Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Rhodotorula_20toruloides_20[genbank_20GCA_5F000988875.1_202015-05-
06] 218 sequences; 20,361,044 total letters
Query= NC_013668.3
Length=248526
Score E
Sequences producing significant alignments: (Bits) Value
seq196 122 1e-22
seq165 113 7e-20
>seq196
Length=101194
Score = 122 bits (134), Expect = 1e-22
Identities = 332/499 (67%), Gaps = 16/499 (3%)
Strand=Plus/Minus
Query 203839 CTTGTCCACCGTGAACTGAATGGCGTTCACGGCAGGCCTGCTTCTCAGATAGTACATGCC 203898
|| ||| || ||||||| |||||| ||||||| | | | | || |||||||||||
Sbjct 14983 CTGGTCGACGGTGAACTTGATGGCGCCGACGGCAGCGCGGGTGCGGAGGTAGTACATGCC 14924
Query 203899 GGTCTTTAGGCCCTTCTGCCACCCGTACATGTGCATGGAAGACAGTTTGCTCACGTTGGG 203958
||||| || || |||| ||| ||||| | |||||| || | || | || | | ||
Sbjct 14923 CGTCTTGAGACCTTTCTTCCATCCGTAGAAGTGCATCGACGTGAGCTGCGCCATGGTCGG 14864
Query 203959 GTCGGCCATGTGAATGTTCAGAGACTGGCTTTGGTCGATGAAAGGCGCC-CGATCTGCGG 204017
| | ||| | ||| || ||||| ||||||||| || ||||| || || ||||
Sbjct 14863 CGACGAGAGGTGGACGTTGAGCGACTGCGACTGGTCGATG-AACGCGCCGCGGTCGGCGG 14805
Query 204018 CCATATTGATAATGGTCTTCTGCGAAATCTCCCACACCGTCTTGAACACGTCTCTGGTG- 204076
| | | ||| | | ||| ||||| ||||||||||| |||||| | | | | || | |
Sbjct 14804 CGAGGTCGATGACGACCTTTTGCGAGATCTCCCACACGGTCTTGTAGATG-CGCTTGAGC 14746
Query 204077 -TGTTGAGGCACAT-CTTCCCACGTCCT-GATCGAGCCGTTGTCGGCCATCAGTCTCATC 204133
|| | || || | |||| || |||||||||||||| || || | | ||
Sbjct 14745 TCGTCGGGG---ATGCCGGGGACGTTCTGGATCGAGCCGTTGTGCGCGATGATCGTGTTC 14689
Query 204134 CTCGTCTCCTCCCCCCACATGCCCAACCTGATCAGCTCCCGCACCAGGTGGGGGTTGATG 204193
|| || | || ||||| ||| || || || || | || |||||||| |
Sbjct 14688 TTCATCGCGTCGTTCCACAGGCCGCGGTCGACGAGGTCGCGGAGGAGCCAGGGGTTGACG 14629
Query 204194 ATCTGAAAGTCTCCGGACAGCACCCCTCGGGTGAACAGGTTGTTGGTGAATGGTTCGAAC 204253
| ||| || || |||| || || | |||||| | | |||| ||| | || ||||||
Sbjct 14628 ACCTGGAACTCGCCGGCGAGGACGCGGCGGGTGTAGATGTTGGACGTGTACGGCTCGAAC 14569
Query 204254 GCCTCGTTGTTGCCGAAAATCTGAGCGGTGCTGGCCGTGGGCATGGGAGC---CAGGAGC 204310
||||||||| ||||| ||||| ||| ||| || ||||| || || || ||||
Sbjct 14568 GCCTCGTTGAAGCCGAGGATCTGGCTGGTCGAGGCGGTAGGCATCGGCGCGCACACGAGC 14509
Query 204311 AGGGAGTTGCGCACACCGT 204329
|||||||| | ||||
Sbjct 14508 ---GAGTTGCGGATGCCGT 14493
Score = 105 bits (116), Expect = 1e-17
Identities = 351/538 (65%), Gaps = 20/538 (4%)
Strand=Plus/Minus
Query 205165 CTCCATAAACAGGTCGCTGATCCACAGGCCGTAAAACAGATCACGGGCCCTAATTCCGTC 205224
|||||| || |||||| |||||| ||| | | |||| || || || | | | ||
Sbjct 13593 CTCCATGAAGAGGTCGGGGATCCAAAGGGCAAAGAACAAGTCGCGCGCGCGGACCTCCTC 13534
Query 205225 GTCTCCAAGGTTCTTTTTCAAGTCCAGCCAAGCCGCA-ATGTCGGCGTGCCACGGCTCTA 205283
| || ||||||| | ||| || || || | |||||||||||||||||||| |
Sbjct 13533 CTTGCCGTGGTTCTTGCGGAGGTCGAGG-AACTCGAAGATGTCGGCGTGCCACGGCTCGA 13475
Query 205284 ACCACACGGCCATTGCGCCTGGCCTCTTGTTCCCACCCTGGTCCACCATGCGAGTCATCG 205343
| | ||| | ||||| || | |||||| || |||||||| || ||| | | |
Sbjct 13474 GGTAGATGGCGAACGCGCCCGGGCGCTTGTTGCCTCCCTGGTCGACGTAGCGCGCCGTGT 13415
Query 205344 CGTTGAAAACTCGCAGCATCGGCACCAGACCGTTGGCGGTCCCGTTCGTGCTGTTGATGG 205403
|||| | || || ||||| || | | ||||| | | |||||||||| | ||||
Sbjct 13414 TGTTGTACACGCGGAGCATGGGGATGATGCCGTTCGAGTAGCCGTTCGTGCCGGCGATGT 13355
Query 205404 CCGAGCCTTCAGCCCTCACGTTGGAGATGGCCGCGCCAATCCCGCCAGAACACTTGGCGA 205463
||| || || | | |||| ||| | ||| || ||||| | ||||| ||
Sbjct 13354 ACGAACCGGTCGCGCGGATGTTGTGGATCGAGAGGCCGATGCCGCCTGCCGTCTTGGAGA 13295
Query 205464 TCTGGGCGCAC-TCTTGCAGAGTGCTGTAGATGCCTGCGATGGAATCGTCCGCCAGTGTC 205522
| | |||||| ||||| || ||| ||||||||| |||| || |||||| || ||
Sbjct 13294 TGAGCGCGCACGTCTTG-AGCGTGTCGTAGATGCCCTCGATCGAGTCGTCCTTCATCGTG 13236
Query 205523 ACCAGATAGCACGAAGCCAGCTTGGCAAAGTTG----GTGCCCGCGTGGAAGAGCGTGGG 205578
|| || ||||||| | |||| || | || ||||| |||| ||||||||| ||
Sbjct 13235 ACGAGGAAGCACGACGAGAGCT--GC--GGGTGCGGCGTGCCGGCGTTGAAGAGCGTCGG 13180
Query 205579 GCTGGCGTGGCTGAAGCGCTTCTCGCTCAAACA----CCTGTAGGTCTCCAGCACGCTCT 205634
||||| | ||| | ||||| ||| |||| ||||| | | ||| |
Sbjct 13179 CGACGCGTGCGTAAAG----TACCGCTCCGACATGAGGTTGTACGTCTCGATCGCGCGGT 13124
Query 205635 CCAGATCGAAGCCGTGAATACCTATGGCGATCCTCATGAAGAGGTGTTGAGGTCTCTC 205692
| | ||| |||||| || || | |||| | ||||| | ||| || |||| |||
Sbjct 13123 CAATGTCGTCGCCGTGGATGCCGACCGCGACGCGCATGAGCATGTGCTGCGGTCGCTC 13066
>seq165
Length=391853
Score = 113 bits (124), Expect = 7e-20
Identities = 215/313 (69%), Gaps = 13/313 (4%)
Strand=Plus/Plus
Query 159662 TTGGTCTTGCCCTCCATGGATATTGATTCCATGAACCCGAATGGGTTCTTCACGTGATAG 159721
||||||||||||||||| || || |||||||| |||| ||||||| | ||| |||
Sbjct 47716 TTGGTCTTGCCCTCCATCGAGATCATCTCCATGAAGTCGAACGGGTTCTCCTTGTGGTAG 47775
Query 159722 CGCTTCGGAAATCCGAGAGCCGCCAGCAACCTGTCTGCCACAAATTCGATGTAGCTACAC 159781
|||| || || || | ||||| | ||| || ||||| |||||||| |||
Sbjct 47776 ATCTTCTCGTTGCCAAGTGCGACAAGCAAGCGGTCGGCAACAAACTCGATGTACTGGCAC 47835
Query 159782 ATCTGCTCACAGTTGATCCCCAGCAGCCTAACGGGGAGCGCTTCCGACAGAAACTCCTTC 159841
|| | || | ||| || || | ||| | ||||| ||||| |||| || ||||| | |
Sbjct 47836 ATGAGGTCGCTGTTCATGCCGATGAGCTTGACGGGCAGCGCCTCCGTGAGGAACTCTTGC 47895
Query 159842 TCAATCTCGACCGCTTCGGTCACAATCTGCGAGACACGT-TCG----TACCCCGGCTTGC 159896
|| ||||||||||| ||| | || || ||| ||| ||| | |||| ||
Sbjct 47896 TCGATCTCGACCGCCTCGCGGATGATGCGCTCGAC-CGTGTCGGGGTGAGGGCGGC--GC 47952
Query 159897 CCAAAATGTGGTCCTTAAACAGGAGGCACGCAAAGTCGCAGTGCAGTCCCTCGTCCCGAG 159956
| | ||| | || |||||||| ||||||||| ||| || || ||||| || |
Sbjct 47953 TC-----GAGGTGCGAGAAGAGGAGGCAGGCAAAGTCGGTGTGGAGACCTTCGTCGCGCG 48007
Query 159957 AGATGAACTCGTT 159969
|||||| ||||||
Sbjct 48008 AGATGAGCTCGTT 48020
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 795153033202080
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |