Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhodotorula_20toruloides_20[genbank_20GCA_5F000988875.1_202015-05- 06] 218 sequences; 20,361,044 total letters Query= NC_011183.1 Length=154641 Score E Sequences producing significant alignments: (Bits) Value seq196 246 3e-60 >seq196 Length=101194 Score = 246 bits (272), Expect = 3e-60 Identities = 428/618 (69%), Gaps = 12/618 (2%) Strand=Plus/Plus Query 93724 TACTTTGCCTTCAAAACTCTGGAGAAGTCGTACCTCCTCAAGATGGATGGCAGGGTTTCC 93783 ||||| | |||||| || || ||| ||||||||| ||| | || |||| ||| || Sbjct 13006 TACTTCGGCTTCAAGACGCTCGAGCGGTCGTACCTGCTCCGCCTCGACGGCAAGGTGGCC 13065 Query 93784 GAGCGACCGCACCAGCTGCTGATGCGCGTCGCCATCGGGATTCACGGCCACGACATG--C 93841 ||||||||||| || |||| ||||||||||| |||| || |||||| ||||||| | Sbjct 13066 GAGCGACCGCAGCACATGCTCATGCGCGTCGCGGTCGGCATCCACGGCGACGACATTGAC 13125 Query 93842 CGAATGTTTTGCGGG-CTTTCAGAGACATGCGGGACAAGAGGTA---TACCATGGCCACC 93897 || | | || | | | || |||| ||| | |||| ||| || | Sbjct 13126 CGCGCGAT---CGAGACGTACAACCTCATGTCGGA---GCGGTACTTTACGCACGCGTCG 13179 Query 93898 CCGACCCTGTTCAACGCGGGGACCCCGGTGCCACAGATGTCTTCGTGTTTCCTGATGACG 93957 ||||| || |||||||| || || ||| || ||| | || ||||| ||||| | ||| Sbjct 13180 CCGACGCTCTTCAACGCCGGCACGCCGCACCCGCAGCTCTCGTCGTGCTTCCTCGTCACG 13239 Query 93958 AACAAGGCCGACTCCATCTCCGGAATTTTCGACAGCCTCAAGGACTGTGCGACCATCTCA 94017 | |||| |||||| ||| || || | ||||| |||||| || ||| |||||| Sbjct 13240 ATGAAGGACGACTCGATCGAGGGCATCTACGACACGCTCAAGACGTGCGCGCTCATCTCC 13299 Query 94018 AAATACGCGGGGGGAATCGGGATCAGTGTCCACGACGTACGTGCCAGGGGTTCCTACATC 94077 || || || || ||||| || ||||| || | || || | ||||| |||||| Sbjct 13300 AAGACGGCAGGCGGCATCGGCCTCTCGATCCACAACATCCGCGCGACCGGTTCGTACATC 13359 Query 94078 CGCGGTACCAATGGCACCTCCAACGGCCTCGTCCCTATGCTCCGGGTCTTCAACAACGCG 94137 ||| || || ||| ||| |||||| || |||| |||||||| || | ||||||| || Sbjct 13360 GCCGGCACGAACGGCTACTCGAACGGCATCATCCCCATGCTCCGCGTGTACAACAACACG 13419 Query 94138 GCGCGCTACGTGGACCAGGGTGGTGGGAGGAGGAAGGGTTCTTTCGCGGTCTATCTCGAG 94197 ||||||||||| |||||||| || | | | ||| | ||||| |||| |||||| Sbjct 13420 GCGCGCTACGTCGACCAGGGAGGCAACAAGCGCCCGGGCGCGTTCGCCATCTACCTCGAG 13479 Query 94198 CCCTGGCACGCGGACGTGCAGGCTTTCATCGACCTGCGAAAGAACCACGGCAACGATCTG 94257 || |||||||| ||| | | ||| ||||||| || |||||||||||||| || | Sbjct 13480 CCGTGGCACGCCGACATCTTCGAGTTCCTCGACCTCCGCAAGAACCACGGCAAGGAGGAG 13539 Query 94258 GAGAGGGCCAGAGACCTCTTCTACGCTCTCTGGGTGCCAGACCTTTTTATGAAACGCGTC 94317 | | || | ||| | |||| || || ||| | || ||||| || ||| | || ||| Sbjct 13540 GTCCGCGCGCGCGACTTGTTCTTTGCCCTTTGGATCCCCGACCTCTTCATGGAGCGTGTC 13599 Query 94318 GAGAAAAACTCCGCCTGG 94335 ||| | ||| || |||| Sbjct 13600 GAGCAGAACGGCGACTGG 13617 Score = 145 bits (160), Expect = 8e-30 Identities = 239/334 (72%), Gaps = 8/334 (2%) Strand=Plus/Plus Query 95089 AACGCGCTGCTTGTG-GCCCCCATGCCCACGGCCTCCACGGCGCAGATCCTTGGCAACAA 95147 ||| |||| | |||| || || ||||| || ||||| || |||||||| ||| ||| Sbjct 14504 AACTCGCT-CGTGTGCGCGCCGATGCCTACCGCCTCGACCAGCCAGATCCTCGGCTTCAA 14562 Query 95148 CGAGTCGTTCGAACCCTTCACCTCCAACGTGTACAACAGGCGGGTGCTCGCCGGGGAATT 95207 |||| ||||||| || | ||| |||||| | |||| | | || || |||||||| || || Sbjct 14563 CGAGGCGTTCGAGCCGTACACGTCCAACATCTACACCCGCCGCGTCCTCGCCGGCGAGTT 14622 Query 95208 CCCCGTCATCAACAAGCACCTCCTACGGGACCT-GACGTCTCTGGGTGTGTGGGGTGACA 95266 || ||| ||||| ||||| || ||||| | || | | || ||||| ||| Sbjct 14623 CCAGGTCGTCAACCCCTGGCTCCTCCGCGACCTCGTCGAC-CGCGGCCTGTGGAACGACG 14681 Query 95267 AGGTCAAGAACCAACTGCTACGCGC-CAACGGCTCCGTCCAGAACATCCCGCAAATACCG 95325 | | |||||| | | ||||| ||||||||| |||||||| |||| || || Sbjct 14682 CGATGAAGAACACGATCAT-CGCGCACAACGGCTCGATCCAGAACGTCCCCGGCATCCCC 14740 Query 95326 GAGGACATCAAGGCGC-TCTACAAGACCGTGTGGGAGATCCCGCAGCGCGTGATACTCGA 95384 || || ||||| ||| ||||||||||||||||||||||| |||| || | |||| Sbjct 14741 GACGAGCTCAAG-CGCATCTACAAGACCGTGTGGGAGATCTCGCAAAAGGTCGTCATCGA 14799 Query 95385 CCACGCGGCCGCCCGCGGGCCCTTCATCTGCCAG 95418 || ||| |||| |||||| | |||||| |||| Sbjct 14800 CCTCGCCGCCGACCGCGGCGCGTTCATCGACCAG 14833 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 494721851879280