Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhodotorula_20toruloides_20[genbank_20GCA_5F000988875.1_202015-05- 06] 218 sequences; 20,361,044 total letters Query= NC_008724.1 Length=288047 Score E Sequences producing significant alignments: (Bits) Value seq207 161 2e-34 seq196 159 6e-34 seq162 141 2e-28 seq175 100 5e-16 seq208 98.7 2e-15 seq192 98.7 2e-15 seq186 98.7 2e-15 seq163 98.7 2e-15 seq139 98.7 2e-15 seq52 98.7 2e-15 >seq207 Length=219063 Score = 161 bits (178), Expect = 2e-34 Identities = 172/227 (76%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 68235 CCTCCGCGAAGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAG 68294 || ||||| | | ||| |||| || || || ||||| || |||||||| || ||| | Sbjct 76613 CCACCGCGCAACCTCAACACCAGATGGAGTGTAGACTCCTTCTGGATGTTGTAGTCGCTG 76554 Query 68295 AGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGA 68354 || || | || || || | |||||| || ||||| || | | || |||||||| || Sbjct 76553 AGCGTGCGACCGTCCTCAAGCTGCTTGCCCGCGAAGATCAAGCGCTGCTGGTCGGGAGGG 76494 Query 68355 ATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACT 68414 || || |||||||| |||||||| ||||||||| ||||||||||| | || || || Sbjct 76493 ATTCCCTCCTTGTCCTGAATCTTGGCCTTGACGTTGTCGATGGTGTCCGAAGACTCGACC 76434 Query 68415 TCCAAGGTGATGGTTTTTCCCGTGAGGGTCTTGACGAATATCTGCAT 68461 || | ||||||||| || || ||||||||||||||||| |||||||| Sbjct 76433 TCGAGGGTGATGGTCTTGCCGGTGAGGGTCTTGACGAAGATCTGCAT 76387 Score = 132 bits (146), Expect = 9e-26 Identities = 144/191 (75%), Gaps = 0/191 (0%) Strand=Plus/Minus Query 68235 CCTCCGCGAAGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAG 68294 |||||||| || |||| || | ||| || || |||||||| ||||| |||||||| || Sbjct 76908 CCTCCGCGGAGACGCAGCACGAGGTGGAGGGTCGACTCTTTCTGGATATTATAATCCGAA 76849 Query 68295 AGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGA 68354 || || | || || || | ||||||||| ||||| || | | ||||||||||| || Sbjct 76848 AGAGTACGACCGTCCTCGAGCTGCTTCCCCGCGAAGATCAAGCGCTGTTGGTCGGGAGGG 76789 Query 68355 ATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACT 68414 || || ||||| || |||||||| ||||||||| ||||||||||| | || || || Sbjct 76788 ATTCCCTCCTTATCCTGAATCTTGGCCTTGACGTTGTCGATGGTGTCGGACGACTCGACC 76729 Query 68415 TCCAAGGTGAT 68425 || | ||||| Sbjct 76728 TCGAGAGTGAT 76718 >seq196 Length=101194 Score = 159 bits (176), Expect = 6e-34 Identities = 286/418 (68%), Gaps = 0/418 (0%) Strand=Plus/Minus Query 30824 GTAATACATAAGCGTCTTGAGACCCTTCTTCCATGCATAGAACAGCATGGAAGACATTGA 30883 ||| ||||| |||||||||||| ||||||||| | ||||| |||| || | | Sbjct 14935 GTAGTACATGCCCGTCTTGAGACCTTTCTTCCATCCGTAGAAGTGCATCGACGTGAGCTG 14876 Query 30884 CTTCATAGAGGGCGCTGCAACGAAGAGGTTCATGCTCTGTGTCTGGTCAACAAACGGACC 30943 | ||| | |||| | | | || ||| | ||| | |||||| | |||| || Sbjct 14875 CGCCATGGTCGGCGACGAGAGGTGGACGTTGAGCGACTGCGACTGGTCGATGAACGCGCC 14816 Query 30944 GCGGTCTGCTGCAAGGTCAATGACGGTCTTCATAGACAGCTCCCATGCGGTCTTGTAGAT 31003 |||||| || || ||||| |||||| ||| || | |||||| ||||||||||||| Sbjct 14815 GCGGTCGGCGGCGAGGTCGATGACGACCTTTTGCGAGATCTCCCACACGGTCTTGTAGAT 14756 Query 31004 TGCCTTGAGCTCAGGGTGGATGCCAATGACACGTTGGATGGACCCCCCGTTGGCAATAAT 31063 ||||||||| | ||||||| ||| ||||| || || || || || || Sbjct 14755 GCGCTTGAGCTCGTCGGGGATGCCGGGGACGTTCTGGATCGAGCCGTTGTGCGCGATGAT 14696 Query 31064 CTGGTTCTTCATGGCCTCGGACCACGTGCCACGAGCGATGAGGTCGCGCACGAGGTAGTT 31123 | ||||||||| || ||| |||| ||| || ||| ||||||||| | ||| || Sbjct 14695 CGTGTTCTTCATCGCGTCGTTCCACAGGCCGCGGTCGACGAGGTCGCGGAGGAGCCAGGG 14636 Query 31124 GTTGACCACAGGGAACTCTCCAGCAAGGGTCCGGCGGCTGTACAGATTAGAAGTGATCGG 31183 |||||| || ||||||| || || ||| |||||| |||| | || || ||| ||| Sbjct 14635 GTTGACGACCTGGAACTCGCCGGCGAGGACGCGGCGGGTGTAGATGTTGGACGTGTACGG 14576 Query 31184 CTCCATAGCCTCTACGGACCCGCAGATTTGCGCGGTGGATGCGGTGGGCATCAGCGCG 31241 ||| | ||||| | | ||| ||| || ||| || ||||| |||||| ||||| Sbjct 14575 CTCGAACGCCTCGTTGAAGCCGAGGATCTGGCTGGTCGAGGCGGTAGGCATCGGCGCG 14518 >seq162 Length=517468 Score = 141 bits (156), Expect = 2e-28 Identities = 374/559 (67%), Gaps = 28/559 (5%) Strand=Plus/Minus Query 225449 AGGAAGCCAGAGTCGTGGGACACAATGATGGACGACACGTTCGTCAGGCCCTTGAGGTGC 225508 ||||| ||||||||||| || || ||||| || | | || | || ||||| Sbjct 442722 AGGAAACCAGAGTCGTGCGAGACGATGATCGAGGTGCAGGTCTTGAGCGAGCAGAGGTAG 442663 Query 225509 GTGATGAGCCATGCCACGTTGCTGACGTCCATGTGGTTTGTAGGTTCGTCCAGAAGCAGG 225568 | |||||| || |||||| |||||||| ||||| || || ||||| || || ||| Sbjct 442662 TTCTCGAGCCAGGCGACGTTGAGGACGTCCAAATGGTTGGTCGGCTCGTCGAGGAGGAGG 442603 Query 225569 ATGTCAGCATCAATGAGGATGGCGCGCGTGAGAGACAGCTTCATTTTCCAGCCCCCGGAC 225628 ||||| || || | |||||||||||| | ||||| || ||||| ||||| || ||||| Sbjct 442602 ATGTCGGCCTCGAAGAGGATGGCGCGGGCGAGAGCGAGTTTCATCTTCCATCCACCGGAG 442543 Query 225629 AGGGAGCCGATTGAAACAGAGTGCTTA-GCT--TCGTCAAAGCCG---TACTCCAGGA-G 225681 ||||||||||| | | | | || | ||| | |||||| |||| |||| | Sbjct 442542 AGGGAGCCGATGG---CGGCCTCCTGACGCTCGCGGGTGAAGCCGACCGACTCGAGGACG 442486 Query 225682 CGTCTGGA-TAAT--GCGCTCGGGAGAGCTGCGAGCGGCAACGTTGGGGTCGGACGAGAG 225738 | | | | | | ||||| ||| | |||| | | ||| || || |||||| Sbjct 442485 CTGCGGCACTCGTCCTCGCTCTTGAG-GATGCGCTTG---TCCTTGAGGACGAACGAGAC 442430 Query 225739 GTAATCATATACGGTCATGTCCGAGACAGACG-CGTCAATGTCGTGGTCCACGTACACCG 225797 | ||| | | |||| | | || |||| | |||||| || ||||| | || Sbjct 442429 G--ATC-------GAGTTCTCCGTCTC-GTCGCCGTCGACGTCGTGCTCGACGTAGAACG 442380 Query 225798 TCCGGAGCTGAGAAGCATCGGGGAAGCCCTCCAGCTGGCCATTTGCAATCGCACGGAGCA 225857 | |||| || | |||||||||||| | ||| || || | |||||||| | | Sbjct 442379 TGCGGACCTCGTCGGGGGAGGGGAAGCCCTCGACCTGTCCGTTGTCGATCGCACGCATAA 442320 Query 225858 GGGTACTCTTGCCCGCGCCGTTGGGACCGATGAGGCCGTAATGATTCCCGCGCTTGATGT 225917 |||| |||||||| |||||| | || ||| ||||| | | || ||||||| Sbjct 442319 GGGTCGACTTGCCCGAACCGTTGCGTCCACAGAGACCGTAGCGGTGTCCACGCTTGAGAC 442260 Query 225918 TGAGGCGCGTGGAGTTCAGGAGGATCTTGCCACCATAGGCAAGGGAGAACTCGCAATCGC 225977 |||| | | ||| ||||||||||| | || || || || |||||| ||| | || Sbjct 442259 GGAGGGTAGCCGTGTTGAGGAGGATCTTTGCGCCGTAAGCGAGCGAGAACGTGCAGTTGC 442200 Query 225978 ACAGGTCCTCACCCTCCTC 225996 |||||||||| |||||||| Sbjct 442199 ACAGGTCCTCGCCCTCCTC 442181 Score = 93.3 bits (102), Expect = 8e-14 Identities = 123/170 (72%), Gaps = 3/170 (2%) Strand=Plus/Minus Query 224990 ATGTACTGGTTGGGGGTCATGTCCAGGTGGTTCTCAATATGGTGGAAAGCATGCTGGGCT 225049 ||||||||| || ||| |||| ||||||| || || |||||||| || |||||||| Sbjct 443282 ATGTACTGGAGCGGAGTCTTGTCGAGGTGGTGGTCGATGTGGTGGAAGGCGTGCTGGGCG 443223 Query 225050 ACGTACGCCATGCGCATGTTGGGATGCTTCCACA---CAGAGCCCCGAGTCGGTTGTGCC 225106 ||||| | ||| || ||| || |||||||||| || |||| | || | | | Sbjct 443222 ACGTAGCCGATGACCAAGTTCGGGTGCTTCCACACCTCACCGCCCTTGTTGGGCTCGGTC 443163 Query 225107 TCGCCGGTGAGGACCTTGATGAGCGTAGTCTTGCCCGCACCATTGGGGCC 225156 ||| || ||||| ||||| ||| || | |||||| | ||| || ||||| Sbjct 443162 TCGGCGACGAGGAGCTTGACGAGGGTCGACTTGCCGGAACCGTTCGGGCC 443113 >seq175 Length=283523 Score = 100 bits (110), Expect = 5e-16 Identities = 149/208 (72%), Gaps = 4/208 (2%) Strand=Plus/Minus Query 9981 TTGGACTTGCCCTCGAGGGAAATGAGCTCCATGAAGTCAAAGGGGTTCTCGGCGCCAAAC 10040 |||| ||||||||| | || || | |||||| ||||| || ||||||||||| || Sbjct 258701 TTGGTCTTGCCCTCCATCGAGATCATCTCCATAAAGTCGAACGGGTTCTCGGCATTGTAC 258642 Query 10041 TGCTTGGGGTAACCGAGTGCTGTGAA--AATGCGGTCAGCCACGAACTCGATGTACTGGC 10098 |||| || || || || | || ||| ||||| || ||||||||||||||||| | Sbjct 258641 AGCTTCTCGTTCCCAAGCGC-GACAAGCAAT-CGGTCCGCGACGAACTCGATGTACTGTC 258584 Query 10099 TCATCAGGTCCGAGTTCATGCCAATCATGCGGCAGGGGATGGCGTCGCAAATGAAGTCCT 10158 ||| ||| || ||||||||| |||| || | ||| | |||||| | ||| |||| Sbjct 258583 GCATGAGGGTCGCGTTCATGCCGATCAAGCCGACGGGCAAGGCGTCCGTCAGGAATTCCT 258524 Query 10159 TTTCGTTGGCGACCGCTTCCTCGACGAT 10186 ||| | |||| ||||| ||| ||| Sbjct 258523 GCTCGATCTCGACGGCTTCGGCGATGAT 258496 >seq208 Length=337538 Score = 98.7 bits (108), Expect = 2e-15 Identities = 65/72 (90%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 84456 GCCCGGTTAGCTCAGTCGGCAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAGC 84515 ||||||||||||||||||| ||||| | || ||||||| || |||||||||||||||||| Sbjct 71849 GCCCGGTTAGCTCAGTCGGTAGAGCACCAGACTCTTAATCTGGTGGTCGTGGGTTCGAGC 71790 Query 84516 CCCACATCGGGC 84527 ||||||| |||| Sbjct 71789 CCCACATTGGGC 71778 >seq192 Length=246786 Score = 98.7 bits (108), Expect = 2e-15 Identities = 65/72 (90%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 84456 GCCCGGTTAGCTCAGTCGGCAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAGC 84515 ||||||||||||||||||| ||||| | || ||||||| || |||||||||||||||||| Sbjct 134552 GCCCGGTTAGCTCAGTCGGTAGAGCACCAGACTCTTAATCTGGTGGTCGTGGGTTCGAGC 134493 Query 84516 CCCACATCGGGC 84527 ||||||| |||| Sbjct 134492 CCCACATTGGGC 134481 >seq186 Length=34438 Score = 98.7 bits (108), Expect = 2e-15 Identities = 65/72 (90%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 84456 GCCCGGTTAGCTCAGTCGGCAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAGC 84515 ||||||||||||||||||| ||||| | || ||||||| || |||||||||||||||||| Sbjct 624 GCCCGGTTAGCTCAGTCGGTAGAGCACCAGACTCTTAATCTGGTGGTCGTGGGTTCGAGC 565 Query 84516 CCCACATCGGGC 84527 ||||||| |||| Sbjct 564 CCCACATTGGGC 553 >seq163 Length=242995 Score = 98.7 bits (108), Expect = 2e-15 Identities = 65/72 (90%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 84456 GCCCGGTTAGCTCAGTCGGCAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAGC 84515 ||||||||||||||||||| ||||| | || ||||||| || |||||||||||||||||| Sbjct 229725 GCCCGGTTAGCTCAGTCGGTAGAGCACCAGACTCTTAATCTGGTGGTCGTGGGTTCGAGC 229666 Query 84516 CCCACATCGGGC 84527 ||||||| |||| Sbjct 229665 CCCACATTGGGC 229654 Score = 98.7 bits (108), Expect = 2e-15 Identities = 65/72 (90%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 84456 GCCCGGTTAGCTCAGTCGGCAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAGC 84515 ||||||||||||||||||| ||||| | || ||||||| || |||||||||||||||||| Sbjct 242695 GCCCGGTTAGCTCAGTCGGTAGAGCACCAGACTCTTAATCTGGTGGTCGTGGGTTCGAGC 242754 Query 84516 CCCACATCGGGC 84527 ||||||| |||| Sbjct 242755 CCCACATTGGGC 242766 >seq139 Length=271668 Score = 98.7 bits (108), Expect = 2e-15 Identities = 65/72 (90%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 84456 GCCCGGTTAGCTCAGTCGGCAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAGC 84515 ||||||||||||||||||| ||||| | || ||||||| || |||||||||||||||||| Sbjct 92221 GCCCGGTTAGCTCAGTCGGTAGAGCACCAGACTCTTAATCTGGTGGTCGTGGGTTCGAGC 92280 Query 84516 CCCACATCGGGC 84527 ||||||| |||| Sbjct 92281 CCCACATTGGGC 92292 >seq52 Length=42957 Score = 98.7 bits (108), Expect = 2e-15 Identities = 65/72 (90%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 84456 GCCCGGTTAGCTCAGTCGGCAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAGC 84515 ||||||||||||||||||| ||||| | || ||||||| || |||||||||||||||||| Sbjct 38458 GCCCGGTTAGCTCAGTCGGTAGAGCACCAGACTCTTAATCTGGTGGTCGTGGGTTCGAGC 38399 Query 84516 CCCACATCGGGC 84527 ||||||| |||| Sbjct 38398 CCCACATTGGGC 38387 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 921619888578960