | | ||| || || || || || || ||| || || || |||| Sbjct 13418 GTGTTGTTGTACACGCGGAGCATGGGGATGATGCCGTTCGA-GTAGCCGTTCGTGCCGGC 13360 Query 80178 GATATAGCTTCCACTGGCACGAATATTACTAATTGATAGACCTATTCCCCCTGCCATTTT 80237 ||| || || | || || || || || || || || || || |||||| | || Sbjct 13359 GATGTACGAACCGGTCGCGCGGATGTTGTGGATCGAGAGGCCGATGCCGCCTGCCGTCTT 13300 Query 80238 AGAGATTAATGCGCATCGTTTTAA-CGTATCATAGATGCCCTCTATGCTATCATCAATCA 80296 ||||| | ||||| ||| || | ||| || ||||||||||| || || || ||| Sbjct 13299 GGAGATGAGCGCGCA-CGTCTTGAGCGTGTCGTAGATGCCCTCGATCGAGTCGTCCTTCA 13241 Query 80297 T-GTTAAGTAGAA-AACAGCTAGACATTTGGTGACGACTAGTTCCCGCATTAAATAAGGT 80354 | || | | ||| || | ||| | || || | || || || || || | || Sbjct 13240 TCGTGACGAGGAAGCACGACGAGAGCTGCGGGTGCGGC--GTGCCGGCGTTGAAGAGCGT 13183 Query 80355 AGGAGAAGCGTGCGTAAACCATTTTTCAGACAGTAGATTGTACGTCTCAATAGCTGATTC 80414 || || ||||||||||| | || |||| || ||||||||||| || || || Sbjct 13182 CGGCGACGCGTGCGTAAAGTACCGCTCCGACATGAGGTTGTACGTCTCGATCGCGCGGTC 13123 Query 80415 TATATC----CCATTGATGAATTCCTACCGCGACACGCATTAACATGTGCTGAGGTC 80467 || || || | |||| || |||||||| ||||| | ||||||||| |||| Sbjct 13122 AATGTCGTCGCCGTGGATG----CCGACCGCGACGCGCATGAGCATGTGCTGCGGTC 13070 >seq165 Length=391853 Score = 93.3 bits (102), Expect = 6e-14 Identities = 120/162 (74%), Gaps = 3/162 (2%) Strand=Plus/Plus Query 50007 GGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGACGCAAATGA 50066 ||| || |||||||||||||| | ||| ||||| || ||||| || |||||||| || || Sbjct 48118 GGAGAAGGTGAGTCCGGGCATCAAGCCGCGCTTCTTGAGCCAGAAGATGGACGCGAACGA 48177 Query 50067 CCCAGAAAAGAAGATTCCTTCTACTGCGGCAAAGGCAACAAGTCTCTCTCC-ATAACTG- 50124 || || |||||||| || || || ||||| || || || || | ||| || | || | Sbjct 48178 GCCGGAGAAGAAGATGCCCTCGACGGCGGCGAACGCGACGAGACGCTCGCCGAAGACGGA 48237 Query 50125 GCGCT-GTCATGTATCCACTTTTGAGCCCAATCGGCCTTCTT 50165 ||| | ||| ||||| | | ||||| ||||||||||| Sbjct 48238 GCGGTCGTCCGAGATCCAGGTGAGCGCCCACTCGGCCTTCTT 48279 >seq175 Length=283523 Score = 87.8 bits (96), Expect = 3e-12 Identities = 81/103 (79%), Gaps = 0/103 (0%) Strand=Plus/Minus Query 50008 GAAAACGTGAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGACGCAAATGAC 50067 || ||||| | |||||||| | |||||||||||||||||| || || || || || || Sbjct 258337 GAGAACGTCAAGCCGGGCATCAAGCCACGCTTTTTAAGCCAGAAGATCGAGGCGAACGAG 258278 Query 50068 CCAGAAAAGAAGATTCCTTCTACTGCGGCAAAGGCAACAAGTC 50110 || || |||||||| || || |||||||| || || || |||| Sbjct 258277 CCGGAGAAGAAGATGCCCTCGACTGCGGCGAAAGCGACCAGTC 258235 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 718266842717520