Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhodotorula_20toruloides_20[genbank_20GCA_5F000988875.1_202015-05- 06] 218 sequences; 20,361,044 total letters Query= NC_008291.1 Length=198050 Score E Sequences producing significant alignments: (Bits) Value seq196 98.7 1e-15 seq165 84.2 3e-11 >seq196 Length=101194 Score = 98.7 bits (108), Expect = 1e-15 Identities = 361/556 (65%), Gaps = 16/556 (3%) Strand=Plus/Minus Query 63052 CCACTCTCCGTCATCCTTCACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGCTATAAA 63111 ||| || |||| | || || || | ||| ||||| || || |||||||| || | || Sbjct 13617 CCAGTCGCCGTTCTGCTCGACACGCTCCATGAAGAGGTCGGGGATCCAAAGGGCAAAGAA 13558 Query 63112 TAGATCTCTGGTTCTATGTTCCTCGTTTCCTGTATTCTTTTTAAGATCGAGGAACGCCAT 63171 | || | | | ||||| || || ||||| || ||||||||| | | Sbjct 13557 CAAGTCGCGCGCGCGGACCTCCTCCTTGCCGTGGTTCTTGCGGAGGTCGAGGAACTCGAA 13498 Query 63172 AATATCAGAATGCCACGGTTCCAAGTATATGGCCATAACTCCAGGCCGTTTGTTTCCTCC 63231 || || | |||||||| || | ||| ||||| | | || || || ||||| ||||| Sbjct 13497 GATGTCGGCGTGCCACGGCTCGAGGTAGATGGCGAACGCGCCCGGGCGCTTGTTGCCTCC 13438 Query 63232 CTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATAATACCATTGGA 63291 ||| || | ||| | || ||||| || || || | | ||| || || || || || || Sbjct 13437 CTGGTCGACGTAGCGCGCCGTGTTGTTGTACACGCGGAGCATGGGGATGATGCCGTTCGA 13378 Query 63292 TGTA-CCATTGGTCCCTGAGATATAGCTTCCACTGGCACGAATATTACTAATTGATAGAC 63350 ||| || || || || | ||| || || | || || || || || || || | Sbjct 13377 -GTAGCCGTTCGTGCCGGCGATGTACGAACCGGTCGCGCGGATGTTGTGGATCGAGAGGC 13319 Query 63351 CTATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAA-CGTATCATAGATGCCC 63409 | || || |||||| | || ||||| | ||||| ||| || | ||| || ||||||||| Sbjct 13318 CGATGCCGCCTGCCGTCTTGGAGATGAGCGCGCA-CGTCTTGAGCGTGTCGTAGATGCCC 13260 Query 63410 TCTATACTATCATCCATCAT-GTTAAGTAGAA-AACAGCTAGACATTTGGTGACGACTAG 63467 || || || ||| |||| || | | ||| || | ||| | || || | | Sbjct 13259 TCGATCGAGTCGTCCTTCATCGTGACGAGGAAGCACGACGAGAGCTGCGGGTGCGGC--G 13202 Query 63468 TTCCCGCATTAAATAAGGTAGGAGAAGCGTGAGTAAACCATTTTTCAGAAAGTAGATTGT 63527 | || || || || | || || || ||||| ||||| | || || | || |||| Sbjct 13201 TGCCGGCGTTGAAGAGCGTCGGCGACGCGTGCGTAAAGTACCGCTCCGACATGAGGTTGT 13142 Query 63528 ACGTCTCAATAGCTGAGTCTATATC----CCATTGATGAATTCCTACTGCGACACGCATT 63583 ||||||| || || ||| || || || | |||| || || ||||| ||||| Sbjct 13141 ACGTCTCGATCGCGCGGTCAATGTCGTCGCCGTGGATG----CCGACCGCGACGCGCATG 13086 Query 63584 AACATGTGCTGAGGTC 63599 | ||||||||| |||| Sbjct 13085 AGCATGTGCTGCGGTC 13070 >seq165 Length=391853 Score = 84.2 bits (92), Expect = 3e-11 Identities = 116/162 (72%), Gaps = 3/162 (2%) Strand=Plus/Plus Query 32708 GGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGACGCAAATGA 32767 ||| || |||||||||||||| | ||| ||||| || ||||| || |||||||| || || Sbjct 48118 GGAGAAGGTGAGTCCGGGCATCAAGCCGCGCTTCTTGAGCCAGAAGATGGACGCGAACGA 48177 Query 32768 TCCAGAAAAGAAAATTCCTTCTACTGCCGCAAAGGCAATAAGTCTCTCTCCATAACCGGC 32827 || || ||||| || || || || || || || || | || | ||| || | ||| Sbjct 48178 GCCGGAGAAGAAGATGCCCTCGACGGCGGCGAACGCGACGAGACGCTCGCCGAAGACGGA 48237 Query 32828 GCTGTCAT---GTATCCACTTTTGAGCCCAATCGGCCTTCTT 32866 || ||| | ||||| | | ||||| ||||||||||| Sbjct 48238 GCGGTCGTCCGAGATCCAGGTGAGCGCCCACTCGGCCTTCTT 48279 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 633630273352800