Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhodotorula_20toruloides_20[genbank_20GCA_5F000988875.1_202015-05- 06] 218 sequences; 20,361,044 total letters Query= NC_010240.1 Length=169794 Score E Sequences producing significant alignments: (Bits) Value seq207 104 3e-17 seq215 82.4 8e-11 seq172 82.4 8e-11 >seq207 Length=219063 Score = 104 bits (114), Expect = 3e-17 Identities = 155/215 (72%), Gaps = 4/215 (2%) Strand=Plus/Minus Query 41996 CAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTC 42055 |||||||| ||| | ||| |||||| || || ||||| || || || || |||| Sbjct 76599 CAACACCAGATGGAGTGTAGACTCCTTCTGGATGTTGTAGTCGCTGAGCGTGCGACCGTC 76540 Query 42056 ATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCTGGCACGCTCTCCTTGTC 42115 || |||||||| || ||||| || | ||||||||||||| || | | ||||||||| Sbjct 76539 CTCAAGCTGCTTGCCCGCGAAGATCAAGCGCTGCTGGTCGGGAGGGATTCCCTCCTTGTC 76480 Query 42116 CATGATTTTTTG-TTTGAGCGTCG-CCACCGTGTCGCTCGATTCCACATCGACCGTGATG 42173 | ||| | || | |||| ||| | | | ||||| || || || |||| |||||| Sbjct 76479 C-TGAATCTTGGCCTTGA-CGTTGTCGATGGTGTCCGAAGACTCGACCTCGAGGGTGATG 76422 Query 42174 GTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCAT 42208 || ||||| || || ||||| || ||||| ||||| Sbjct 76421 GTCTTGCCGGTGAGGGTCTTGACGAAGATCTGCAT 76387 >seq215 Length=181685 Score = 82.4 bits (90), Expect = 8e-11 Identities = 114/157 (73%), Gaps = 2/157 (1%) Strand=Plus/Minus Query 42017 CTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAA 42076 |||||| || || ||||| || | || || || |||| || |||||||| || ||||| Sbjct 75625 CTCCTTCTGGATGTTGTAGTCCGAGAGGGTGCGGCCGTCCTCGAGCTGCTTGCCGGCGAA 75566 Query 42077 TATGAGTCGCTGCTGGTCGGCTGGCACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGT 42136 ||||| ||||||||||| | || | || |||||||||| ||| || |||| ||| Sbjct 75565 GATGAGGCGCTGCTGGTCAGGGGGGATGCCCTCCTTGTCCTGGATCTTGGCCTTGA-CGT 75507 Query 42137 CG-CCACCGTGTCGCTCGATTCCACATCGACCGTGAT 42172 | | | |||||| ||| || || |||| ||||| Sbjct 75506 TGTCGATCGTGTCCGACGACTCGACCTCGAGGGTGAT 75470 >seq172 Length=285481 Score = 82.4 bits (90), Expect = 8e-11 Identities = 83/108 (77%), Gaps = 0/108 (0%) Strand=Plus/Plus Query 42017 CTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAA 42076 |||||| || || ||||| || | ||||| || |||| || |||||||| || ||||| Sbjct 52578 CTCCTTCTGGATGTTGTAGTCCGAAAGAGTGCGGCCGTCCTCGAGCTGCTTGCCGGCGAA 52637 Query 42077 TATGAGTCGCTGCTGGTCGGCTGGCACGCTCTCCTTGTCCATGATTTT 42124 || || ||||||||||||| || | || |||||||||| ||| || Sbjct 52638 GATCAGGCGCTGCTGGTCGGGGGGGATGCCCTCCTTGTCCTGGATCTT 52685 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 543211319745120