Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhodotorula_20toruloides_20[genbank_20GCA_5F000988875.1_202015-05- 06] 218 sequences; 20,361,044 total letters Query= NC_010191.2 Length=186713 Score E Sequences producing significant alignments: (Bits) Value seq196 183 4e-41 seq138 96.9 4e-15 seq209 91.5 2e-13 >seq196 Length=101194 Score = 183 bits (202), Expect = 4e-41 Identities = 489/736 (66%), Gaps = 11/736 (1%) Strand=Plus/Minus Query 114590 GCATCCTTGTAAAGCATGTATGGCGTCCCCGTCTCCGTTTGGGACTTGAGAATAGCCTTC 114649 ||||||||||| |||||| | || | |||||||| |||| || ||| | || | | Sbjct 13802 GCATCCTTGTAGAGCATGAAGGGGTTGCCCGTCTCGACCTGGGCCTCGAGGACGGCGTAC 13743 Query 114650 CAGA-CATCGGCGGCTGGCACAGTGGCGTTGGCTCGCCCCTCCTCCTCGTACTTTGTGTA 114708 |||| | || | ||| || | ||| ||||| || ||||||| |||||||||| | Sbjct 13742 CAGAGCTTCTG-GGCGGGGATGGTGCGCTTGGCGCGACCCTCCTTCTCGTACTTTTCAAA 13684 Query 114709 GAGGGCTTCAAACTCTTCACCCACGGCCTCTGAGAGCCCTGGTGCCTTATCTGGGCAGAA 114768 ||| | | ||||| || || | |||| ||| || || |||| | |||||||| Sbjct 13683 GAGCTCCTTGAACTCGTCGCCGTAGACCTCGTGGAGACCGGGCGCCTCGGCCGGGCAGAA 13624 Query 114769 GAGAGACCATTGACCACCCTCCTCAACACGCTTCATGAAGAGGTCTGGGATCCAGAGAGC 114828 ||| | ||| | || || ||| ||||||| |||||||||||| |||||||| || || Sbjct 13623 GAGGGGCCAGTCGCCGTTCTGCTCGACACGCTCCATGAAGAGGTCGGGGATCCAAAGGGC 13564 Query 114829 TGAGAAGAGATCCCGACAGCGAGCTTCTTCATCCCCCTGATTGAGACGCAACTCCAAAAA 114888 |||| | || || ||| | || || | || || || || | || | || Sbjct 13563 AAAGAACAAGTCGCGCGCGCGGACCTCCTCCTTGCCGTGGTTCTTGCGGAGGTCGAGGAA 13504 Query 114889 GTCCATGATATCCGCGTGCCACGGTTCCAGGTACACCGCGATTGACCCCTTACG---ACG 114945 || | ||| || ||||||||||| || ||||| | |||| | ||| || Sbjct 13503 CTCGAAGATGTCGGCGTGCCACGGCTCGAGGTAGATGGCGAACGCGCCCGGGCGCTTGTT 13444 Query 114946 ACCAGCCTGGTTTACATACCTCGCTGTGGCATTAAATACGCGAAGCATTGGAATGATACC 115005 || |||||| || || | ||| ||| || | ||||| ||||| || ||||| || Sbjct 13443 GCCTCCCTGGTCGACGTAGCGCGCCGTGTTGTTGTACACGCGGAGCATGGGGATGATGCC 13384 Query 115006 ATCAGATTGGCCATTTGT-CCCCCGA-ATACGAGACTTATTGGCTCTGACATCATGGATG 115063 | || | ||| || || || ||| ||||| || | || | || | ||||| Sbjct 13383 GTTCGAGTAGCCGTTCGTGCCGGCGATGTACGA-AC-CGGTCGCGCGGATGTTGTGGATC 13326 Query 115064 TGCATACCAATACCCCCTGCCCACTTTGAGATTTGCGCGCACTCCGTGAGACTGCCGTAG 115123 | || || || |||||| ||| ||||| |||||||| | |||| || ||||| Sbjct 13325 GAGAGGCCGATGCCGCCTGCCGTCTTGGAGATGAGCGCGCACGTCTTGAGCGTGTCGTAG 13266 Query 115124 ATCCCGTCGATCGAGTCACCCTTATTTGCGATAAGGAAGCAGCTCGACATTTGTGGCCTT 115183 || || ||||||||||| |||| | | || |||||||| ||| | || || Sbjct 13265 ATGCCCTCGATCGAGTCGTCCTTCATCGTGACGAGGAAGCACGACGAGAGCTGCGGGTGC 13206 Query 115184 GGTGTACCAGCGTTGAAGAGGGTTGGTGTCGCGTGGATGAACATACC-TTGGGACATCTT 115242 || || || ||||||||||| || || | |||||| | || |||| | ||||| Sbjct 13205 GGCGTGCCGGCGTTGAAGAGCGTCGGCGACGCGTGCGT-AAAGTACCGCTCCGACATGAG 13147 Query 115243 ATCGTAGGTCTCCAAGACGGCGGGAATGTCTTCCCCGTGAATACCGATCGAGACCCGCAT 115302 | ||| ||||| | || | |||||| || ||||| || |||| || ||| ||||| Sbjct 13146 GTTGTACGTCTCGATCGCGCGGTCAATGTCGTCGCCGTGGATGCCGACCGCGACGCGCAT 13087 Query 115303 AAACATGTATTGGGGT 115318 | ||||| || ||| Sbjct 13086 GAGCATGTGCTGCGGT 13071 >seq138 Length=346568 Score = 96.9 bits (106), Expect = 4e-15 Identities = 164/235 (70%), Gaps = 2/235 (1%) Strand=Plus/Plus Query 10957 CTTACCGACGGCGTCAATTTCATCGATGAAAACGATACACGGTTGATT-TTCACGGGCAA 11015 ||| |||| |||||||| || |||||||| | ||| ||||| || ||| || | Sbjct 199270 CTTTCCGATCGCGTCAATCTCGTCGATGAAGATGATGCACGGCGCGTTCTTCTTGGCCTG 199329 Query 11016 CTTCAAAGATATCTCGGACTCTCTTGGCACCGACACCCACAAACATTTCCACAAAATTGG 11075 | ||| | || ||||| | ||||||||||||| || ||||| || || || | || Sbjct 199330 GGTGAAA-AGGTCGCGGACACGACTGGCACCGACACCGACGAACATCTCGACGAACTCGG 199388 Query 11076 CGGCGGAACATTGGATGAAGGGGACGTTGGATTCACCCGCGATGGCTCGGGCGAGGAGGG 11135 | |||| || |||||||||| || ||| || ||| | ||| ||||||||| | Sbjct 199389 AGCCGGAGACGGAGAGGAAGGGGACGCCGGCTTCGCCTGCGGTCGCTTTGGCGAGGAGCG 199448 Query 11136 TCTTCCCCGTCCCAGGTTTCCCTGCGAGAAGGGCACCACGTGGGATCCTGGCACC 11190 |||| || || || || || | ||| | ||| || || |||||| ||||||| Sbjct 199449 TCTTGCCGGTACCGGGAGGGCCGGAGAGGATGGCGCCGCGAGGGATCTTGGCACC 199503 >seq209 Length=45766 Score = 91.5 bits (100), Expect = 2e-13 Identities = 103/138 (75%), Gaps = 0/138 (0%) Strand=Plus/Plus Query 8796 GGGAACCTCAACGCCGAGAGGGACTGGGGACACGCCAAGGACTATGTTGAAGCCATGTGG 8855 || |||||| |||| || | |||||||||||||| ||||| || || | ||||||| Sbjct 20570 GGTAACCTCGACGCGAAGCGCGACTGGGGACACGCTCGTGACTACGTCGAGGGCATGTGG 20629 Query 8856 CTCGTACTTCAACAAGAAGAGGCGGACGAATATGTCGTCGCGACGGGGGAGACACACTCC 8915 | | | || || || || || | ||||| | |||| ||||||| || ||||| ||| || Sbjct 20630 CGCATGCTCCAGCAGGACCAGCCCGACGACTTTGTCCTCGCGACTGGCGAGACCCACCCC 20689 Query 8916 GTCAGGGAGTTCGTTGAG 8933 ||| | ||||| || ||| Sbjct 20690 GTCCGCGAGTTTGTCGAG 20707 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 597351972211440