Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Rhodotorula_20toruloides_20[genbank_20GCA_5F000988875.1_202015-05-
06] 218 sequences; 20,361,044 total letters
Query= NC_019491.1
Length=291144
Score E
Sequences producing significant alignments: (Bits) Value
seq196 161 2e-34
seq165 141 2e-28
seq175 89.7 1e-12
>seq196
Length=101194
Score = 161 bits (178), Expect = 2e-34
Identities = 532/817 (65%), Gaps = 24/817 (3%)
Strand=Plus/Minus
Query 213599 GTTGGCAGAATCCTTGTAGAGCATGTAGGGGGACCCGGTCTCTAGCTGGGACACCAGTAT 213658
|||||| | |||||||||||||||| ||||| || ||||| | ||||| | | || |
Sbjct 13809 GTTGGCGGCATCCTTGTAGAGCATGAAGGGGTTGCCCGTCTCGACCTGGGCCTCGAGGAC 13750
Query 213659 CTGGCTCCAGAGGTACCTGGCCTTGACCACCCGCCTGACAGCTCCGGGCGTAGCCTCGTA 213718
| |||||| | | ||| || ||| || | || | | ||||||
Sbjct 13749 GGCGTACCAGAGCTTCTGGGCGGGGATGGTGCGCTTGGCGCGACCCTCCTT---CTCGTA 13693
Query 213719 CTGTTCGTAGAGCTCGTTGAATTCGTGGCCCCAGACCCTGTCCAGTCCCGGACAGGATGC 213778
|| ||| ||||||| ||||| |||| ||| ||||| || || || || ||
Sbjct 13692 CTTTTCAAAGAGCTCCTTGAACTCGTCGCCGTAGACCTCGTGGAGACCGGGCGCCTCGGC 13633
Query 213779 GGGACACATGAGGCTCCAGTCCCCGTCAT-CTCTGACTCTCTGCATGAACAGGTCCGGGA 213837
|| || | |||| |||||| |||| | ||| ||| | || |||||| ||||| ||||
Sbjct 13632 CGGGCAGAAGAGGGGCCAGTCGCCGTTCTGCTC-GACACGCTCCATGAAGAGGTCGGGGA 13574
Query 213838 CCCACAGCGCGGTGAACAGGTCCCTGGTCCTCCTCTCGTCCACTCCAGAGTTTTTGCGCA 213897
||| || || ||||| ||| | | | ||| ||| || ||| ||||| |
Sbjct 13573 TCCAAAGGGCAAAGAACAAGTCGCGCGCGCGGACCTCCTCCTTGCCGTGGTTCTTGCGGA 13514
Query 213898 GATCTAGAAAGTCAAAGATGTCCGCGTGCCACGGCTCCATGTAGATGGCAAAGGCGCCCG 213957
| || || || || |||||||| |||||||||||||| | ||||||||| || |||||||
Sbjct 13513 GGTCGAGGAACTCGAAGATGTCGGCGTGCCACGGCTCGAGGTAGATGGCGAACGCGCCCG 13454
Query 213958 ---GCCTCTTGCCGCCCTGGTCCACCAGCCTGGCCACCATGTTGAAGATGCGCAGGACGG 214014
|| | ||||| |||||||| || | ||| ||||| | | ||| || | ||
Sbjct 13453 GGCGCTTGTTGCCTCCCTGGTCGACGTAGCGCGCCGTGTTGTTGTACACGCGGAGCATGG 13394
Query 214015 GTACCAGCCCGTTGGACTGTCCGTTGGTTCCCGCTATATACGAGCCGGAGGCCCTCAGGT 214074
| | | ||||| || | ||||| || || || || ||||| |||| || | | ||
Sbjct 13393 GGATGATGCCGTTCGAGTAGCCGTTCGTGCCGGCGATGTACGAACCGGTCGCGCGGATGT 13334
Query 214075 TGCTCATGGAGAGCCCTATGCCACCGGCGTACTTGGAGATCATGGCGCAGCGCCTCACAG 214134
|| || ||||| || ||||| || || ||||||||| | ||||| | | | |
Sbjct 13333 TGTGGATCGAGAGGCCGATGCCGCCTGCCGTCTTGGAGATGAGCGCGCACGTCTTGAGCG 13274
Query 214135 TCTCCATGATGCCGGCCATGCTGTCATCTGTGAGGTTCAGCAAGAAGCAGCTCGAGAGCT 214194
| || |||||| | || ||| || | | | | | |||||| ||||||||
Sbjct 13273 TGTCGTAGATGCCCTCGATCGAGTCGTCCTTCATCGTGACGAGGAAGCACGACGAGAGCT 13214
Query 214195 GGGGCCTGGACGAGCCAGAGTTGAAAAGCGTGGGGCTGGCATGGATCATAAACTTGTTAG 214254
| || | || ||| | |||||| ||||| || || || | | || | |
Sbjct 13213 GCGGGTGCGGCGTGCCGGCGTTGAAGAGCGTCGGCGACGCGTGCGTAAAGTACCGCTCCG 13154
Query 214255 AGAGGAGCCTGTAGGTCTCCAGGACTGAGGGG---ATGTCGTGCTTGTGGATCTGTAGAG 214311
| | ||| |||| ||||| || | | || ||||||| ||||| || ||
Sbjct 13153 ACATGAGGTTGTACGTCTC---GATCGCGCGGTCAATGTCGTCGCCGTGGA--TGCCGAC 13099
Query 214312 CGC-AC-CTCATCAGCATGTGCTGGGGCCTCTCTATGGGTCCTTTGGGGCC---CTTGAG 214366
||| || | ||| ||||||||||| || | ||| || | ||| | | |||
Sbjct 13098 CGCGACGCGCATGAGCATGTGCTGCGGTCGCTC---GGCCACCTTGCCGTCGAGGCGGAG 13042
Query 214367 CAGGTAGGAGCGCTCCAGAGTCTTGAACCCAAAGTAG 214403
|||||| || ||||| || |||||||| || ||||||
Sbjct 13041 CAGGTACGACCGCTCGAGCGTCTTGAAGCCGAAGTAG 13005
Score = 109 bits (120), Expect = 1e-18
Identities = 376/583 (64%), Gaps = 34/583 (6%)
Strand=Plus/Minus
Query 212577 GCAGCCTTGGTGCGTAGATAGTACATGCCGGTCTTTAGGCCCTTGCCCCAGCCGTGCATG 212636
||||| |||||| || ||||||||||| ||||| || || || ||| |||| | |
Sbjct 14952 GCAGCGCGGGTGCGGAGGTAGTACATGCCCGTCTTGAGACCTTTCTTCCATCCGTAGAAG 14893
Query 212637 TGCATTGCTGTGAGTTTCTTCAGCTTAATATTCTGGTCATCCTCGTGGCCCAGATGTAGG 212696
||||| | ||||| | | || ||||| | || | || || | |
Sbjct 14892 TGCATCGACGTGAGCTGCGCCA-----------TGGTCGGCGACGAG----AGGTGGACG 14848
Query 212697 TTCAGGGACTGACTCTGGTCTATGAATGGGGCCCTGTCAGCGGCCATGTCTATGATATCT 212756
|| || ||||| |||||| ||||| | | | | ||| ||||| | ||| |||| |
Sbjct 14847 TTGAGCGACTGCGACTGGTCGATGAACGCGCCGCGGTCGGCGGCGAGGTCGATGACGACC 14788
Query 212757 CTCTGGGAGAGCTCCCACACGGTCTTGAAGATTTCTTTGAGGTCCTCTGGGAAGCCGGGG 212816
| || |||| |||||||||||||||| |||| ||||| || || |||| |||||||
Sbjct 14787 TTTTGCGAGATCTCCCACACGGTCTTGTAGATGCGCTTGAGCTCGTCGGGGATGCCGGGG 14728
Query 212817 ATGTTCTGCACAGACCCCCTGTG---TATGGTCAGCTGCAGGCGCATGTCCTCGTTCCAG 212873
| |||||| | || || |||| ||| || | | ||| | ||||||||
Sbjct 14727 ACGTTCTGGATCGAGCCGTTGTGCGCGATGATCGTGTTC---TTCATCGCGTCGTTCCAC 14671
Query 212874 AGGCCCCTGGTC-TCCAGGCACTTGACCAGGTGAGGGTTGACTATCTGGAAGTCACCTGA 212932
||||| | |||| | ||| || || |||||||| | |||||| || || |
Sbjct 14670 AGGCCGC-GGTCGACGAGGTCGCGGAGGAGCCAGGGGTTGACGACCTGGAACTCGCCGGC 14612
Query 212933 GAGCACCCTCCTCTGGTAAAAGTTTGAAGTGTAGGGCTCGATGCTCTCGTTGTTCCCCAG 212992
||| || | | ||| | ||| || ||||| ||||||| ||||||| || ||
Sbjct 14611 GAGGACGCGGCGGGTGTAGATGTTGGACGTGTACGGCTCGAACGCCTCGTTGAAGCCGAG 14552
Query 212993 AATCTGTGCAGTGCTGGCTGTGGGCATGGGAGCCACCAGGAGACTGTTCCTCACTCCGTG 213052
||||| || ||| || ||||| || || || ||| ||| | | |||||
Sbjct 14551 GATCTGGCTGGTCGAGGCGGTAGGCATCGGCGCGCACACGAGCGAGTTGCGGATGCCGTG 14492
Query 213053 CTCGCCGATGAGGCGCCGAAGCTCTGCCCAGTCCCATCTGCCAGACAGGTCC-TCGTCCT 213111
|| | || | | ||| |||||||||| |||||||| ||| |
Sbjct 14491 CTGCGCAATCTTCTCCTTCAACTCGGCCCAGTCCC---------ACAGGTCCGTCG-GCG 14442
Query 213112 TCACGTTCCACATGTCAAACTGCAAGATGCCTTTGCTCACGGG 213154
| |||||||||| || ||||||||| ||| | |||| ||||
Sbjct 14441 TGACGTTCCACAGATCGTACTGCAAGAGGCCGTGGCTCGCGGG 14399
>seq165
Length=391853
Score = 141 bits (156), Expect = 2e-28
Identities = 138/176 (78%), Gaps = 4/176 (2%)
Strand=Plus/Plus
Query 48178 GGAGAAGCAGAGACCAGGCATGACCCCCCTCTGTTTGAGCCAGAAAATTGCCGCGAAAGA 48237
||||||| ||| || ||||| | || | || ||||||||||| || | |||||| ||
Sbjct 48118 GGAGAAGGTGAGTCCGGGCATCAAGCCGCGCTTCTTGAGCCAGAAGATGGACGCGAACGA 48177
Query 48238 GCCAGAGAAGAAGATGCCCTCCACTGCCGCGAACGCGGTGAGCCTCTCTCCGA--AAGAA 48295
||| ||||||||||||||||| || || ||||||||| ||| | ||| |||| | | |
Sbjct 48178 GCCGGAGAAGAAGATGCCCTCGACGGCGGCGAACGCGACGAGACGCTCGCCGAAGACGGA 48237
Query 48296 GCGTTCTTGTCTGAGATCCAGGAAAGCGCCCAGTCTGCCTTCTTCTTGATGCATGG 48351
||| || ||| |||||||||| |||||||| || |||||||||| |||||| ||
Sbjct 48238 GCGGTC--GTCCGAGATCCAGGTGAGCGCCCACTCGGCCTTCTTCTGGATGCAAGG 48291
>seq175
Length=283523
Score = 89.7 bits (98), Expect = 1e-12
Identities = 102/137 (74%), Gaps = 0/137 (0%)
Strand=Plus/Minus
Query 48454 GATCTGGAACCCGTAGAAGGCCCTGGCCTCAAACACCTGCACTTCTGTGGAGAATCTCTC 48513
||||||||| |||||||| | ||||| | |||||| || | ||||| |||||
Sbjct 257945 GATCTGGAAACCGTAGAAACAGCGCGCCTCGGCAATCTGCACCTCCGCCGAGAACCTCTC 257886
Query 48514 CAGCAGATTCTCATTGACTATCCCATCTGAAGCAGCAAAGAAGGCAAGGACATGTTTAAG 48573
|| || ||||| ||||| || || || ||||| || |||||||||||||| || |
Sbjct 257885 CACCAAGTTCTCGTTGACGATGCCGTCCGAAGCGGCGAAGAAGGCAAGGACGTGCGAGAT 257826
Query 48574 GAAATGGCGCTCGTTGT 48590
||| || ||||||||||
Sbjct 257825 GAAGTGTCGCTCGTTGT 257809
Score = 86.0 bits (94), Expect = 1e-11
Identities = 119/163 (73%), Gaps = 4/163 (2%)
Strand=Plus/Minus
Query 48191 CCAGGCATGACCCCCCTCTGTTTGAGCCAGAAAATTGCCGCGAAAGAGCCAGAGAAGAAG 48250
|| ||||| | || | || ||| |||||||| || | ||||| ||||| |||||||||
Sbjct 258325 CCGGGCATCAAGCCACGCTTTTTAAGCCAGAAGATCGAGGCGAACGAGCCGGAGAAGAAG 258266
Query 48251 ATGCCCTCCACTGCCGCGAACGCGGTGAGCCTCTCTCCG-AAAGA-AGCGTTCTTGTCTG 48308
|||||||| ||||| ||||| ||| || || |||| ||| | ||| ||| |
Sbjct 258265 ATGCCCTCGACTGCGGCGAAAGCGACCAG--TCGTTCCGCAAACACGGCGCGAGGGTCCG 258208
Query 48309 AGATCCAGGAAAGCGCCCAGTCTGCCTTCTTCTTGATGCATGG 48351
||||||| |||||||| || |||||||| |||||| ||
Sbjct 258207 AGATCCATCGCAGCGCCCACTCGGCCTTCTTGGCGATGCAGGG 258165
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 931530261573120
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |