Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Rhodotorula_20toruloides_20[genbank_20GCA_5F000988875.1_202015-05-
06] 218 sequences; 20,361,044 total letters
Query= NC_007921.1
Length=147544
Score E
Sequences producing significant alignments: (Bits) Value
seq207 156 4e-33
seq196 123 2e-23
seq165 111 1e-19
seq172 95.1 1e-14
seq215 93.3 4e-14
>seq207
Length=219063
Score = 156 bits (172), Expect = 4e-33
Identities = 172/229 (75%), Gaps = 0/229 (0%)
Strand=Plus/Minus
Query 131007 GCCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCT 131066
|||||||||||| | || ||| | ||| | || |||||||| || |||||||| |||||
Sbjct 76614 GCCACCGCGCAACCTCAACACCAGATGGAGTGTAGACTCCTTCTGGATGTTGTAGTCGCT 76555
Query 131067 CATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGG 131126
| ||||| |||||| ||||||||||| ||| |||| || ||||||||||| |||||
Sbjct 76554 GAGCGTGCGACCGTCCTCAAGCTGCTTGCCCGCGAAGATCAAGCGCTGCTGGTCGGGAGG 76495
Query 131127 GATTCCTTCTTTGTCGGTGATTTTCTGCTTGAGCTGCTCCACAGTATCGGTGGACTCGAT 131186
|||||| || ||||| || || ||||| | || | || || | |||||||
Sbjct 76494 GATTCCCTCCTTGTCCTGAATCTTGGCCTTGACGTTGTCGATGGTGTCCGAAGACTCGAC 76435
Query 131187 GTCGACGGTAACGGTTTTACCGGTTAGAGTTTTTACGAAAATCTGCATG 131235
|||| ||| | ||| || ||||| || || || ||||| |||||||||
Sbjct 76434 CTCGAGGGTGATGGTCTTGCCGGTGAGGGTCTTGACGAAGATCTGCATG 76386
Score = 100 bits (110), Expect = 3e-16
Identities = 115/155 (74%), Gaps = 0/155 (0%)
Strand=Plus/Minus
Query 131008 CCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCTC 131067
|||||||| | ||| ||||| | || | || ||||| || || |||||||||||
Sbjct 77340 CCACCGCGAAGACGAAGCACCAGGTGCAGCGTAGACTCTTTCTGGATGTTGTAATCTGAA 77281
Query 131068 ATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGGG 131127
| ||||| |||||| |||||||| || ||| |||| || ||||||||||| ||||||
Sbjct 77280 AGCGTGCGTCCGTCCTCAAGCTGCTTCCCCGCGAAGATCAAGCGCTGCTGGTCGGGAGGG 77221
Query 131128 ATTCCTTCTTTGTCGGTGATTTTCTGCTTGAGCTG 131162
|| || || ||||| ||| || ||||| |||
Sbjct 77220 ATACCCTCCTTGTCCTGGATCTTAGCCTTGACCTG 77186
Score = 91.5 bits (100), Expect = 1e-13
Identities = 101/135 (75%), Gaps = 0/135 (0%)
Strand=Plus/Minus
Query 131007 GCCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCT 131066
||| ||||| | ||||||||| | || | ||||||||| || || || || |||||
Sbjct 76909 GCCTCCGCGGAGACGCAGCACGAGGTGGAGGGTCGACTCTTTCTGGATATTATAATCCGA 76850
Query 131067 CATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGG 131126
| || || |||||| |||||||| || ||| |||| || ||||| ||||| |||||
Sbjct 76849 AAGAGTACGACCGTCCTCGAGCTGCTTCCCCGCGAAGATCAAGCGCTGTTGGTCGGGAGG 76790
Query 131127 GATTCCTTCTTTGTC 131141
|||||| || || ||
Sbjct 76789 GATTCCCTCCTTATC 76775
>seq196
Length=101194
Score = 123 bits (136), Expect = 2e-23
Identities = 303/448 (68%), Gaps = 21/448 (5%)
Strand=Plus/Minus
Query 146049 AGATGTCCGCGTGCCACGGTTCAATATAGACGGCGAGGGCTCCTTTTCGTTTG---CCAC 146105
||||||| ||||||||||| || | |||| ||||| || || || ||| || |
Sbjct 13498 AGATGTCGGCGTGCCACGGCTCGAGGTAGATGGCGAACGCGCCCGGGCGCTTGTTGCCTC 13439
Query 146106 CCTGGTCCACGTGACGTACCATGTTGTTAAAGACGCGCACCATGGGCTCGACGCCGCTGG 146165
||||||| |||| || || ||||||| | ||||| | |||||| || |||| | |
Sbjct 13438 CCTGGTCGACGTAGCGCGCCGTGTTGTTGTACACGCGGAGCATGGGGATGATGCCGTTCG 13379
Query 146166 CTACGCCGTTCGTAGAGTTTATTCTGGTGCCGCGGGAGCGCACGCAATGAACATTCACGC 146225
||||||||| | || | ||| | ||| | | || | | ||
Sbjct 13378 AGTAGCCGTTCGTGCCGGCGATGTACGAACCGGTCGCGCGGATGTTGTGGATCGAGAGGC 13319
Query 146226 CGAGACCGCC-GCCGTACTTGGATAT-AGCGGCGCA-GTCGCCGAGCGTCTCGTAGATGC 146282
||| ||||| ||||| |||||| || |||| |||| ||| |||||| ||||||||||
Sbjct 13318 CGATGCCGCCTGCCGT-CTTGGAGATGAGCG-CGCACGTCTT-GAGCGTGTCGTAGATGC 13262
Query 146283 CGTCAATGCTATCG--CTTCGAATGCCGAGCAGAAAGCACGAGCACATCTGCGCCATCGG 146340
| || || ||| |||| || || || |||||||| | | ||||| |||
Sbjct 13261 CCTCGATCGAGTCGTCCTTC--ATCGTGACGAGGAAGCACGACGAGAGCTGCGGGTGCGG 13204
Query 146341 CGTCCCCGCCGAGAACAACGTCGGGCTCGCGTGCGTAAACATTTTTCGGCT----CATCA 146396
||| || || ||| | |||||| |||||||||||| | | ||| ||| |
Sbjct 13203 CGTGCCGGCGTTGAAGAGCGTCGGCGACGCGTGCGTAAA----GTACCGCTCCGACATGA 13148
Query 146397 TCCGATACGTTTCGATAGCGTCTTGAATGTCGTCGCCATGAATGCCCAAAGCGACGCGCA 146456
||||| ||||| ||| | |||||||||||| || ||||| | ||||||||||
Sbjct 13147 GGTTGTACGTCTCGATCGCGCGGTCAATGTCGTCGCCGTGGATGCCGACCGCGACGCGCA 13088
Query 146457 TGAGCATGTGTTGGGGCCGCTCCGCCAC 146484
|||||||||| || || ||||| |||||
Sbjct 13087 TGAGCATGTGCTGCGGTCGCTCGGCCAC 13060
Score = 104 bits (114), Expect = 2e-17
Identities = 353/548 (64%), Gaps = 4/548 (1%)
Strand=Plus/Minus
Query 144748 GGTGCGCAAATAGTACATGCCCGTTTTGAGTCCCGAGCGCCAAGTGTAGTCGTGTATCGA 144807
|||||| | |||||||||||||| ||||| || ||| |||| ||| |||||
Sbjct 14944 GGTGCGGAGGTAGTACATGCCCGTCTTGAGACCTTTCTTCCATCCGTAGAAGTGCATCGA 14885
Query 144808 CGTCATCAGAGCGTACGTGGGCTCCGCCACAAACAAATTTAGCGATTGGCTTTGATCAAT 144867
||| | | | || || ||| || | | || ||||| || || || ||
Sbjct 14884 CGTGAGCTGCGCCATGGTCGGCGACGAGAGGTGGACGTTGAGCGACTGCGACTGGTCGAT 14825
Query 144868 GAAAGCGTTGCGGTCGGCGGCCATCTCAATCATA--CGTTTGCATTTCATTTCCCAAGCG 144925
||| ||| |||||||||||| | || || | | ||||| || ||||| ||
Sbjct 14824 GAACGCGCCGCGGTCGGCGGCGAGGTCGATGACGACCTTTTGCGAG--ATCTCCCACACG 14767
Query 144926 GTCTTGTACAAACGTTTAATGTGGTCCGGAATGCCGTCAATCGCCTGAATCGACCCCTTG 144985
|||||||| | || || | | ||| || |||||| | ||| ||||| || |||
Sbjct 14766 GTCTTGTAGATGCGCTTGAGCTCGTCGGGGATGCCGGGGACGTTCTGGATCGAGCCGTTG 14707
Query 144986 TGCGCAAATATGGCGTTCCGCATTTCGGACGTGTACAGTTTTAACTTGATCAAGTCGTCA 145045
||||| | || | |||| ||| || | |||| | || | ||||
Sbjct 14706 TGCGCGATGATCGTGTTCTTCATCGCGTCGTTCCACAGGCCGCGGTCGACGAGGTCGCGG 14647
Query 145046 ATTAAGTACTGATTGACGACCTGAAACTCGCCGGCCAACACACGACGCAAATACACGTTA 145105
| | | | ||||||||||| ||||||||||| | || || || || | |||
Sbjct 14646 AGGAGCCAGGGGTTGACGACCTGGAACTCGCCGGCGAGGACGCGGCGGGTGTAGATGTTG 14587
Query 145106 GACGTGAAGGGTTCAAAAGACTCGTTATTGCCCAGGATTTGAGCGGTCGTTGCGGTGGGC 145165
|||||| | || || || | |||||| ||| ||||| || ||||| ||||| |||
Sbjct 14586 GACGTGTACGGCTCGAACGCCTCGTTGAAGCCGAGGATCTGGCTGGTCGAGGCGGTAGGC 14527
Query 145166 ATGTACGCCACCAATAATGAATTGCGCAGGCCGTGCTTCTTGATGTCTTCCTTTAGCGTA 145225
|| ||| || | || ||||| | |||||||| | || | ||||| | |
Sbjct 14526 ATCGGCGCGCACACGAGCGAGTTGCGGATGCCGTGCTGCGCAATCTTCTCCTTCAACTCG 14467
Query 145226 CCCCAATCCCATAGCGAAGTCGGCCTCACGTCCCACATGTCGTACTGCAAAATGCCCTCG 145285
|||| ||||| || |||||| | |||| ||||| ||||||||||| | ||| | |
Sbjct 14466 GCCCAGTCCCACAGGTCCGTCGGCGTGACGTTCCACAGATCGTACTGCAAGAGGCCGTGG 14407
Query 145286 CTGGCGGG 145293
|| |||||
Sbjct 14406 CTCGCGGG 14399
>seq165
Length=391853
Score = 111 bits (122), Expect = 1e-19
Identities = 118/156 (76%), Gaps = 0/156 (0%)
Strand=Plus/Minus
Query 131007 GCCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCT 131066
||| ||||| | ||||||||| | || | ||||||||| || || |||||||||||
Sbjct 99937 GCCTCCGCGGAGACGCAGCACGAGGTGGAGGGTCGACTCTTTCTGGATGTTGTAATCCGA 99878
Query 131067 CATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGG 131126
| || || |||||| |||||||| || ||| |||| | |||||||||||| |||||
Sbjct 99877 AAGAGTACGACCGTCCTCGAGCTGCTTCCCCGCGAAGATAAGACGCTGCTGGTCGGGAGG 99818
Query 131127 GATTCCTTCTTTGTCGGTGATTTTCTGCTTGAGCTG 131162
|||||| || ||||| ||| || ||||| |||
Sbjct 99817 GATTCCCTCCTTGTCCTGGATCTTGGCCTTGACCTG 99782
Score = 104 bits (114), Expect = 2e-17
Identities = 116/155 (75%), Gaps = 0/155 (0%)
Strand=Plus/Minus
Query 131008 CCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCTC 131067
|| ||||| | ||||||||| | || | ||||||||| || || |||||||||||
Sbjct 99496 CCTCCGCGGAGACGCAGCACGAGGTGGAGGGTCGACTCTTTCTGGATGTTGTAATCCGAA 99437
Query 131068 ATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGGG 131127
| || || ||||| |||||||| || ||| |||| | |||||||||||| ||||||
Sbjct 99436 AGAGTACGACCATCCTCGAGCTGCTTCCCCGCGAAGATAAGACGCTGCTGGTCGGGAGGG 99377
Query 131128 ATTCCTTCTTTGTCGGTGATTTTCTGCTTGAGCTG 131162
||||| || ||||| ||| || ||||| |||
Sbjct 99376 ATTCCCTCCTTGTCCTGGATCTTGGCCTTGACCTG 99342
Score = 82.4 bits (90), Expect = 7e-11
Identities = 212/312 (68%), Gaps = 11/312 (4%)
Strand=Plus/Minus
Query 46261 AACGAGCTGATATCGCGCGACGAGGGCCTGCATACGGACTTTGCGTGTCTCTACTA-TAA 46319
|||||||| || ||||||||||| || || || || |||||||| || ||| || |
Sbjct 48020 AACGAGCTCATCTCGCGCGACGAAGGTCTCCACACCGACTTTGCCTGCCTCCTCTTCTCG 47961
Query 46320 CAC-TCGCGTGCACGACAAGCTTGCGCCCGACACCGTGCTGAGCATGTTCAAGGAGGCGG 46378
||| ||| | || || | || | |||||||| || | |||| || |||||||
Sbjct 47960 CACCTCGAGCGC-CGCC---CTCAC-CCCGACACGGTCGAGCGCATCATCCGCGAGGCGG 47906
Query 46379 TGGCCATTGAGAAGGAGTTTTTTACGGCCGCACTGCCCGCTGCCCTGCTGGGCATGAAC- 46437
| | || ||| | ||||| | |||| || ||||||| || | |||||||||
Sbjct 47905 TCGAGATCGAGCAAGAGTTCCTCACGGAGGCGCTGCCCGTCAAGCTCATCGGCATGAACA 47846
Query 46438 GCACAGTCAATGTGCGACTACATCGAGTTTGTAGCGGACCGACTGCTCGT-GCAGCTTCA 46496
|| ||| ||||| | |||||||||||||| || ||||| |||| || ||| |||
Sbjct 47845 GCGACCTCA-TGTGCCAGTACATCGAGTTTGTTGCCGACCGCTTGCTTGTCGCA-CTTGG 47788
Query 46497 CCAGCCGAAGCATTTTCACGCGCGCAATCCATTTGAGTTTATGAACAACATCTCCCTGGA 46556
| | |||| | ||| | || || || || || ||| | | ||||| ||||
Sbjct 47787 CAACGAGAAGATCTACCACAAGGAGAACCCGTTCGACTTCATGGAGATGATCTCGATGGA 47728
Query 46557 GGGCAAAACTAA 46568
|||||| || ||
Sbjct 47727 GGGCAAGACCAA 47716
>seq172
Length=285481
Score = 95.1 bits (104), Expect = 1e-14
Identities = 102/135 (76%), Gaps = 0/135 (0%)
Strand=Plus/Plus
Query 131007 GCCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCT 131066
||| ||||| | ||| || || | || | |||||||||||| || |||||||| ||
Sbjct 52542 GCCGCCGCGGAGACGGAGGACGAGGTGGAGGGTCGACTCCTTCTGGATGTTGTAGTCCGA 52601
Query 131067 CATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGG 131126
| ||||| |||||| ||||||||||| ||| |||| | ||||||||||| || ||
Sbjct 52602 AAGAGTGCGGCCGTCCTCGAGCTGCTTGCCGGCGAAGATCAGGCGCTGCTGGTCGGGGGG 52661
Query 131127 GATTCCTTCTTTGTC 131141
||| || || |||||
Sbjct 52662 GATGCCCTCCTTGTC 52676
>seq215
Length=181685
Score = 93.3 bits (102), Expect = 4e-14
Identities = 116/159 (73%), Gaps = 0/159 (0%)
Strand=Plus/Minus
Query 131037 GGTCGACTCCTTTTGAATGTTGTAATCGCTCATGGTGCGCGAGTCCTCTAGCTGCTTGCC 131096
|||||||||||| || |||||||| || | |||||| |||||| |||||||||||
Sbjct 75631 GGTCGACTCCTTCTGGATGTTGTAGTCCGAGAGGGTGCGGCCGTCCTCGAGCTGCTTGCC 75572
Query 131097 TGCGTAGATTAAACGCTGCTGGTCCGGAGGGATTCCTTCTTTGTCGGTGATTTTCTGCTT 131156
||| |||| | ||||||||||| || ||||| || || ||||| ||| || |||
Sbjct 75571 GGCGAAGATGAGGCGCTGCTGGTCAGGGGGGATGCCCTCCTTGTCCTGGATCTTGGCCTT 75512
Query 131157 GAGCTGCTCCACAGTATCGGTGGACTCGATGTCGACGGT 131195
|| | || | || || | ||||||| |||| |||
Sbjct 75511 GACGTTGTCGATCGTGTCCGACGACTCGACCTCGAGGGT 75473
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 472011513765120
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