Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhodotorula_20toruloides_20[genbank_20GCA_5F000988875.1_202015-05- 06] 218 sequences; 20,361,044 total letters Query= NC_013953.1 Length=156344 Score E Sequences producing significant alignments: (Bits) Value seq207 149 6e-31 seq175 123 2e-23 seq215 102 8e-17 seq165 102 8e-17 seq172 93.3 4e-14 >seq207 Length=219063 Score = 149 bits (164), Expect = 6e-31 Identities = 172/229 (75%), Gaps = 2/229 (1%) Strand=Plus/Plus Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303 ||||| || ||||| || || ||||| ||||| ||||||||| |||| |||||| | | Sbjct 76387 ATGCAGATCTTCGTCAAGACCCTCACCGGCAAGACCATCACCCTCGAGGTCGAGTCTTCG 76446 Query 38304 GACAGCGTGCA-AACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCA 38362 |||| | | | |||| | || | || || | ||||| |||||||| || ||||||| Sbjct 76447 GACACCATCGACAACG-TCAAGGCCAAGATTCAGGACAAGGAGGGAATCCCTCCCGACCA 76505 Query 38363 ACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 38422 ||||| | || | ||||||||| ||||| || |||| ||||| |||| ||||||||| Sbjct 76506 GCAGCGCTTGATCTTCGCGGGCAAGCAGCTTGAGGACGGTCGCACGCTCAGCGACTACAA 76565 Query 38423 CATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGTTTGAGAGGCGGC 38471 |||||| ||||| | || || ||| ||||| || | ||| | || ||| Sbjct 76566 CATCCAGAAGGAGTCTACACTCCATCTGGTGTTGAGGTTGCGCGGTGGC 76614 Score = 86.0 bits (94), Expect = 6e-12 Identities = 98/132 (74%), Gaps = 0/132 (0%) Strand=Plus/Plus Query 38328 AAAATCCTCGACAAAGAGGGAATTCCCGCCGACCAACAGCGGCTCATTTACGCGGGCAAA 38387 || |||| ||||| ||||| || || ||||||| ||||| | || | |||||| || Sbjct 77198 AAGATCCAGGACAAGGAGGGTATCCCTCCCGACCAGCAGCGCTTGATCTTCGCGGGGAAG 77257 Query 38388 CAGCTGGACGACGAGCGCACCCTCAACGACTACAACATCCAAAAGGAAGCGACGCTGCAT 38447 ||||| || |||| ||||| || || ||||||||||| || || | |||||||| Sbjct 77258 CAGCTTGAGGACGGACGCACGCTTTCAGATTACAACATCCAGAAAGAGTCTACGCTGCAC 77317 Query 38448 TTGGTGCTGCGT 38459 ||||||| ||| Sbjct 77318 CTGGTGCTTCGT 77329 >seq175 Length=283523 Score = 123 bits (136), Expect = 2e-23 Identities = 134/178 (75%), Gaps = 0/178 (0%) Strand=Plus/Minus Query 133218 GATTTGAAAGCCGTAAAAGCACCGCGCCTCGACCACCTGCACTTCTTGAGCGAAACGCTC 133277 ||| || || ||||| || || ||||||||| | | |||||| || | ||| | ||| Sbjct 257945 GATCTGGAAACCGTAGAAACAGCGCGCCTCGGCAATCTGCACCTCCGCCGAGAACCTCTC 257886 Query 133278 GACCAGATTTTCGTTGACGATGCCGTCGCTGGCGGCGAAAAAGGCCAGCACGTGCTTGAT 133337 |||| || ||||||||||||||||| |||||||| ||||| || |||||| ||| Sbjct 257885 CACCAAGTTCTCGTTGACGATGCCGTCCGAAGCGGCGAAGAAGGCAAGGACGTGCGAGAT 257826 Query 133338 GAAATGGCGCTCGTTGTCGTTCAAGCGCTCCCAGTCGCGCGTGTCCTTGGACAGGTCC 133395 ||| || ||||||||||| ||| || |||||||| | | |||||| || | |||| Sbjct 257825 GAAGTGTCGCTCGTTGTCCGTCAGTCGGTCCCAGTCCCACAGGTCCTTCGAGATGTCC 257768 Score = 111 bits (122), Expect = 2e-19 Identities = 118/156 (76%), Gaps = 0/156 (0%) Strand=Plus/Minus Query 132945 GAAAGTCAAGCCGGGCATGAGGCCGCGTTTTTTGAGCCAAAATATGGCGGCGAAACTGCC 133004 ||| |||||||||||||| | ||| || ||||| ||||| || || | |||||| ||| Sbjct 258335 GAACGTCAAGCCGGGCATCAAGCCACGCTTTTTAAGCCAGAAGATCGAGGCGAACGAGCC 258276 Query 133005 CGAAAAGAAGACGCCCTCGACGGCCGCGAAAGCCACCAGGCGCTCGCCGAACGTGGCTTC 133064 || ||||||| ||||||||| || |||||||| ||||| || || | ||| ||| Sbjct 258275 GGAGAAGAAGATGCCCTCGACTGCGGCGAAAGCGACCAGTCGTTCCGCAAACACGGCGCG 258216 Query 133065 TTTGCTGGCGATCCAGCGCAGCGCCCATTCGGCCTT 133100 | | |||||| ||||||||||| |||||||| Sbjct 258215 AGGGTCCGAGATCCATCGCAGCGCCCACTCGGCCTT 258180 >seq215 Length=181685 Score = 102 bits (112), Expect = 8e-17 Identities = 125/168 (74%), Gaps = 2/168 (1%) Strand=Plus/Plus Query 38280 ATCACCGTCGACGTCGAGGCCACCGACAGCGTGCA-AACGCTTAAAGAAAAAATCCTCGA 38338 |||||| |||| |||||| | | |||| | | |||| | || | || |||| || Sbjct 75470 ATCACCCTCGAGGTCGAGTCGTCGGACACGATCGACAACG-TCAAGGCCAAGATCCAGGA 75528 Query 38339 CAAAGAGGGAATTCCCGCCGACCAACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGA 38398 ||| ||||| || ||| | ||||| ||||| ||||| | ||| ||||| ||||| || || Sbjct 75529 CAAGGAGGGCATCCCCCCTGACCAGCAGCGCCTCATCTTCGCCGGCAAGCAGCTCGAGGA 75588 Query 38399 CGAGCGCACCCTCAACGACTACAACATCCAAAAGGAAGCGACGCTGCA 38446 || ||||||||| |||||||||||||| ||||| |||| || || Sbjct 75589 CGGCCGCACCCTCTCGGACTACAACATCCAGAAGGAGTCGACCCTTCA 75636 >seq165 Length=391853 Score = 102 bits (112), Expect = 8e-17 Identities = 114/151 (75%), Gaps = 1/151 (1%) Strand=Plus/Plus Query 132955 CCGGGCATGAGGCCGCGTTTTTTGAGCCAAAATATGGCGGCGAAACTGCCCGAAAAGAAG 133014 |||||||| | |||||| || |||||||| || |||| ||||| ||| || |||||| Sbjct 48131 CCGGGCATCAAGCCGCGCTTCTTGAGCCAGAAGATGGACGCGAACGAGCCGGAGAAGAAG 48190 Query 133015 ACGCCCTCGACGGCCGCGAAAGCCACCAGGCGCTCGCCGAACGTGGCTTCTTTGCTGGCG 133074 | |||||||||||| ||||| || || || ||||||||||| || | | | | Sbjct 48191 ATGCCCTCGACGGCGGCGAACGCGACGAGACGCTCGCCGAAGACGGAGCGGTCGTCCGAG 48250 Query 133075 ATCCAGCGCAGCGCCCATTCGGCCTT-TTCT 133104 |||||| |||||||| |||||||| |||| Sbjct 48251 ATCCAGGTGAGCGCCCACTCGGCCTTCTTCT 48281 Score = 86.0 bits (94), Expect = 6e-12 Identities = 98/132 (74%), Gaps = 0/132 (0%) Strand=Plus/Plus Query 38328 AAAATCCTCGACAAAGAGGGAATTCCCGCCGACCAACAGCGGCTCATTTACGCGGGCAAA 38387 || |||| ||||| |||||||| || ||||||| ||||| || || | |||||| || Sbjct 99794 AAGATCCAGGACAAGGAGGGAATCCCTCCCGACCAGCAGCGTCTTATCTTCGCGGGGAAG 99853 Query 38388 CAGCTGGACGACGAGCGCACCCTCAACGACTACAACATCCAAAAGGAAGCGACGCTGCAT 38447 ||||| || |||| || || || || ||||||||||| || || |||| || || Sbjct 99854 CAGCTCGAGGACGGTCGTACTCTTTCGGATTACAACATCCAGAAAGAGTCGACCCTCCAC 99913 Query 38448 TTGGTGCTGCGT 38459 | ||||||||| Sbjct 99914 CTCGTGCTGCGT 99925 >seq172 Length=285481 Score = 93.3 bits (102), Expect = 4e-14 Identities = 107/144 (74%), Gaps = 0/144 (0%) Strand=Plus/Minus Query 38328 AAAATCCTCGACAAAGAGGGAATTCCCGCCGACCAACAGCGGCTCATTTACGCGGGCAAA 38387 || |||| ||||| ||||| || ||| ||||||| ||||| || || | ||| ||||| Sbjct 52685 AAGATCCAGGACAAGGAGGGCATCCCCCCCGACCAGCAGCGCCTGATCTTCGCCGGCAAG 52626 Query 38388 CAGCTGGACGACGAGCGCACCCTCAACGACTACAACATCCAAAAGGAAGCGACGCTGCAT 38447 ||||| || |||| ||||| || |||||||||||||| ||||| |||| || || Sbjct 52625 CAGCTCGAGGACGGCCGCACTCTTTCGGACTACAACATCCAGAAGGAGTCGACCCTCCAC 52566 Query 38448 TTGGTGCTGCGTTTGAGAGGCGGC 38471 | || || ||| | | |||||| Sbjct 52565 CTCGTCCTCCGTCTCCGCGGCGGC 52542 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 500171437029120