Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Rhodotorula_20toruloides_20[genbank_20GCA_5F000988875.1_202015-05-
06] 218 sequences; 20,361,044 total letters
Query= NC_013953.1
Length=156344
Score E
Sequences producing significant alignments: (Bits) Value
seq207 149 6e-31
seq175 123 2e-23
seq215 102 8e-17
seq165 102 8e-17
seq172 93.3 4e-14
>seq207
Length=219063
Score = 149 bits (164), Expect = 6e-31
Identities = 172/229 (75%), Gaps = 2/229 (1%)
Strand=Plus/Plus
Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303
||||| || ||||| || || ||||| ||||| ||||||||| |||| |||||| | |
Sbjct 76387 ATGCAGATCTTCGTCAAGACCCTCACCGGCAAGACCATCACCCTCGAGGTCGAGTCTTCG 76446
Query 38304 GACAGCGTGCA-AACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCA 38362
|||| | | | |||| | || | || || | ||||| |||||||| || |||||||
Sbjct 76447 GACACCATCGACAACG-TCAAGGCCAAGATTCAGGACAAGGAGGGAATCCCTCCCGACCA 76505
Query 38363 ACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 38422
||||| | || | ||||||||| ||||| || |||| ||||| |||| |||||||||
Sbjct 76506 GCAGCGCTTGATCTTCGCGGGCAAGCAGCTTGAGGACGGTCGCACGCTCAGCGACTACAA 76565
Query 38423 CATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGTTTGAGAGGCGGC 38471
|||||| ||||| | || || ||| ||||| || | ||| | || |||
Sbjct 76566 CATCCAGAAGGAGTCTACACTCCATCTGGTGTTGAGGTTGCGCGGTGGC 76614
Score = 86.0 bits (94), Expect = 6e-12
Identities = 98/132 (74%), Gaps = 0/132 (0%)
Strand=Plus/Plus
Query 38328 AAAATCCTCGACAAAGAGGGAATTCCCGCCGACCAACAGCGGCTCATTTACGCGGGCAAA 38387
|| |||| ||||| ||||| || || ||||||| ||||| | || | |||||| ||
Sbjct 77198 AAGATCCAGGACAAGGAGGGTATCCCTCCCGACCAGCAGCGCTTGATCTTCGCGGGGAAG 77257
Query 38388 CAGCTGGACGACGAGCGCACCCTCAACGACTACAACATCCAAAAGGAAGCGACGCTGCAT 38447
||||| || |||| ||||| || || ||||||||||| || || | ||||||||
Sbjct 77258 CAGCTTGAGGACGGACGCACGCTTTCAGATTACAACATCCAGAAAGAGTCTACGCTGCAC 77317
Query 38448 TTGGTGCTGCGT 38459
||||||| |||
Sbjct 77318 CTGGTGCTTCGT 77329
>seq175
Length=283523
Score = 123 bits (136), Expect = 2e-23
Identities = 134/178 (75%), Gaps = 0/178 (0%)
Strand=Plus/Minus
Query 133218 GATTTGAAAGCCGTAAAAGCACCGCGCCTCGACCACCTGCACTTCTTGAGCGAAACGCTC 133277
||| || || ||||| || || ||||||||| | | |||||| || | ||| | |||
Sbjct 257945 GATCTGGAAACCGTAGAAACAGCGCGCCTCGGCAATCTGCACCTCCGCCGAGAACCTCTC 257886
Query 133278 GACCAGATTTTCGTTGACGATGCCGTCGCTGGCGGCGAAAAAGGCCAGCACGTGCTTGAT 133337
|||| || ||||||||||||||||| |||||||| ||||| || |||||| |||
Sbjct 257885 CACCAAGTTCTCGTTGACGATGCCGTCCGAAGCGGCGAAGAAGGCAAGGACGTGCGAGAT 257826
Query 133338 GAAATGGCGCTCGTTGTCGTTCAAGCGCTCCCAGTCGCGCGTGTCCTTGGACAGGTCC 133395
||| || ||||||||||| ||| || |||||||| | | |||||| || | ||||
Sbjct 257825 GAAGTGTCGCTCGTTGTCCGTCAGTCGGTCCCAGTCCCACAGGTCCTTCGAGATGTCC 257768
Score = 111 bits (122), Expect = 2e-19
Identities = 118/156 (76%), Gaps = 0/156 (0%)
Strand=Plus/Minus
Query 132945 GAAAGTCAAGCCGGGCATGAGGCCGCGTTTTTTGAGCCAAAATATGGCGGCGAAACTGCC 133004
||| |||||||||||||| | ||| || ||||| ||||| || || | |||||| |||
Sbjct 258335 GAACGTCAAGCCGGGCATCAAGCCACGCTTTTTAAGCCAGAAGATCGAGGCGAACGAGCC 258276
Query 133005 CGAAAAGAAGACGCCCTCGACGGCCGCGAAAGCCACCAGGCGCTCGCCGAACGTGGCTTC 133064
|| ||||||| ||||||||| || |||||||| ||||| || || | ||| |||
Sbjct 258275 GGAGAAGAAGATGCCCTCGACTGCGGCGAAAGCGACCAGTCGTTCCGCAAACACGGCGCG 258216
Query 133065 TTTGCTGGCGATCCAGCGCAGCGCCCATTCGGCCTT 133100
| | |||||| ||||||||||| ||||||||
Sbjct 258215 AGGGTCCGAGATCCATCGCAGCGCCCACTCGGCCTT 258180
>seq215
Length=181685
Score = 102 bits (112), Expect = 8e-17
Identities = 125/168 (74%), Gaps = 2/168 (1%)
Strand=Plus/Plus
Query 38280 ATCACCGTCGACGTCGAGGCCACCGACAGCGTGCA-AACGCTTAAAGAAAAAATCCTCGA 38338
|||||| |||| |||||| | | |||| | | |||| | || | || |||| ||
Sbjct 75470 ATCACCCTCGAGGTCGAGTCGTCGGACACGATCGACAACG-TCAAGGCCAAGATCCAGGA 75528
Query 38339 CAAAGAGGGAATTCCCGCCGACCAACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGA 38398
||| ||||| || ||| | ||||| ||||| ||||| | ||| ||||| ||||| || ||
Sbjct 75529 CAAGGAGGGCATCCCCCCTGACCAGCAGCGCCTCATCTTCGCCGGCAAGCAGCTCGAGGA 75588
Query 38399 CGAGCGCACCCTCAACGACTACAACATCCAAAAGGAAGCGACGCTGCA 38446
|| ||||||||| |||||||||||||| ||||| |||| || ||
Sbjct 75589 CGGCCGCACCCTCTCGGACTACAACATCCAGAAGGAGTCGACCCTTCA 75636
>seq165
Length=391853
Score = 102 bits (112), Expect = 8e-17
Identities = 114/151 (75%), Gaps = 1/151 (1%)
Strand=Plus/Plus
Query 132955 CCGGGCATGAGGCCGCGTTTTTTGAGCCAAAATATGGCGGCGAAACTGCCCGAAAAGAAG 133014
|||||||| | |||||| || |||||||| || |||| ||||| ||| || ||||||
Sbjct 48131 CCGGGCATCAAGCCGCGCTTCTTGAGCCAGAAGATGGACGCGAACGAGCCGGAGAAGAAG 48190
Query 133015 ACGCCCTCGACGGCCGCGAAAGCCACCAGGCGCTCGCCGAACGTGGCTTCTTTGCTGGCG 133074
| |||||||||||| ||||| || || || ||||||||||| || | | | |
Sbjct 48191 ATGCCCTCGACGGCGGCGAACGCGACGAGACGCTCGCCGAAGACGGAGCGGTCGTCCGAG 48250
Query 133075 ATCCAGCGCAGCGCCCATTCGGCCTT-TTCT 133104
|||||| |||||||| |||||||| ||||
Sbjct 48251 ATCCAGGTGAGCGCCCACTCGGCCTTCTTCT 48281
Score = 86.0 bits (94), Expect = 6e-12
Identities = 98/132 (74%), Gaps = 0/132 (0%)
Strand=Plus/Plus
Query 38328 AAAATCCTCGACAAAGAGGGAATTCCCGCCGACCAACAGCGGCTCATTTACGCGGGCAAA 38387
|| |||| ||||| |||||||| || ||||||| ||||| || || | |||||| ||
Sbjct 99794 AAGATCCAGGACAAGGAGGGAATCCCTCCCGACCAGCAGCGTCTTATCTTCGCGGGGAAG 99853
Query 38388 CAGCTGGACGACGAGCGCACCCTCAACGACTACAACATCCAAAAGGAAGCGACGCTGCAT 38447
||||| || |||| || || || || ||||||||||| || || |||| || ||
Sbjct 99854 CAGCTCGAGGACGGTCGTACTCTTTCGGATTACAACATCCAGAAAGAGTCGACCCTCCAC 99913
Query 38448 TTGGTGCTGCGT 38459
| |||||||||
Sbjct 99914 CTCGTGCTGCGT 99925
>seq172
Length=285481
Score = 93.3 bits (102), Expect = 4e-14
Identities = 107/144 (74%), Gaps = 0/144 (0%)
Strand=Plus/Minus
Query 38328 AAAATCCTCGACAAAGAGGGAATTCCCGCCGACCAACAGCGGCTCATTTACGCGGGCAAA 38387
|| |||| ||||| ||||| || ||| ||||||| ||||| || || | ||| |||||
Sbjct 52685 AAGATCCAGGACAAGGAGGGCATCCCCCCCGACCAGCAGCGCCTGATCTTCGCCGGCAAG 52626
Query 38388 CAGCTGGACGACGAGCGCACCCTCAACGACTACAACATCCAAAAGGAAGCGACGCTGCAT 38447
||||| || |||| ||||| || |||||||||||||| ||||| |||| || ||
Sbjct 52625 CAGCTCGAGGACGGCCGCACTCTTTCGGACTACAACATCCAGAAGGAGTCGACCCTCCAC 52566
Query 38448 TTGGTGCTGCGTTTGAGAGGCGGC 38471
| || || ||| | | ||||||
Sbjct 52565 CTCGTCCTCCGTCTCCGCGGCGGC 52542
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 500171437029120
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |