Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Rhodotorula_20toruloides_20[genbank_20GCA_5F000988875.1_202015-05-
06] 218 sequences; 20,361,044 total letters
Query= NC_015326.1
Length=346754
Score E
Sequences producing significant alignments: (Bits) Value
seq207 122 2e-22
seq165 111 3e-19
seq215 109 1e-18
seq172 91.5 3e-13
>seq207
Length=219063
Score = 122 bits (134), Expect = 2e-22
Identities = 156/215 (73%), Gaps = 0/215 (0%)
Strand=Plus/Minus
Query 194926 CTCAAAACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCA 194985
||||| || || || || || ||||| || || || ||||| ||| || || | ||
Sbjct 76601 CTCAACACCAGATGGAGTGTAGACTCCTTCTGGATGTTGTAGTCGCTGAGCGTGCGACCG 76542
Query 194986 TCTTCGAGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTG 195045
|| || |||||||| || |||||||| | || || ||||| ||||| || || || |||
Sbjct 76541 TCCTCAAGCTGCTTGCCCGCGAAGATCAAGCGCTGCTGGTCGGGAGGGATTCCCTCCTTG 76482
Query 195046 TCTTGAATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACC 195105
|| ||||| || ||||||||| || |||||||||||| || || || ||||| |
Sbjct 76481 TCCTGAATCTTGGCCTTGACGTTGTCGATGGTGTCCGAAGACTCGACCTCGAGGGTGATG 76422
Query 195106 GTCTTTCCTGTCAAAGTTTTTACGAACACTTGCAT 195140
||||| || || | || || ||||| | |||||
Sbjct 76421 GTCTTGCCGGTGAGGGTCTTGACGAAGATCTGCAT 76387
Score = 122 bits (134), Expect = 2e-22
Identities = 118/152 (78%), Gaps = 0/152 (0%)
Strand=Plus/Minus
Query 194932 ACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCG 194991
|| ||||| || || |||||||| || ||||| ||||| | |||||| | || || |||
Sbjct 76890 ACGAGGTGGAGGGTCGACTCTTTCTGGATATTATAATCCGAAAGAGTACGACCGTCCTCG 76831
Query 194992 AGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGA 195051
|||||||| || |||||||| | || |||||||| ||||| || || || || || |||
Sbjct 76830 AGCTGCTTCCCCGCGAAGATCAAGCGCTGTTGGTCGGGAGGGATTCCCTCCTTATCCTGA 76771
Query 195052 ATTTTTTGCTTGACGTTCTCAATGGTGTCCGA 195083
|| || ||||||||| || |||||||| ||
Sbjct 76770 ATCTTGGCCTTGACGTTGTCGATGGTGTCGGA 76739
>seq165
Length=391853
Score = 111 bits (122), Expect = 3e-19
Identities = 105/134 (78%), Gaps = 0/134 (0%)
Strand=Plus/Minus
Query 194932 ACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCG 194991
|| ||||| || || |||||||| || || |||||||| | |||||| | ||||| |||
Sbjct 99478 ACGAGGTGGAGGGTCGACTCTTTCTGGATGTTGTAATCCGAAAGAGTACGACCATCCTCG 99419
Query 194992 AGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGA 195051
|||||||| || ||||||||||| || || ||||| ||||| || || || ||||| ||
Sbjct 99418 AGCTGCTTCCCCGCGAAGATAAGACGCTGCTGGTCGGGAGGGATTCCCTCCTTGTCCTGG 99359
Query 195052 ATTTTTTGCTTGAC 195065
|| || ||||||
Sbjct 99358 ATCTTGGCCTTGAC 99345
Score = 107 bits (118), Expect = 4e-18
Identities = 104/134 (78%), Gaps = 0/134 (0%)
Strand=Plus/Minus
Query 194932 ACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCG 194991
|| ||||| || || |||||||| || || |||||||| | |||||| | || || |||
Sbjct 99918 ACGAGGTGGAGGGTCGACTCTTTCTGGATGTTGTAATCCGAAAGAGTACGACCGTCCTCG 99859
Query 194992 AGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGA 195051
|||||||| || ||||||||||| || || ||||| ||||| || || || ||||| ||
Sbjct 99858 AGCTGCTTCCCCGCGAAGATAAGACGCTGCTGGTCGGGAGGGATTCCCTCCTTGTCCTGG 99799
Query 195052 ATTTTTTGCTTGAC 195065
|| || ||||||
Sbjct 99798 ATCTTGGCCTTGAC 99785
>seq215
Length=181685
Score = 109 bits (120), Expect = 1e-18
Identities = 126/170 (74%), Gaps = 0/170 (0%)
Strand=Plus/Minus
Query 194932 ACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCG 194991
|| |||||||| || ||||| || || || ||||| || | || || | || || |||
Sbjct 75642 ACGAGGTGAAGGGTCGACTCCTTCTGGATGTTGTAGTCCGAGAGGGTGCGGCCGTCCTCG 75583
Query 194992 AGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGA 195051
|||||||| || |||||||| || || || ||||| || || ||||| || ||||| ||
Sbjct 75582 AGCTGCTTGCCGGCGAAGATGAGGCGCTGCTGGTCAGGGGGGATGCCCTCCTTGTCCTGG 75523
Query 195052 ATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGT 195101
|| || ||||||||| || || |||||||| || || || |||||
Sbjct 75522 ATCTTGGCCTTGACGTTGTCGATCGTGTCCGACGACTCGACCTCGAGGGT 75473
>seq172
Length=285481
Score = 91.5 bits (100), Expect = 3e-13
Identities = 95/125 (76%), Gaps = 0/125 (0%)
Strand=Plus/Plus
Query 194932 ACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCG 194991
|| ||||| || || ||||| || || || ||||| || | |||||| | || || |||
Sbjct 52561 ACGAGGTGGAGGGTCGACTCCTTCTGGATGTTGTAGTCCGAAAGAGTGCGGCCGTCCTCG 52620
Query 194992 AGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGA 195051
|||||||| || |||||||| || || || ||||| || || ||||| || ||||| ||
Sbjct 52621 AGCTGCTTGCCGGCGAAGATCAGGCGCTGCTGGTCGGGGGGGATGCCCTCCTTGTCCTGG 52680
Query 195052 ATTTT 195056
|| ||
Sbjct 52681 ATCTT 52685
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1109478501079206
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |