Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Rhodotorula_20toruloides_20[genbank_20GCA_5F000988875.1_202015-05-
06] 218 sequences; 20,361,044 total letters
Query= NC_007346.1
Length=407339
Score E
Sequences producing significant alignments: (Bits) Value
seq196 221 3e-52
>seq196
Length=101194
Score = 221 bits (244), Expect = 3e-52
Identities = 502/745 (67%), Gaps = 20/745 (3%)
Strand=Plus/Plus
Query 363448 GAACGCCCGCAGCATATGTTAATGCGTGTTGCTATTGGTATCCATTGCCCGGATGTTGAT 363507
|| || |||||||| ||| | ||||| || || | || ||||| || || ||||
Sbjct 13066 GAGCGACCGCAGCACATGCTCATGCGCGTCGCGGTCGGCATCCACGGCGACGACATTGAC 13125
Query 363508 GCCGCGATTGAAACATATAAGCTTCTAAGTGCTCGTGTA-TTCACGCACGCCACGCCAAC 363566
|||||| || || || || || | | || ||| || |||||||| |||| ||
Sbjct 13126 CGCGCGATCGAGACGTACAACCTCATGTCGGAGCG-GTACTTTACGCACGCGTCGCCGAC 13184
Query 363567 AATGTACAATGCTGGAACTCGTAATCCACAGATGTCTTCTTGCTTTCTTCTAAAAATGAA 363626
| | ||| || || || | | || ||| | || || ||||| || | | |||||
Sbjct 13185 GCTCTTCAACGCCGGCACGCCGCACCCGCAGCTCTCGTCGTGCTTCCTCGTCACGATGAA 13244
Query 363627 GGACGATTCCATCGAGGGTATCTTTGACACACTTAAGAATTGTGCTCTTATTTCCAAGAA 363686
|||||| || |||||||| |||| ||||| || |||| || || || || |||||||
Sbjct 13245 GGACGACTCGATCGAGGGCATCTACGACACGCTCAAGACGTGCGCGCTCATCTCCAAGAC 13304
Query 363687 TGCAGGCGGAATTGGTGTATCGATCCACAATGTTCGTGCACAGAACAGTT---ACATTCG 363743
|||||||| || || | ||||||||||| | || || || | ||| ||||
Sbjct 13305 GGCAGGCGGCATCGGCCTCTCGATCCACAACATCCGCGC---GACCGGTTCGTACATCGC 13361
Query 363744 CGGCACAGGGGGATACTCGAATGGGCTGGTTCCCATGCTTCGTGTGTTTGACAATACTGC 363803
|||||| || |||||||| || | | |||||||| || |||| |||| || ||
Sbjct 13362 CGGCACGAACGGCTACTCGAACGGCATCATCCCCATGCTCCGCGTGTACAACAACACGGC 13421
Query 363804 GAGGTACGTCGACCAGGGTGGAGGAAAGCGCAAAGGGGCGTTTGCTATGTATCTCGAGCC 363863
| | |||||||||||||| || |||||| || ||||| || || || ||||||||
Sbjct 13422 GCGCTACGTCGACCAGGGAGGCAACAAGCGCCCGGGCGCGTTCGCCATCTACCTCGAGCC 13481
Query 363864 TCATCATGCCGATATTTTTGAGTTTCTTGAGCTCCGGAAAAACACGGGAAAAGAGGAATT 363923
|| ||||| || || ||||| || || ||||| || ||| || || ||||| |
Sbjct 13482 GTGGCACGCCGACATCTTCGAGTTCCTCGACCTCCGCAAGAACCACGGCAAGGAGGAGGT 13541
Query 363924 GCGTGCACGTGATCTGTTCTATGCACTTTGGGTTTCTGACCATTTTATGAAGCGCGTGGA 363983
|| || || || |||||| ||| |||||| | | |||| || ||| |||| || ||
Sbjct 13542 CCGCGCGCGCGACTTGTTCTTTGCCCTTTGGATCCCCGACCTCTTCATGGAGCGTGTCGA 13601
Query 363984 GGCAGGTAAG-AATTGGTCACTCTTTTGCCCACACGAATGTCCAGGTCTTTCCGATGTAT 364042
|||| | | ||| | ||||| ||||| ||| || ||||| ||| || |
Sbjct 13602 -GCAGAACGGCGACTGGCCCCTCTTCTGCCCGGCCGAGGCGCCCGGTCTCCACGAGGTCT 13660
Query 364043 GGGGTGACGACT--ATGTTGCTCTATACGAAAAGTATGAATCGGAGGGAAAGGCTCGTAA 364100
|| ||||| | | | ||||| | |||||||| || |||||| || ||
Sbjct 13661 ACGGCGACGAGTTCAAGGAGCTCTTT--GAAAAGTACGAGAAGGAGGGTCGCGC---CAA 13715
Query 364101 G---ACAATTCCCGCACAGAAGCTATGGTTTGCCATCATGGATTCGCAGATTGAGACAGG 364157
| || || ||||| |||||||| |||| ||| || | || | ||| | ||||| ||
Sbjct 13716 GCGCACCATCCCCGCCCAGAAGCTCTGGTACGCCGTCCTCGAGGCCCAGGTCGAGACGGG 13775
Query 364158 AACACCCTATATGTTGTACAAAGAT 364182
| |||| ||| | ||||| |||
Sbjct 13776 CAACCCCTTCATGCTCTACAAGGAT 13800
Score = 118 bits (130), Expect = 3e-21
Identities = 335/512 (65%), Gaps = 6/512 (1%)
Strand=Plus/Plus
Query 364648 TTCCAGTTTGATCTATGGAATGTCACGCCATCTGTCCGATGGAACTGGGATACGCTACGT 364707
|| |||| ||||| ||||| |||||||| | | || ||| |||||| | |
Sbjct 14417 TTGCAGTACGATCTGTGGAACGTCACGCCGACGGACCTGTGGGACTGGGCCGAGTTGAAG 14476
Query 364708 TCCAACGTTAAGAAGCATGGTACTCGCAACTCCCTCGTTACAGCGCCCATGCCCACGGCT 364767
|| || | |||| || | |||||||| ||||| ||||| ||||| || ||
Sbjct 14477 GAGAAGATTGCGCAGCACGGCATCCGCAACTCGCTCGTGTGCGCGCCGATGCCTACCGCC 14536
Query 364768 TCTACTGCACAGATCCTCGGAAACAACGAGTGCTTCGAACCGTTTACAAGCAATCTTTAT 364827
|| || ||||||||||| ||||||| ||||| |||| || ||| | ||
Sbjct 14537 TCGACCAGCCAGATCCTCGGCTTCAACGAGGCGTTCGAGCCGTACACGTCCAACATCTAC 14596
Query 364828 TCACGCCGGGTTCTTTCCGGAGAATTTCCGGTAGTTAATAAGTACCTAGTCAAGGATCTT 364887
| ||||| || || |||| || || | ||| || || | || || || ||
Sbjct 14597 ACCCGCCGCGTCCTCGCCGGCGAGTTCCAGGTCGTCAACCCCTGGCTCCTCCGCGACCTC 14656
Query 364888 TCCGACCGCGGGCTGTGGGGTGACAGCATGAAGAACTATATCATCGCCGCTAATGGTTCT 364947
||||||||| |||||| ||| ||||||||| |||||||| || || ||
Sbjct 14657 GTCGACCGCGGCCTGTGGAACGACGCGATGAAGAACACGATCATCGCGCACAACGGCTCG 14716
Query 364948 GTGCAGAACATTCCAGGATTTCCAGAAGATCTGAAGCCTATTTACAAAACCGTATGGGAA 365007
| |||||| | || || | || || || || |||| || ||||| ||||| |||||
Sbjct 14717 ATCCAGAACGTCCCCGGCATCCCCGACGAGCTCAAGCGCATCTACAAGACCGTGTGGGAG 14776
Query 365008 ATTTCCATGCGAA--CTC-TCATTGATATGGCGGCCGATCGCGGTGCTTTTATCTGTCAG 365064
|| || || || || |||| || | || ||||| ||||| || || ||| |||
Sbjct 14777 ATCTC---GCAAAAGGTCGTCATCGACCTCGCCGCCGACCGCGGCGCGTTCATCGACCAG 14833
Query 365065 AGCCAGTCGTTTAACGTATTCATGACTCAGCCAACCTCCGCCAAGCTTACATCCATGCAT 365124
|||||| | ||||| | | | ||| ||| || |||| || || |||||
Sbjct 14834 TCGCAGTCGCTCAACGTCCACCTCTCGTCGCCGACCATGGCGCAGCTCACGTCGATGCAC 14893
Query 365125 TTCTACGGGTGGAAATCCGGTCTTAAGACAGG 365156
|||||||| ||||| ||||| ||||| ||
Sbjct 14894 TTCTACGGATGGAAGAAAGGTCTCAAGACGGG 14925
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1303349959570476
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