Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Rhodotorula_20toruloides_20[genbank_20GCA_5F000988875.1_202015-05-
06] 218 sequences; 20,361,044 total letters
Query= NC_008724.1
Length=288047
Score E
Sequences producing significant alignments: (Bits) Value
seq207 161 2e-34
seq196 159 6e-34
seq162 141 2e-28
seq175 100 5e-16
seq208 98.7 2e-15
seq192 98.7 2e-15
seq186 98.7 2e-15
seq163 98.7 2e-15
seq139 98.7 2e-15
seq52 98.7 2e-15
>seq207
Length=219063
Score = 161 bits (178), Expect = 2e-34
Identities = 172/227 (76%), Gaps = 0/227 (0%)
Strand=Plus/Minus
Query 68235 CCTCCGCGAAGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAG 68294
|| ||||| | | ||| |||| || || || ||||| || |||||||| || ||| |
Sbjct 76613 CCACCGCGCAACCTCAACACCAGATGGAGTGTAGACTCCTTCTGGATGTTGTAGTCGCTG 76554
Query 68295 AGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGA 68354
|| || | || || || | |||||| || ||||| || | | || |||||||| ||
Sbjct 76553 AGCGTGCGACCGTCCTCAAGCTGCTTGCCCGCGAAGATCAAGCGCTGCTGGTCGGGAGGG 76494
Query 68355 ATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACT 68414
|| || |||||||| |||||||| ||||||||| ||||||||||| | || || ||
Sbjct 76493 ATTCCCTCCTTGTCCTGAATCTTGGCCTTGACGTTGTCGATGGTGTCCGAAGACTCGACC 76434
Query 68415 TCCAAGGTGATGGTTTTTCCCGTGAGGGTCTTGACGAATATCTGCAT 68461
|| | ||||||||| || || ||||||||||||||||| ||||||||
Sbjct 76433 TCGAGGGTGATGGTCTTGCCGGTGAGGGTCTTGACGAAGATCTGCAT 76387
Score = 132 bits (146), Expect = 9e-26
Identities = 144/191 (75%), Gaps = 0/191 (0%)
Strand=Plus/Minus
Query 68235 CCTCCGCGAAGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAG 68294
|||||||| || |||| || | ||| || || |||||||| ||||| |||||||| ||
Sbjct 76908 CCTCCGCGGAGACGCAGCACGAGGTGGAGGGTCGACTCTTTCTGGATATTATAATCCGAA 76849
Query 68295 AGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGA 68354
|| || | || || || | ||||||||| ||||| || | | ||||||||||| ||
Sbjct 76848 AGAGTACGACCGTCCTCGAGCTGCTTCCCCGCGAAGATCAAGCGCTGTTGGTCGGGAGGG 76789
Query 68355 ATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACT 68414
|| || ||||| || |||||||| ||||||||| ||||||||||| | || || ||
Sbjct 76788 ATTCCCTCCTTATCCTGAATCTTGGCCTTGACGTTGTCGATGGTGTCGGACGACTCGACC 76729
Query 68415 TCCAAGGTGAT 68425
|| | |||||
Sbjct 76728 TCGAGAGTGAT 76718
>seq196
Length=101194
Score = 159 bits (176), Expect = 6e-34
Identities = 286/418 (68%), Gaps = 0/418 (0%)
Strand=Plus/Minus
Query 30824 GTAATACATAAGCGTCTTGAGACCCTTCTTCCATGCATAGAACAGCATGGAAGACATTGA 30883
||| ||||| |||||||||||| ||||||||| | ||||| |||| || | |
Sbjct 14935 GTAGTACATGCCCGTCTTGAGACCTTTCTTCCATCCGTAGAAGTGCATCGACGTGAGCTG 14876
Query 30884 CTTCATAGAGGGCGCTGCAACGAAGAGGTTCATGCTCTGTGTCTGGTCAACAAACGGACC 30943
| ||| | |||| | | | || ||| | ||| | |||||| | |||| ||
Sbjct 14875 CGCCATGGTCGGCGACGAGAGGTGGACGTTGAGCGACTGCGACTGGTCGATGAACGCGCC 14816
Query 30944 GCGGTCTGCTGCAAGGTCAATGACGGTCTTCATAGACAGCTCCCATGCGGTCTTGTAGAT 31003
|||||| || || ||||| |||||| ||| || | |||||| |||||||||||||
Sbjct 14815 GCGGTCGGCGGCGAGGTCGATGACGACCTTTTGCGAGATCTCCCACACGGTCTTGTAGAT 14756
Query 31004 TGCCTTGAGCTCAGGGTGGATGCCAATGACACGTTGGATGGACCCCCCGTTGGCAATAAT 31063
||||||||| | ||||||| ||| ||||| || || || || || ||
Sbjct 14755 GCGCTTGAGCTCGTCGGGGATGCCGGGGACGTTCTGGATCGAGCCGTTGTGCGCGATGAT 14696
Query 31064 CTGGTTCTTCATGGCCTCGGACCACGTGCCACGAGCGATGAGGTCGCGCACGAGGTAGTT 31123
| ||||||||| || ||| |||| ||| || ||| ||||||||| | ||| ||
Sbjct 14695 CGTGTTCTTCATCGCGTCGTTCCACAGGCCGCGGTCGACGAGGTCGCGGAGGAGCCAGGG 14636
Query 31124 GTTGACCACAGGGAACTCTCCAGCAAGGGTCCGGCGGCTGTACAGATTAGAAGTGATCGG 31183
|||||| || ||||||| || || ||| |||||| |||| | || || ||| |||
Sbjct 14635 GTTGACGACCTGGAACTCGCCGGCGAGGACGCGGCGGGTGTAGATGTTGGACGTGTACGG 14576
Query 31184 CTCCATAGCCTCTACGGACCCGCAGATTTGCGCGGTGGATGCGGTGGGCATCAGCGCG 31241
||| | ||||| | | ||| ||| || ||| || ||||| |||||| |||||
Sbjct 14575 CTCGAACGCCTCGTTGAAGCCGAGGATCTGGCTGGTCGAGGCGGTAGGCATCGGCGCG 14518
>seq162
Length=517468
Score = 141 bits (156), Expect = 2e-28
Identities = 374/559 (67%), Gaps = 28/559 (5%)
Strand=Plus/Minus
Query 225449 AGGAAGCCAGAGTCGTGGGACACAATGATGGACGACACGTTCGTCAGGCCCTTGAGGTGC 225508
||||| ||||||||||| || || ||||| || | | || | || |||||
Sbjct 442722 AGGAAACCAGAGTCGTGCGAGACGATGATCGAGGTGCAGGTCTTGAGCGAGCAGAGGTAG 442663
Query 225509 GTGATGAGCCATGCCACGTTGCTGACGTCCATGTGGTTTGTAGGTTCGTCCAGAAGCAGG 225568
| |||||| || |||||| |||||||| ||||| || || ||||| || || |||
Sbjct 442662 TTCTCGAGCCAGGCGACGTTGAGGACGTCCAAATGGTTGGTCGGCTCGTCGAGGAGGAGG 442603
Query 225569 ATGTCAGCATCAATGAGGATGGCGCGCGTGAGAGACAGCTTCATTTTCCAGCCCCCGGAC 225628
||||| || || | |||||||||||| | ||||| || ||||| ||||| || |||||
Sbjct 442602 ATGTCGGCCTCGAAGAGGATGGCGCGGGCGAGAGCGAGTTTCATCTTCCATCCACCGGAG 442543
Query 225629 AGGGAGCCGATTGAAACAGAGTGCTTA-GCT--TCGTCAAAGCCG---TACTCCAGGA-G 225681
||||||||||| | | | | || | ||| | |||||| |||| |||| |
Sbjct 442542 AGGGAGCCGATGG---CGGCCTCCTGACGCTCGCGGGTGAAGCCGACCGACTCGAGGACG 442486
Query 225682 CGTCTGGA-TAAT--GCGCTCGGGAGAGCTGCGAGCGGCAACGTTGGGGTCGGACGAGAG 225738
| | | | | | ||||| ||| | |||| | | ||| || || ||||||
Sbjct 442485 CTGCGGCACTCGTCCTCGCTCTTGAG-GATGCGCTTG---TCCTTGAGGACGAACGAGAC 442430
Query 225739 GTAATCATATACGGTCATGTCCGAGACAGACG-CGTCAATGTCGTGGTCCACGTACACCG 225797
| ||| | | |||| | | || |||| | |||||| || ||||| | ||
Sbjct 442429 G--ATC-------GAGTTCTCCGTCTC-GTCGCCGTCGACGTCGTGCTCGACGTAGAACG 442380
Query 225798 TCCGGAGCTGAGAAGCATCGGGGAAGCCCTCCAGCTGGCCATTTGCAATCGCACGGAGCA 225857
| |||| || | |||||||||||| | ||| || || | |||||||| | |
Sbjct 442379 TGCGGACCTCGTCGGGGGAGGGGAAGCCCTCGACCTGTCCGTTGTCGATCGCACGCATAA 442320
Query 225858 GGGTACTCTTGCCCGCGCCGTTGGGACCGATGAGGCCGTAATGATTCCCGCGCTTGATGT 225917
|||| |||||||| |||||| | || ||| ||||| | | || |||||||
Sbjct 442319 GGGTCGACTTGCCCGAACCGTTGCGTCCACAGAGACCGTAGCGGTGTCCACGCTTGAGAC 442260
Query 225918 TGAGGCGCGTGGAGTTCAGGAGGATCTTGCCACCATAGGCAAGGGAGAACTCGCAATCGC 225977
|||| | | ||| ||||||||||| | || || || || |||||| ||| | ||
Sbjct 442259 GGAGGGTAGCCGTGTTGAGGAGGATCTTTGCGCCGTAAGCGAGCGAGAACGTGCAGTTGC 442200
Query 225978 ACAGGTCCTCACCCTCCTC 225996
|||||||||| ||||||||
Sbjct 442199 ACAGGTCCTCGCCCTCCTC 442181
Score = 93.3 bits (102), Expect = 8e-14
Identities = 123/170 (72%), Gaps = 3/170 (2%)
Strand=Plus/Minus
Query 224990 ATGTACTGGTTGGGGGTCATGTCCAGGTGGTTCTCAATATGGTGGAAAGCATGCTGGGCT 225049
||||||||| || ||| |||| ||||||| || || |||||||| || ||||||||
Sbjct 443282 ATGTACTGGAGCGGAGTCTTGTCGAGGTGGTGGTCGATGTGGTGGAAGGCGTGCTGGGCG 443223
Query 225050 ACGTACGCCATGCGCATGTTGGGATGCTTCCACA---CAGAGCCCCGAGTCGGTTGTGCC 225106
||||| | ||| || ||| || |||||||||| || |||| | || | | |
Sbjct 443222 ACGTAGCCGATGACCAAGTTCGGGTGCTTCCACACCTCACCGCCCTTGTTGGGCTCGGTC 443163
Query 225107 TCGCCGGTGAGGACCTTGATGAGCGTAGTCTTGCCCGCACCATTGGGGCC 225156
||| || ||||| ||||| ||| || | |||||| | ||| || |||||
Sbjct 443162 TCGGCGACGAGGAGCTTGACGAGGGTCGACTTGCCGGAACCGTTCGGGCC 443113
>seq175
Length=283523
Score = 100 bits (110), Expect = 5e-16
Identities = 149/208 (72%), Gaps = 4/208 (2%)
Strand=Plus/Minus
Query 9981 TTGGACTTGCCCTCGAGGGAAATGAGCTCCATGAAGTCAAAGGGGTTCTCGGCGCCAAAC 10040
|||| ||||||||| | || || | |||||| ||||| || ||||||||||| ||
Sbjct 258701 TTGGTCTTGCCCTCCATCGAGATCATCTCCATAAAGTCGAACGGGTTCTCGGCATTGTAC 258642
Query 10041 TGCTTGGGGTAACCGAGTGCTGTGAA--AATGCGGTCAGCCACGAACTCGATGTACTGGC 10098
|||| || || || || | || ||| ||||| || ||||||||||||||||| |
Sbjct 258641 AGCTTCTCGTTCCCAAGCGC-GACAAGCAAT-CGGTCCGCGACGAACTCGATGTACTGTC 258584
Query 10099 TCATCAGGTCCGAGTTCATGCCAATCATGCGGCAGGGGATGGCGTCGCAAATGAAGTCCT 10158
||| ||| || ||||||||| |||| || | ||| | |||||| | ||| ||||
Sbjct 258583 GCATGAGGGTCGCGTTCATGCCGATCAAGCCGACGGGCAAGGCGTCCGTCAGGAATTCCT 258524
Query 10159 TTTCGTTGGCGACCGCTTCCTCGACGAT 10186
||| | |||| ||||| ||| |||
Sbjct 258523 GCTCGATCTCGACGGCTTCGGCGATGAT 258496
>seq208
Length=337538
Score = 98.7 bits (108), Expect = 2e-15
Identities = 65/72 (90%), Gaps = 0/72 (0%)
Strand=Plus/Minus
Query 84456 GCCCGGTTAGCTCAGTCGGCAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAGC 84515
||||||||||||||||||| ||||| | || ||||||| || ||||||||||||||||||
Sbjct 71849 GCCCGGTTAGCTCAGTCGGTAGAGCACCAGACTCTTAATCTGGTGGTCGTGGGTTCGAGC 71790
Query 84516 CCCACATCGGGC 84527
||||||| ||||
Sbjct 71789 CCCACATTGGGC 71778
>seq192
Length=246786
Score = 98.7 bits (108), Expect = 2e-15
Identities = 65/72 (90%), Gaps = 0/72 (0%)
Strand=Plus/Minus
Query 84456 GCCCGGTTAGCTCAGTCGGCAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAGC 84515
||||||||||||||||||| ||||| | || ||||||| || ||||||||||||||||||
Sbjct 134552 GCCCGGTTAGCTCAGTCGGTAGAGCACCAGACTCTTAATCTGGTGGTCGTGGGTTCGAGC 134493
Query 84516 CCCACATCGGGC 84527
||||||| ||||
Sbjct 134492 CCCACATTGGGC 134481
>seq186
Length=34438
Score = 98.7 bits (108), Expect = 2e-15
Identities = 65/72 (90%), Gaps = 0/72 (0%)
Strand=Plus/Minus
Query 84456 GCCCGGTTAGCTCAGTCGGCAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAGC 84515
||||||||||||||||||| ||||| | || ||||||| || ||||||||||||||||||
Sbjct 624 GCCCGGTTAGCTCAGTCGGTAGAGCACCAGACTCTTAATCTGGTGGTCGTGGGTTCGAGC 565
Query 84516 CCCACATCGGGC 84527
||||||| ||||
Sbjct 564 CCCACATTGGGC 553
>seq163
Length=242995
Score = 98.7 bits (108), Expect = 2e-15
Identities = 65/72 (90%), Gaps = 0/72 (0%)
Strand=Plus/Minus
Query 84456 GCCCGGTTAGCTCAGTCGGCAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAGC 84515
||||||||||||||||||| ||||| | || ||||||| || ||||||||||||||||||
Sbjct 229725 GCCCGGTTAGCTCAGTCGGTAGAGCACCAGACTCTTAATCTGGTGGTCGTGGGTTCGAGC 229666
Query 84516 CCCACATCGGGC 84527
||||||| ||||
Sbjct 229665 CCCACATTGGGC 229654
Score = 98.7 bits (108), Expect = 2e-15
Identities = 65/72 (90%), Gaps = 0/72 (0%)
Strand=Plus/Plus
Query 84456 GCCCGGTTAGCTCAGTCGGCAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAGC 84515
||||||||||||||||||| ||||| | || ||||||| || ||||||||||||||||||
Sbjct 242695 GCCCGGTTAGCTCAGTCGGTAGAGCACCAGACTCTTAATCTGGTGGTCGTGGGTTCGAGC 242754
Query 84516 CCCACATCGGGC 84527
||||||| ||||
Sbjct 242755 CCCACATTGGGC 242766
>seq139
Length=271668
Score = 98.7 bits (108), Expect = 2e-15
Identities = 65/72 (90%), Gaps = 0/72 (0%)
Strand=Plus/Plus
Query 84456 GCCCGGTTAGCTCAGTCGGCAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAGC 84515
||||||||||||||||||| ||||| | || ||||||| || ||||||||||||||||||
Sbjct 92221 GCCCGGTTAGCTCAGTCGGTAGAGCACCAGACTCTTAATCTGGTGGTCGTGGGTTCGAGC 92280
Query 84516 CCCACATCGGGC 84527
||||||| ||||
Sbjct 92281 CCCACATTGGGC 92292
>seq52
Length=42957
Score = 98.7 bits (108), Expect = 2e-15
Identities = 65/72 (90%), Gaps = 0/72 (0%)
Strand=Plus/Minus
Query 84456 GCCCGGTTAGCTCAGTCGGCAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAGC 84515
||||||||||||||||||| ||||| | || ||||||| || ||||||||||||||||||
Sbjct 38458 GCCCGGTTAGCTCAGTCGGTAGAGCACCAGACTCTTAATCTGGTGGTCGTGGGTTCGAGC 38399
Query 84516 CCCACATCGGGC 84527
||||||| ||||
Sbjct 38398 CCCACATTGGGC 38387
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 921619888578960
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