Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhodotorula_20toruloides_20[genbank_20GCA_5F000988875.1_202015-05- 06] 218 sequences; 20,361,044 total letters Query= NC_014765.1 Length=198519 Score E Sequences producing significant alignments: (Bits) Value seq198 277 2e-69 seq167 136 5e-27 seq187 132 6e-26 >seq198 Length=145707 Score = 277 bits (306), Expect = 2e-69 Identities = 643/965 (67%), Gaps = 7/965 (1%) Strand=Plus/Minus Query 7010 TCACCCGTTAAGATGGCGGCTTGGACCGTCGCCCCGTATGCGACCGCCTCATCGGGGTTA 7069 || || || | |||||| || ||||| | || ||||| ||||| ||||| || ||||| Sbjct 111182 TCGCCGGTGAGGATGGCAGCCTGGACGGCGGCGCCGTACGCGACGGCCTCGTCCGGGTTG 111123 Query 7070 ATCGTTTTATTCAGTTCTTTACCGTTAAAATAATCCGATAACATTTGTTGAATTTTCGGG 7129 |||| || || | || || ||| || | || || | | | || | |||| Sbjct 111122 ATCGACTTGTTGGGCTCCTTGCCGCCGAAGAAGTCGGAGACGAGCTTCTGGACACGCGGG 111063 Query 7130 ATTCGTGTCGATCCACCGACCAAAACGATTTCATTCACTTTCGATTTATCGATCTTTGAG 7189 || || ||||| || ||||| | || || || | || | || || ||||| ||| Sbjct 111062 ATACGGGTCGAGCCGCCGACGAGGACAATCTCGTGGACCGACTGCTTGTCAATCTTCGAG 111003 Query 7190 TCTCGAAGTGTTTTTTCGACAGGTTCCATACATTTA-CGGAACAAGTCCATACACAGTTC 7248 || || || || ||||| || ||||| | | | ||||| | |||| || || || Sbjct 111002 TCGCGGAGGACCTTCTCGACGGGCTCCAT-CGTCGAGCGGAAGAGGTCCTGGCAGAGCTC 110944 Query 7249 CTCAAAACGTGCACGGGTAATGGATGTATAGAAATCAACGCCGTCGTATAACGAATCAAT 7308 ||| || || || ||||| || || || ||||| || | ||| ||| | | ||| || || Sbjct 110943 CTCGAAGCGGGCGCGGGTGATCGAGGTGTAGAAGTCGATGCCCTCGAAGAGCGAGTCGAT 110884 Query 7309 TTCAATGGTTGTTTGTGCCGTCGAAGATAACGTTCGCTTTGCGCGCTCACACGCCGTTCG 7368 || ||||| || || || | ||| || | || ||||| |||||||| || || || || Sbjct 110883 CTCGATGGTGGTCTGGGCGGCCGACGAGAGGGTGCGCTTGGCGCGCTCGCAAGCGGTGCG 110824 Query 7369 TAAACGACGAAGGGCACGCGGGTTACCGGAAATATCTTTCTTATGTTTACGTTTAAACTC 7428 | ||| || ||||| || | ||| || | || ||||| | || || || ||||| Sbjct 110823 GAGACGGCGGAGGGCGCGGGCGTTCGACGAGAGGTCCTTCTTGTTCTTGCGCTTGAACTC 110764 Query 7429 TTCAGAGAAGTGTCGAAGGAGTCTCGAATCGAAATCTTCACCACCCAAGTGTGTATCCCC 7488 | ||||| | ||| | || || || ||||| || | ||| || || || Sbjct 110763 GGCGACAAAGTGGTTGACGAGGCGGTTGTCAAAGTCCTCACCGCCGAGGTGGGTGTCTCC 110704 Query 7489 CGCGGTCGCTTTGACTTCAAAGATACCTCCTTCAATGTTTAACAACGAAACATCAAACGT 7548 || ||||| ||||| || ||||| || | || || | | | ||| || || ||||| Sbjct 110703 GGCAGTCGCCTTGACCTCGAAGATGCCCTCCTCGATCGTGAGGAGCGAGACGTCGAACGT 110644 Query 7549 ACCACCACCCAGGTCAAAAATGAGTACGTTCGTATCGTCGTCTTTGTTCTTATCGAGACC 7608 || || |||| |||||| ||||| |||||| | ||| | || ||||| ||||| || Sbjct 110643 GCCGCCGCCCAAGTCAAAGATGAGGACGTTCTTCTCGCCCTCGGACTTCTTGTCGAGGCC 110584 Query 7609 GTACGCGATAGCCGCCGCCGTTGGTTCATTAATAATACGAAGACAGTTCAGGCCAGCAAT 7668 ||||||||| || || || || || || || || || || || ||| ||||| | || Sbjct 110583 GTACGCGATGGCGGCGGCGGTGGGCTCGTTGATGATGCGGAGGACGTTGAGGCCCGAGAT 110524 Query 7669 AGTTGCCGCATCTTTCGTCGCTTGTCGTTGCGAATCGTTAAAGTAGGCCGGGACCGTTAC 7728 | || || || || || || || ||||| ||||| |||||||| ||||| || || Sbjct 110523 CAAGCCGGCGTCCTTGGTGGCCTGACGCTGCGAGTCGTTGAAGTAGGCGGGGACGGTGAC 110464 Query 7729 GACCGCGTCCGTGACTTTCTTACCGAGATACGATTCCGCGATATCTTTCATTTTGGTAAG 7788 ||| |||| | ||| | ||||| || | || || | || ||||| ||| || Sbjct 110463 GACGGCGTTGGCGACCGTGCCGCCGAGGTAGGCCTCGGCCGTCTCCTTCATCTTGAGGAG 110404 Query 7789 AACCATCGATGAAATCTCTTCAGCCGCAAACTGTTTCGTTTCACCGTTAAAATCAACTTC 7848 |||||||| || ||||| || | || |||| ||| || || || | || || Sbjct 110403 GACCATCGACGAGATCTCCTCGGGCGTGAACTCCTTCTGCTCGCCCTTGTACTCGACCGA 110344 Query 7849 AATCATGGGTTTATCCGCAGCAC-CGGGGATAACCTTATACGACCAATCTTTCATATCGT 7907 || ||||| || ||| || | ||| ||||| ||| ||| | ||||| ||| Sbjct 110343 GATGATGGGCTTGCCCG----ACTTGTCGATGACCTTGAACGGCCAGTGCTTCATGTCGG 110288 Query 7908 CTTGGACCTGTTGGTCCGAAAACTTTCTTCCGATAAGACGCTTTGCATCAAAAACTGTGT 7967 ||||||| ||| | |||||| | |||||| || ||||| || || || || ||| Sbjct 110287 ACTGGACCTCGGCGTCGGCAAACTTGCGTCCGATGAGGCGCTTGGCGTCGAAGACGGTGC 110228 Query 7968 TTTTG 7972 | ||| Sbjct 110227 TGTTG 110223 >seq167 Length=562576 Score = 136 bits (150), Expect = 5e-27 Identities = 523/812 (64%), Gaps = 27/812 (3%) Strand=Plus/Plus Query 7013 CCCGTTAAGATGGCGGCTTGGACCGTCGCCCCGTATGCGACCGCCTCATCGGGGTTAATC 7072 || || | || |||||| ||||| | || ||||| ||||| ||||| |||||||| ||| Sbjct 518091 CCGGTGAGGACGGCGGCCTGGACGGCGGCACCGTACGCGACGGCCTCGTCGGGGTTGATC 518150 Query 7073 GTTTTATTCAGTTCTTTACCGTTAAAATAATCCGATAACATTTGTTGAATTTTCGGGATT 7132 | || || || | ||| || | || || | | || || || ||||| Sbjct 518151 GACTTGTTGAGCTGGCGGCCGCCGAAGAACTCGGAGACGAGCGACTGGATCTTGGGGATA 518210 Query 7133 CGTGTCGATCCACCGACCAAAACGATTTCATTCACTTTCGATTTATCGATCTTTGAGTC- 7191 || ||||| |||||||| | || || || | || || || || |||||||| | ||| Sbjct 518211 CGGGTCGAGCCACCGACGAGGACAATGTCGTCAACCTTGGACTTGTCGATCTTGGCGTCC 518270 Query 7192 -TC--GAAGTGTTTTTTCGACAGGTTCCATACATTTACGGAACAAGTCCATACACAGTTC 7248 || || | | | |||| || || | |||||| ||| | | || Sbjct 518271 TTCAAGACGCGCT----CGACGGGGTCGAGGGTCGAGCGGAAC--GTCGCGGCGTTGATC 518324 Query 7249 --CTCAAAACGTGCACGGGTAATGGATGTATAGAAATCAACGCCGTCGTATAACGAATCA 7306 |||||| || ||||| | || || | |||| || ||| | | | | ||| || Sbjct 518325 TCCTCAAAGCGGGCACGCGAGATCGAGGCCGAGAAGTCCTGGCCCTGGAAGAGCGAGTCG 518384 Query 7307 ATTTCAATGGTTGTTTG--TGCCGTCGAAGATAACGTTCGCTTTGCGCGCTCACACGCCG 7364 | || | ||| || || || || || || | || ||||| || ||||| ||||||| Sbjct 518385 ACCTCGACGGTGGTCTGGGTGACG--GACGAGAGGGTGCGCTTGGCACGCTCGCACGCCG 518442 Query 7365 TTCGTAAACGACGAAGGGCACGCGGGTTACCGGAAATATCTTTCTTATGTTTACGTTTAA 7424 || | ||| || || || || | || || || || || ||| || || | || Sbjct 518443 AGCGGAGACGGCGGAGCGCGCGGGCGTCGCCCGAGATGTCGAGCTTGGTCTTGCGCTCAA 518502 Query 7425 ACTCTTCAGAGAAGTG-TCGAAGGAGTCTCGAATCGAAATCTTCACCACCCAAGTGTGTA 7483 |||| | |||||| |||| |||| | || || || ||||| || | ||| || Sbjct 518503 ACTCCTTCTTGAAGTGCTCGA-GGAGCGTGTTGTCAAAGTCCTCACCGCCGAGGTGGGTG 518561 Query 7484 TCCCCCGCGGTCGCTTTGACTTCAAAGATACCTCCTTCAATGTTTAACAACGAAACATCA 7543 || || || ||||| ||||| |||||| || || || | | ||| ||||| Sbjct 518562 TCTCCGGCCGTCGCCTTGACGGCAAAGACGCCACCGGTGATCGAGAGGAGCGAGACATCG 518621 Query 7544 AACGTACCACCACCCAGGTCAAAAATGAGTACGTTCGTATCGT-------CGTCTTTGTT 7596 ||||| || || || ||||| || ||||| || || | || | | ||| || Sbjct 518622 AACGTGCCGCCTCCGAGGTCGAAGATGAGGACAATCTTCTCCTTCTTCGACTTCTCGGTC 518681 Query 7597 --CTTATCGAGACCGTACGCGATAGCCGCCGCCGTTGGTTCATTAATAATACGAAGACAG 7654 || |||||||||||||||| || ||||| || || || || || || || || | Sbjct 518682 GCCTCGCCGAGACCGTACGCGATGGCAGCCGCGGTGGGCTCGTTGATGATGCGGAGGACG 518741 Query 7655 TTCAGGCCAGCAATAGTTGCCGCATCTTTCGTCGCTTGTCGTTGCGAATCGTTAAAGTAG 7714 | |||||||| || || | || || || |||| | || ||||| ||||| |||||| Sbjct 518742 TCGAGGCCAGCGATCGTGCCAGCGTCCTTGGTCGAGAGACGCTGCGAGTCGTTGAAGTAG 518801 Query 7715 GCCGGGACCGTTACGACCGCGTCCGTGACTTTCTTACCGAGATACGATTCCGCGATATCT 7774 || |||||||| | ||| || | | |||| | ||| || | | | || || | || Sbjct 518802 GCAGGGACCGTGATGACGGCCTTCTTGACCTCCTTGCCAATCTTGGCCTCGGCCGTCTCC 518861 Query 7775 TTCATTTTGGTAAGAACCATCGATGAAATCTC 7806 || | |||| |||||||| | || ||||| Sbjct 518862 TTGAGCTTGGAGAGAACCATGGCCGAGATCTC 518893 >seq187 Length=297707 Score = 132 bits (146), Expect = 6e-26 Identities = 420/647 (65%), Gaps = 12/647 (2%) Strand=Plus/Plus Query 7457 TCGAAATCTTCACCACCCAAGTGTGTATCCCCCGCGGTCGCTTTGACTTCAAAGATACCT 7516 || || || || || || | ||| || || || ||||| || |||||| || | ||| Sbjct 1280 TCAAAGTCCTCGCCGCCGAGGTGGGTGTCACCGGCGGTGGCGAGGACTTCGAACACACCG 1339 Query 7517 CCTTCAATGTTTAACAACGAAACATCAAACGTACCACCACCCAGGTCAAAAATGAGTACG 7576 | || || | | ||| || || ||||| || || || ||||| | | || | | Sbjct 1340 TCGTCGATCGAGAGGAGCGAGACGTCGAACGTGCCGCCGCCGAGGTCGTAGACGATGATG 1399 Query 7577 TTCGTATCGTCGTCTTTGTTCTTATCGAGACCGTACGCGATAGCCGCCGCCGTTGGTTCA 7636 || ||| || | | |||| ||||| ||||||||||| || || ||||| || || Sbjct 1400 TTGCGCTCGCCGCC---GGTCTTGTCGAGTCCGTACGCGATCGCGGCGGCCGTCGGCTCG 1456 Query 7637 TTAATAATACGAAGACAGTTCAGGCCAGCAATAGTTGCCGCATCTTTCGTCGCTTGTCGT 7696 || | | || || ||| || || || || || | || || || || || || || Sbjct 1457 TTGACGACGCGGAGGACGTTGAGACCCGCGATCGTGCCGGCGTCCTTGGTGGCCTGGCGC 1516 Query 7697 TGCGAATCGTTAAAGTAGGCCGGGACCGTTACGACCGCGTCCGTGACTTTCTTACCGAGA 7756 || | ||||| |||||||||||||| || ||||| |||| |||||| || | ||||| Sbjct 1517 TGGGCGTCGTTGAAGTAGGCCGGGACGGTGACGACGGCGTGCGTGACCTTGGTTCCGAGG 1576 Query 7757 TACGATTCCGCGATATCTTTCATTTTGGTAAGAACCATCGATGAAATCTCTTCAGCCGCA 7816 |||| || || | || ||||| ||| || ||||| | || | ||| || | | Sbjct 1577 TACGTCTCGGCCGTCTCCTTCATCTTGCCGAGGACCATGGCCGAGACCTCCTCGGGGGTG 1636 Query 7817 AA---CTGTTTCGTTTCACCGTTAAAATCAACTTCAATCATGGGTTTATCCGCAGCACCG 7873 || || || | || ||| | | || || |||| ||| | | || | ||| Sbjct 1637 AATGTCTTGCTCTTGTCGCCG---ACCTTGACCTCGATCACGGGCTGCTTCGTCGAGCCG 1693 Query 7874 GGGATAACCTTATACGACCAATCTTTCATATCGTCTTGGACCTGTTGGTCCGAAAACTTT 7933 | | ||||| ||| | | |||| ||| ||||||| | ||| ||| Sbjct 1694 GCCTTGACCTTGAACGGGTAGTGCGTCATGTCGCGCTGGACCTCCTTGTCGTCAAAGCGG 1753 Query 7934 CTTCCGATAAGACGCTTTGCATCAAAAACTGTGTTTTTGGGGTTCATGGCTGTTTGGTTC 7993 | |||||| || ||||| || ||||| | ||||| | |||||| ||| |||||| Sbjct 1754 CGTCCGATCAGGCGCTTGGCGTCAAAGATCGTGTTGGTCGGGTTCGAGGCGTACTGGTTC 1813 Query 7994 TTCGCCGCGTCCCCGATAAGACGTT--CATTATTTTCCGTA-AACGCGACGTACGATGGG 8050 || || ||||| ||||| || || | | | | | || |||||||| || ||| Sbjct 1814 TTGGCGGCGTCGCCGATCAGGCGCTCGCCGGACGAGGGGGAGAAGGCGACGTAGGACGGG 1873 Query 8051 GTCGTTCGATTCCCTTGGTCGTTCGCAATAATTTCTACGCGGTCGTT 8097 || | || || || |||||||| || || || || ||||| |||| Sbjct 1874 GTGATGCGGTTGCCCTGGTCGTTGGCGATGATCTCGACGCGACCGTT 1920 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 635131069263120