Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhodotorula_20toruloides_20[genbank_20GCA_5F000988875.1_202015-05- 06] 218 sequences; 20,361,044 total letters Query= NC_006998.1 Length=194711 Score E Sequences producing significant alignments: (Bits) Value seq165 87.8 2e-12 seq175 86.0 8e-12 >seq165 Length=391853 Score = 87.8 bits (96), Expect = 2e-12 Identities = 117/162 (72%), Gaps = 3/162 (2%) Strand=Plus/Plus Query 33351 GGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGAAGCGAATGA 33410 ||| || |||||||||||||| | ||| ||||| || ||||| || ||||| ||||| || Sbjct 48118 GGAGAAGGTGAGTCCGGGCATCAAGCCGCGCTTCTTGAGCCAGAAGATGGACGCGAACGA 48177 Query 33411 TCCAGAAAAGAAGATTCCTTCTACTGCAGCAAAGGCAATAAGTCTCTCTCCATAACCGGC 33470 || || |||||||| || || || || || || || | || | ||| || | ||| Sbjct 48178 GCCGGAGAAGAAGATGCCCTCGACGGCGGCGAACGCGACGAGACGCTCGCCGAAGACGGA 48237 Query 33471 GCTGTCAT---GTATCCACTTTTGAGCCCAATCGGCCTTCTT 33509 || ||| | ||||| | | ||||| ||||||||||| Sbjct 48238 GCGGTCGTCCGAGATCCAGGTGAGCGCCCACTCGGCCTTCTT 48279 >seq175 Length=283523 Score = 86.0 bits (94), Expect = 8e-12 Identities = 116/161 (72%), Gaps = 3/161 (2%) Strand=Plus/Minus Query 33352 GAAAACGTGAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGAAGCGAATGAT 33411 || ||||| | |||||||| | |||||||||||||||||| || || || ||||| || Sbjct 258337 GAGAACGTCAAGCCGGGCATCAAGCCACGCTTTTTAAGCCAGAAGATCGAGGCGAACGAG 258278 Query 33412 CCAGAAAAGAAGATTCCTTCTACTGCAGCAAAGGCAATAAGTCTCTCTCCATAACCGGCG 33471 || || |||||||| || || ||||| || || || | |||| || || | ||||| Sbjct 258277 CCGGAGAAGAAGATGCCCTCGACTGCGGCGAAAGCGACCAGTCGTTCCGCAAACACGGCG 258218 Query 33472 C---TGTCATGTATCCACTTTTGAGCCCAATCGGCCTTCTT 33509 | ||| ||||| | ||||| ||||||||||| Sbjct 258217 CGAGGGTCCGAGATCCATCGCAGCGCCCACTCGGCCTTCTT 258177 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 622945502468880