Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Rhodotorula_20toruloides_20[genbank_20GCA_5F000988875.1_202015-05-
06] 218 sequences; 20,361,044 total letters
Query= NC_008603.1
Length=321240
Score E
Sequences producing significant alignments: (Bits) Value
seq208 114 3e-20
seq192 114 3e-20
seq186 114 3e-20
seq163 114 3e-20
seq139 114 3e-20
seq52 114 3e-20
seq162 100 6e-16
seq113 96.9 7e-15
seq196 95.1 2e-14
seq199 86.0 1e-11
seq175 86.0 1e-11
>seq208
Length=337538
Score = 114 bits (126), Expect = 3e-20
Identities = 69/73 (95%), Gaps = 0/73 (0%)
Strand=Plus/Minus
Query 142503 AGCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAG 142562
|||||||||||||||||||||||||| | ||||||||||||| |||||||||||||||||
Sbjct 71850 AGCCCGGTTAGCTCAGTCGGTAGAGCACCAGACTCTTAATCTGGTGGTCGTGGGTTCGAG 71791
Query 142563 CCCCACATCGGGC 142575
|||||||| ||||
Sbjct 71790 CCCCACATTGGGC 71778
>seq192
Length=246786
Score = 114 bits (126), Expect = 3e-20
Identities = 69/73 (95%), Gaps = 0/73 (0%)
Strand=Plus/Minus
Query 142503 AGCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAG 142562
|||||||||||||||||||||||||| | ||||||||||||| |||||||||||||||||
Sbjct 134553 AGCCCGGTTAGCTCAGTCGGTAGAGCACCAGACTCTTAATCTGGTGGTCGTGGGTTCGAG 134494
Query 142563 CCCCACATCGGGC 142575
|||||||| ||||
Sbjct 134493 CCCCACATTGGGC 134481
>seq186
Length=34438
Score = 114 bits (126), Expect = 3e-20
Identities = 69/73 (95%), Gaps = 0/73 (0%)
Strand=Plus/Minus
Query 142503 AGCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAG 142562
|||||||||||||||||||||||||| | ||||||||||||| |||||||||||||||||
Sbjct 625 AGCCCGGTTAGCTCAGTCGGTAGAGCACCAGACTCTTAATCTGGTGGTCGTGGGTTCGAG 566
Query 142563 CCCCACATCGGGC 142575
|||||||| ||||
Sbjct 565 CCCCACATTGGGC 553
>seq163
Length=242995
Score = 114 bits (126), Expect = 3e-20
Identities = 69/73 (95%), Gaps = 0/73 (0%)
Strand=Plus/Minus
Query 142503 AGCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAG 142562
|||||||||||||||||||||||||| | ||||||||||||| |||||||||||||||||
Sbjct 229726 AGCCCGGTTAGCTCAGTCGGTAGAGCACCAGACTCTTAATCTGGTGGTCGTGGGTTCGAG 229667
Query 142563 CCCCACATCGGGC 142575
|||||||| ||||
Sbjct 229666 CCCCACATTGGGC 229654
Score = 114 bits (126), Expect = 3e-20
Identities = 69/73 (95%), Gaps = 0/73 (0%)
Strand=Plus/Plus
Query 142503 AGCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAG 142562
|||||||||||||||||||||||||| | ||||||||||||| |||||||||||||||||
Sbjct 242694 AGCCCGGTTAGCTCAGTCGGTAGAGCACCAGACTCTTAATCTGGTGGTCGTGGGTTCGAG 242753
Query 142563 CCCCACATCGGGC 142575
|||||||| ||||
Sbjct 242754 CCCCACATTGGGC 242766
>seq139
Length=271668
Score = 114 bits (126), Expect = 3e-20
Identities = 69/73 (95%), Gaps = 0/73 (0%)
Strand=Plus/Plus
Query 142503 AGCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAG 142562
|||||||||||||||||||||||||| | ||||||||||||| |||||||||||||||||
Sbjct 92220 AGCCCGGTTAGCTCAGTCGGTAGAGCACCAGACTCTTAATCTGGTGGTCGTGGGTTCGAG 92279
Query 142563 CCCCACATCGGGC 142575
|||||||| ||||
Sbjct 92280 CCCCACATTGGGC 92292
>seq52
Length=42957
Score = 114 bits (126), Expect = 3e-20
Identities = 69/73 (95%), Gaps = 0/73 (0%)
Strand=Plus/Minus
Query 142503 AGCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAG 142562
|||||||||||||||||||||||||| | ||||||||||||| |||||||||||||||||
Sbjct 38459 AGCCCGGTTAGCTCAGTCGGTAGAGCACCAGACTCTTAATCTGGTGGTCGTGGGTTCGAG 38400
Query 142563 CCCCACATCGGGC 142575
|||||||| ||||
Sbjct 38399 CCCCACATTGGGC 38387
>seq162
Length=517468
Score = 100 bits (110), Expect = 6e-16
Identities = 154/217 (71%), Gaps = 2/217 (1%)
Strand=Plus/Plus
Query 279699 GGTTCTCTGTCGGGTGGTTGGAAGATGAAGCTGGCCCTCACTCGCGCCATTCTACTGCG- 279757
|| || || || ||||| ||||||||||| || || ||| | |||||||| || || ||
Sbjct 442535 GGCTCCCTCTCCGGTGGATGGAAGATGAAACTCGCTCTCGCCCGCGCCATCCT-CTTCGA 442593
Query 279758 TGCCGATGTCCTACTGCTTGATGAGCCAACCAACCACATGGACACCACCAACGTAGCCTG 279817
||||| |||| || || || ||||| |||||||| ||||| | |||||| |||||
Sbjct 442594 GGCCGACATCCTCCTCCTCGACGAGCCGACCAACCATTTGGACGTCCTCAACGTCGCCTG 442653
Query 279818 GCTAGTGTCCTACCTAACCAGTCTGAAGAATGTTTCTTCCCTCATTGTCTCTCACGACTC 279877
||| | | |||||| | || |||| | || |||| ||||| ||||||||
Sbjct 442654 GCTCGAGAACTACCTCTGCTCGCTCAAGACCTGCACCTCGATCATCGTCTCGCACGACTC 442713
Query 279878 TGGCTTCCTAGATGCCGTGTGCTCTGCCATCATTCAC 279914
||| ||||| | ||| ||| | | |||| | |||
Sbjct 442714 TGGTTTCCTCAACAACGTCTGCACCGACATCCTCCAC 442750
Score = 95.1 bits (104), Expect = 2e-14
Identities = 128/176 (73%), Gaps = 3/176 (2%)
Strand=Plus/Plus
Query 280173 GTCATTGGACCCAATGGTGCGGGTAAGTCTACCCTAATCAAAGTCCTGACTGGCGAGACC 280232
||| | || || || ||| | || ||||| ||||| |||| |||| | |||||||
Sbjct 443107 GTCCTCGGCCCGAACGGTTCCGGCAAGTCGACCCTCGTCAAGCTCCTCGTCGCCGAGACC 443166
Query 280233 CAGGCCACTGAGGG--GTCCGTT-TGGAAGCATCCCAACATGCGGATGGCTTACGTCGCT 280289
|| ||| |||| || | | |||||||| || ||| || || | ||||||||
Sbjct 443167 GAGCCCAACAAGGGCGGTGAGGTGTGGAAGCACCCGAACTTGGTCATCGGCTACGTCGCC 443226
Query 280290 CAGCACGCTTTCCACCACATCGAGAACCACCTGGACATGACTCCTAACCAATACAT 280345
|||||||| |||||||||||||| ||||||| |||| |||||| ||| |||||
Sbjct 443227 CAGCACGCCTTCCACCACATCGACCACCACCTCGACAAGACTCCGCTCCAGTACAT 443282
Score = 87.8 bits (96), Expect = 4e-12
Identities = 100/132 (76%), Gaps = 2/132 (2%)
Strand=Plus/Plus
Query 280680 GGTCTGGACCCCGAGTTTACAACTCACT-CTCGCATTCGCGGTCTTTCTGGAGGCCAGAA 280738
||||| || |||||||| || || ||| | || || |||||||| || ||||| |||||
Sbjct 443632 GGTCTCGAGCCCGAGTTCACCACCCACAACACG-ATGCGCGGTCTCTCCGGAGGTCAGAA 443690
Query 280739 GGTCAAACTTGTCATCGGAGCAGCTCTGTGGCAACACCCTCACGTGATCGTTCTCGACGA 280798
|||||| | ||| ||| || || |||| | ||||||||| || | ||||||||
Sbjct 443691 GGTCAAGGTCGTCCTCGCCGCCGCCACCTGGCGCCGCCCTCACGTCGTCATCCTCGACGA 443750
Query 280799 GCCTACCAACTA 280810
||| ||||||||
Sbjct 443751 GCCCACCAACTA 443762
>seq113
Length=352600
Score = 96.9 bits (106), Expect = 7e-15
Identities = 131/180 (73%), Gaps = 2/180 (1%)
Strand=Plus/Minus
Query 280179 GGACCCAATGGTGCGGGTAAGTCTACCCTAATCAAAGTCCTGACTGGCGAGACCCAGGCC 280238
|| || || || ||||| ||||| ||| | ||||| | ||||||||||||| | ||
Sbjct 172671 GGCCCGAACGGCGCGGGCAAGTCGACCTTGATCAAGCTGTTGACTGGCGAGACGCTCCCC 172612
Query 280239 -ACTGAGGGGTCCGTTTGGAAGCATCCCAACATGCGGATGGCTTACGTCGCTCAGCACGC 280297
||| ||| ||| |||||| || ||| | || || || |||||||| ||||||||
Sbjct 172611 GACTC-GGGACGCGTCGAGAAGCACCCGAACCTCCGAATCGCCTACGTCGCCCAGCACGC 172553
Query 280298 TTTCCACCACATCGAGAACCACCTGGACATGACTCCTAACCAATACATTCAGTGGCGCTA 280357
||||||||||||||| | ||||| || | | | || || ||||| |||||||||
Sbjct 172552 CTTCCACCACATCGAGCAGCACCTCGAGAAGTCGGCTGTGCAGTACATCATGTGGCGCTA 172493
>seq196
Length=101194
Score = 95.1 bits (104), Expect = 2e-14
Identities = 262/399 (66%), Gaps = 2/399 (1%)
Strand=Plus/Minus
Query 293032 GTTTTAAGACCCTTCTTCCATGCGTAGAACAGCATAGATGTCATAGACTTCAGTGTGGGA 293091
|| || ||||| ||||||||| ||||||| |||| || || | | || || ||
Sbjct 14922 GTCTTGAGACCTTTCTTCCATCCGTAGAAGTGCATCGACGTGAGCTGCGCCATGGTCGGC 14863
Query 293092 GTGGCCAGGAAAAGGTTCATGCTCTGCGTCTGATCGACAAAGGCACCACGATCAGCAGCG 293151
| | ||| | ||| | ||||| ||| |||| || || || || || || |||
Sbjct 14862 GACGAGAGGTGGACGTTGAGCGACTGCGACTGGTCGATGAACGCGCCGCGGTCGGCGGCG 14803
Query 293152 AGGTCAATCACTGTCTTCATAGAGATCTCCCACGATGTCTTGTACACTGC-CTTGACATC 293210
||||| || || ||| |||||||||||| |||||||| | ||| ||||| ||
Sbjct 14802 AGGTCGATGACGACCTTTTGCGAGATCTCCCACACGGTCTTGTAGA-TGCGCTTGAGCTC 14744
Query 293211 AGGATGAATGCCAATAACCTTCTGGATAGACCCTCCGTTGGCAATAATCTGGTTCTTCAT 293270
| ||||| || |||||||| || || || || || ||| |||||||||
Sbjct 14743 GTCGGGGATGCCGGGGACGTTCTGGATCGAGCCGTTGTGCGCGATGATCGTGTTCTTCAT 14684
Query 293271 TGTCTCGGACCAAGTCCCACGAGCAATGAGCTCGCGGACAAGGTAAGAGTTGACAACGGG 293330
| ||| ||| || || | | ||| ||||||| || | | |||||| || |
Sbjct 14683 CGCGTCGTTCCACAGGCCGCGGTCGACGAGGTCGCGGAGGAGCCAGGGGTTGACGACCTG 14624
Query 293331 GAACTCACCAGCGAGAGTGCGACGGCTGTAAATGTTCGAAGTGATGGGTTCGGCTGCCTC 293390
|||||| || ||||| ||| ||| |||| ||||| || ||| || ||| |||||
Sbjct 14623 GAACTCGCCGGCGAGGACGCGGCGGGTGTAGATGTTGGACGTGTACGGCTCGAACGCCTC 14564
Query 293391 AACAGACCCGCAAATCTGAGCAGTAGATGCGGTAGGCAT 293429
| ||| ||||| || || |||||||||||
Sbjct 14563 GTTGAAGCCGAGGATCTGGCTGGTCGAGGCGGTAGGCAT 14525
>seq199
Length=43429
Score = 86.0 bits (94), Expect = 1e-11
Identities = 144/206 (70%), Gaps = 2/206 (1%)
Strand=Plus/Plus
Query 217837 TGCACTCTCATCCTGACAGAGGGAGACTCAGCTGCCACGCTGGCAACCGCTGGTCTTGCC 217896
||||| ||||||||||| || |||||||| || |||| || | | ||||| |||
Sbjct 34555 TGCACGCTCATCCTGACCGAAGGAGACTCGGCCAAGGCGCTCGCCGTCTCGGGTCTCGCC 34614
Query 217897 GTGGTGGGTCGTGAAAGGTATGGTATCTTCCCCCTCCGTGGTAAGCTGCTCAACGTGCGC 217956
|| || || || || | || || |||||||||| || || ||||| |||||||| |||
Sbjct 34615 GTCGTCGGGCGCGACAACTACGGCGTCTTCCCCCTTCGCGGAAAGCTCCTCAACGTCCGC 34674
Query 217957 GATGCCTCGGTTTCAAGCATTGCT-GCAAATGCAGAGATTGCCGCCATCAAGCAAATCCT 218015
|| || | | |||| | || | || || ||||| || |||||||| ||| |
Sbjct 34675 GAGGCGACCG-GCAAAGCGCTCCTCGAGAACGCCGAGATCCAGGCGATCAAGCAGATCAT 34733
Query 218016 GGGTCTTCAGGTTGGAAAGACTTACA 218041
||| | ||| || ||||| ||||
Sbjct 34734 GGGCTTGCAGCAGGGCAAGACGTACA 34759
>seq175
Length=283523
Score = 86.0 bits (94), Expect = 1e-11
Identities = 103/140 (74%), Gaps = 0/140 (0%)
Strand=Plus/Minus
Query 251577 CTTGCCCTCCAGAGAGATTAGCTCCATGAAGTCGAAGGGGTTTGTGGCATTGTACTGCTT 251636
||||||||||| ||||| | |||||| |||||||| ||||| |||||||||| ||||
Sbjct 258696 CTTGCCCTCCATCGAGATCATCTCCATAAAGTCGAACGGGTTCTCGGCATTGTACAGCTT 258637
Query 251637 GGGATGGCCAAGTGCTACGAAGATGCGGTCTGCCACAAACTCCAGATACTGTCCCATCAG 251696
| ||||| || || | | ||||| || || ||||| | ||||||| ||| ||
Sbjct 258636 CTCGTTCCCAAGCGCGACAAGCAATCGGTCCGCGACGAACTCGATGTACTGTCGCATGAG 258577
Query 251697 TTCAGAGTTCATGCCAATCA 251716
| ||||||||| ||||
Sbjct 258576 GGTCGCGTTCATGCCGATCA 258557
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1027833929123338
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |