Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhodotorula_20toruloides_20[genbank_20GCA_5F000988875.1_202015-05- 06] 218 sequences; 20,361,044 total letters Query= NC_013772.1 Length=176677 Score E Sequences producing significant alignments: (Bits) Value seq207 147 2e-30 seq172 123 3e-23 seq215 114 1e-20 seq49 102 9e-17 seq165 96.9 4e-15 seq188 86.0 7e-12 >seq207 Length=219063 Score = 147 bits (162), Expect = 2e-30 Identities = 172/230 (75%), Gaps = 2/230 (1%) Strand=Plus/Minus Query 46365 TGCCTCCTCTTAAACGCAACACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGG 46424 |||| || | || | |||||||||||| | |||| |||||| ||||| ||||||||| Sbjct 76615 TGCCACCGCGCAACCTCAACACCAGATGGAGTGTAGACTCCTTCTGGATGTTGTAGTCGC 76556 Query 46425 ATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCG 46484 || ||||| |||| || ||||||||||| ||||| ||||||||||||||||||| | Sbjct 76555 TGAGCGTGCGACCGTCCTCAAGCTGCTTGCCCGCGAAGATCAAGCGCTGCTGGTCGGGAG 76496 Query 46485 GCACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGTCG-CCACCGTGTCGCTCGATTCC 46543 | | | |||||||||| ||||| ||||| ||| | | | ||||| || || Sbjct 76495 GGATTCCCTCCTTGTCCTGAATCTTGGCCTTGA-CGTTGTCGATGGTGTCCGAAGACTCG 76437 Query 46544 ACATCCACCGTGATGGTTTTGCCCGTCAGCGTTTTAACAAAGATTTGCAT 46593 || || | |||||||| ||||| || || || || || ||||| ||||| Sbjct 76436 ACCTCGAGGGTGATGGTCTTGCCGGTGAGGGTCTTGACGAAGATCTGCAT 76387 Score = 109 bits (120), Expect = 6e-19 Identities = 108/140 (77%), Gaps = 0/140 (0%) Strand=Plus/Minus Query 46378 ACGCAACACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTC 46437 ||| | |||||| |||| ||| ||| || ||||| ||||| || || || ||||| | Sbjct 77329 ACGAAGCACCAGGTGCAGCGTAGACTCTTTCTGGATGTTGTAATCTGAAAGCGTGCGTCC 77270 Query 46438 GTCGTCGAGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTT 46497 ||| || |||||||| || ||||| ||||||||||||||||||| || | | |||||| Sbjct 77269 GTCCTCAAGCTGCTTCCCCGCGAAGATCAAGCGCTGCTGGTCGGGAGGGATACCCTCCTT 77210 Query 46498 GTCCATGATCTTCTTCTTGA 46517 |||| |||||| ||||| Sbjct 77209 GTCCTGGATCTTAGCCTTGA 77190 Score = 100 bits (110), Expect = 3e-16 Identities = 140/194 (72%), Gaps = 2/194 (1%) Strand=Plus/Minus Query 46365 TGCCTCCTCTTAAACGCAACACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGG 46424 ||||||| | | ||||| ||| || || | || ||| || |||||||| || || | Sbjct 76910 TGCCTCCGCGGAGACGCAGCACGAGGTGGAGGGTCGACTCTTTCTGGATATTATAATCCG 76851 Query 46425 ATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCG 46484 | ||||| || |||| ||||||||||| || ||||| ||||||||||| ||||||| | Sbjct 76850 AAAGAGTACGACCGTCCTCGAGCTGCTTCCCCGCGAAGATCAAGCGCTGTTGGTCGGGAG 76791 Query 46485 GCACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGTCG-CCACCGTGTCGCTCGATTCC 46543 | | | |||||| ||| ||||| ||||| ||| | | | |||||| ||| || Sbjct 76790 GGATTCCCTCCTTATCCTGAATCTTGGCCTTGA-CGTTGTCGATGGTGTCGGACGACTCG 76732 Query 46544 ACATCCACCGTGAT 46557 || || | ||||| Sbjct 76731 ACCTCGAGAGTGAT 76718 >seq172 Length=285481 Score = 123 bits (136), Expect = 3e-23 Identities = 92/108 (85%), Gaps = 0/108 (0%) Strand=Plus/Plus Query 46402 CTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAA 46461 |||||| ||||| |||||||| || |||||||| |||| |||||||||||||||||||| Sbjct 52578 CTCCTTCTGGATGTTGTAGTCCGAAAGAGTGCGGCCGTCCTCGAGCTGCTTGCCGGCGAA 52637 Query 46462 TATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATCTT 46509 |||| |||||||||||||| || | || |||||||||| |||||| Sbjct 52638 GATCAGGCGCTGCTGGTCGGGGGGGATGCCCTCCTTGTCCTGGATCTT 52685 >seq215 Length=181685 Score = 114 bits (126), Expect = 1e-20 Identities = 121/157 (77%), Gaps = 2/157 (1%) Strand=Plus/Minus Query 46402 CTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAA 46461 |||||| ||||| |||||||| || || ||||| |||| |||||||||||||||||||| Sbjct 75625 CTCCTTCTGGATGTTGTAGTCCGAGAGGGTGCGGCCGTCCTCGAGCTGCTTGCCGGCGAA 75566 Query 46462 TATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGT 46521 || | |||||||||||| | || | || |||||||||| |||||| ||||| ||| Sbjct 75565 GATGAGGCGCTGCTGGTCAGGGGGGATGCCCTCCTTGTCCTGGATCTTGGCCTTGA-CGT 75507 Query 46522 CG-CCACCGTGTCGCTCGATTCCACATCCACCGTGAT 46557 | | | |||||| ||| || || || | ||||| Sbjct 75506 TGTCGATCGTGTCCGACGACTCGACCTCGAGGGTGAT 75470 >seq49 Length=30792 Score = 102 bits (112), Expect = 9e-17 Identities = 95/118 (81%), Gaps = 2/118 (2%) Strand=Plus/Minus Query 46417 GTAGTCGGATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAAGCGCTGCTG 46476 ||||||| || ||||| |||| ||||||||||| || ||||| ||||||||||||| Sbjct 13205 GTAGTCGCGCAGCGTGCGGGCGTCCTCGAGCTGCTTCCCAGCGAAGATCAAGCGCTGCTC 13146 Query 46477 GTCGGCCGGCACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGTCG-CCACCGTGTC 46533 ||||| ||| | || |||||||||| |||||| |||||| ||||| |||||||| Sbjct 13145 GTCGGGCGGGATGCCCTCCTTGTCCTGGATCTTGGTCTTGA-CGTCGTAGACCGTGTC 13089 >seq165 Length=391853 Score = 96.9 bits (106), Expect = 4e-15 Identities = 113/153 (74%), Gaps = 0/153 (0%) Strand=Plus/Minus Query 46365 TGCCTCCTCTTAAACGCAACACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGG 46424 ||||||| | | ||||| ||| || || | || ||| || ||||| ||||| || | Sbjct 99938 TGCCTCCGCGGAGACGCAGCACGAGGTGGAGGGTCGACTCTTTCTGGATGTTGTAATCCG 99879 Query 46425 ATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCG 46484 | ||||| || |||| ||||||||||| || ||||| || | ||||||||||||| | Sbjct 99878 AAAGAGTACGACCGTCCTCGAGCTGCTTCCCCGCGAAGATAAGACGCTGCTGGTCGGGAG 99819 Query 46485 GCACGCTCTCCTTGTCCATGATCTTCTTCTTGA 46517 | | | |||||||||| |||||| ||||| Sbjct 99818 GGATTCCCTCCTTGTCCTGGATCTTGGCCTTGA 99786 Score = 87.8 bits (96), Expect = 2e-12 Identities = 110/151 (73%), Gaps = 0/151 (0%) Strand=Plus/Minus Query 46367 CCTCCTCTTAAACGCAACACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGGAT 46426 ||||| | | ||||| ||| || || | || ||| || ||||| ||||| || || Sbjct 99496 CCTCCGCGGAGACGCAGCACGAGGTGGAGGGTCGACTCTTTCTGGATGTTGTAATCCGAA 99437 Query 46427 AGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCGGC 46486 ||||| || | || ||||||||||| || ||||| || | ||||||||||||| || Sbjct 99436 AGAGTACGACCATCCTCGAGCTGCTTCCCCGCGAAGATAAGACGCTGCTGGTCGGGAGGG 99377 Query 46487 ACGCTCTCCTTGTCCATGATCTTCTTCTTGA 46517 | | |||||||||| |||||| ||||| Sbjct 99376 ATTCCCTCCTTGTCCTGGATCTTGGCCTTGA 99346 >seq188 Length=121655 Score = 86.0 bits (94), Expect = 7e-12 Identities = 95/124 (77%), Gaps = 2/124 (2%) Strand=Plus/Plus Query 46385 ACCAGATGCAATGTACTCTCCTT-TTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTC 46443 ||||| ||||| || | | ||| ||| | |||||||| || || ||||| |||| || Sbjct 2454 ACCAGGTGCAAGGT-CGCGCCTCGTTGAAGGTTGTAGTCCGAGAGTGTGCGACCGTCTTC 2512 Query 46444 GAGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCAT 46503 ||||||||||| |||| |||| |||||||||||||| ||| |||| ||||||| Sbjct 2513 GAGCTGCTTGCGCTCGAAGATCAGGCGCTGCTGGTCGGGCGGGACGCCAAGCTTGTCCTG 2572 Query 46504 GATC 46507 |||| Sbjct 2573 GATC 2576 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 565236859725360