Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhodotorula_20toruloides_20[genbank_20GCA_5F000988875.1_202015-05- 06] 218 sequences; 20,361,044 total letters Query= NC_015326.1 Length=346754 Score E Sequences producing significant alignments: (Bits) Value seq207 122 2e-22 seq165 111 3e-19 seq215 109 1e-18 seq172 91.5 3e-13 >seq207 Length=219063 Score = 122 bits (134), Expect = 2e-22 Identities = 156/215 (73%), Gaps = 0/215 (0%) Strand=Plus/Minus Query 194926 CTCAAAACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCA 194985 ||||| || || || || || ||||| || || || ||||| ||| || || | || Sbjct 76601 CTCAACACCAGATGGAGTGTAGACTCCTTCTGGATGTTGTAGTCGCTGAGCGTGCGACCG 76542 Query 194986 TCTTCGAGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTG 195045 || || |||||||| || |||||||| | || || ||||| ||||| || || || ||| Sbjct 76541 TCCTCAAGCTGCTTGCCCGCGAAGATCAAGCGCTGCTGGTCGGGAGGGATTCCCTCCTTG 76482 Query 195046 TCTTGAATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACC 195105 || ||||| || ||||||||| || |||||||||||| || || || ||||| | Sbjct 76481 TCCTGAATCTTGGCCTTGACGTTGTCGATGGTGTCCGAAGACTCGACCTCGAGGGTGATG 76422 Query 195106 GTCTTTCCTGTCAAAGTTTTTACGAACACTTGCAT 195140 ||||| || || | || || ||||| | ||||| Sbjct 76421 GTCTTGCCGGTGAGGGTCTTGACGAAGATCTGCAT 76387 Score = 122 bits (134), Expect = 2e-22 Identities = 118/152 (78%), Gaps = 0/152 (0%) Strand=Plus/Minus Query 194932 ACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCG 194991 || ||||| || || |||||||| || ||||| ||||| | |||||| | || || ||| Sbjct 76890 ACGAGGTGGAGGGTCGACTCTTTCTGGATATTATAATCCGAAAGAGTACGACCGTCCTCG 76831 Query 194992 AGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGA 195051 |||||||| || |||||||| | || |||||||| ||||| || || || || || ||| Sbjct 76830 AGCTGCTTCCCCGCGAAGATCAAGCGCTGTTGGTCGGGAGGGATTCCCTCCTTATCCTGA 76771 Query 195052 ATTTTTTGCTTGACGTTCTCAATGGTGTCCGA 195083 || || ||||||||| || |||||||| || Sbjct 76770 ATCTTGGCCTTGACGTTGTCGATGGTGTCGGA 76739 >seq165 Length=391853 Score = 111 bits (122), Expect = 3e-19 Identities = 105/134 (78%), Gaps = 0/134 (0%) Strand=Plus/Minus Query 194932 ACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCG 194991 || ||||| || || |||||||| || || |||||||| | |||||| | ||||| ||| Sbjct 99478 ACGAGGTGGAGGGTCGACTCTTTCTGGATGTTGTAATCCGAAAGAGTACGACCATCCTCG 99419 Query 194992 AGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGA 195051 |||||||| || ||||||||||| || || ||||| ||||| || || || ||||| || Sbjct 99418 AGCTGCTTCCCCGCGAAGATAAGACGCTGCTGGTCGGGAGGGATTCCCTCCTTGTCCTGG 99359 Query 195052 ATTTTTTGCTTGAC 195065 || || |||||| Sbjct 99358 ATCTTGGCCTTGAC 99345 Score = 107 bits (118), Expect = 4e-18 Identities = 104/134 (78%), Gaps = 0/134 (0%) Strand=Plus/Minus Query 194932 ACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCG 194991 || ||||| || || |||||||| || || |||||||| | |||||| | || || ||| Sbjct 99918 ACGAGGTGGAGGGTCGACTCTTTCTGGATGTTGTAATCCGAAAGAGTACGACCGTCCTCG 99859 Query 194992 AGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGA 195051 |||||||| || ||||||||||| || || ||||| ||||| || || || ||||| || Sbjct 99858 AGCTGCTTCCCCGCGAAGATAAGACGCTGCTGGTCGGGAGGGATTCCCTCCTTGTCCTGG 99799 Query 195052 ATTTTTTGCTTGAC 195065 || || |||||| Sbjct 99798 ATCTTGGCCTTGAC 99785 >seq215 Length=181685 Score = 109 bits (120), Expect = 1e-18 Identities = 126/170 (74%), Gaps = 0/170 (0%) Strand=Plus/Minus Query 194932 ACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCG 194991 || |||||||| || ||||| || || || ||||| || | || || | || || ||| Sbjct 75642 ACGAGGTGAAGGGTCGACTCCTTCTGGATGTTGTAGTCCGAGAGGGTGCGGCCGTCCTCG 75583 Query 194992 AGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGA 195051 |||||||| || |||||||| || || || ||||| || || ||||| || ||||| || Sbjct 75582 AGCTGCTTGCCGGCGAAGATGAGGCGCTGCTGGTCAGGGGGGATGCCCTCCTTGTCCTGG 75523 Query 195052 ATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGT 195101 || || ||||||||| || || |||||||| || || || ||||| Sbjct 75522 ATCTTGGCCTTGACGTTGTCGATCGTGTCCGACGACTCGACCTCGAGGGT 75473 >seq172 Length=285481 Score = 91.5 bits (100), Expect = 3e-13 Identities = 95/125 (76%), Gaps = 0/125 (0%) Strand=Plus/Plus Query 194932 ACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCG 194991 || ||||| || || ||||| || || || ||||| || | |||||| | || || ||| Sbjct 52561 ACGAGGTGGAGGGTCGACTCCTTCTGGATGTTGTAGTCCGAAAGAGTGCGGCCGTCCTCG 52620 Query 194992 AGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGA 195051 |||||||| || |||||||| || || || ||||| || || ||||| || ||||| || Sbjct 52621 AGCTGCTTGCCGGCGAAGATCAGGCGCTGCTGGTCGGGGGGGATGCCCTCCTTGTCCTGG 52680 Query 195052 ATTTT 195056 || || Sbjct 52681 ATCTT 52685 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1109478501079206