Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Rhodotorula_20toruloides_20[genbank_20GCA_5F000988875.1_202015-05-
06] 218 sequences; 20,361,044 total letters
Query= NC_024625.1
Length=151109
Score E
Sequences producing significant alignments: (Bits) Value
seq196 264 1e-65
seq207 141 9e-29
seq165 109 5e-19
seq175 105 6e-18
seq215 102 8e-17
seq172 89.7 5e-13
seq49 84.2 2e-11
>seq196
Length=101194
Score = 264 bits (292), Expect = 1e-65
Identities = 461/660 (70%), Gaps = 13/660 (2%)
Strand=Plus/Minus
Query 149033 GCGACCCTCCTGCTCGTATAAAGTATACAGCCGCTCGAACGCCTCGCCGTAGCAATCGTC 149092
||||||||||| |||||| | | ||| || |||| | ||||||||| ||||
Sbjct 13710 GCGACCCTCCTTCTCGTACTTTTCAAAGAGCTCCTTGAACTCGTCGCCGTAGACCTCGTG 13651
Query 149093 GAGACCGGGGCACTTGTGCGGGCACATGAGCGACCACACGCCGTCCGCGTACACGCGCTT 149152
||||||||| || | |||||| | ||| | ||| |||||| | | || ||||
Sbjct 13650 GAGACCGGGCGCCTCGGCCGGGCAGAAGAGGGGCCAGTCGCCGTTCTGCTCGACACGCTC 13591
Query 149153 CATAAACAGATCGGGCACCCAGAGCGCGTACATGAGGTCGCGCGCCTTGCAGTCTTCGGC 149212
||| || || ||||| | ||| || || | | | ||||||||| | || ||
Sbjct 13590 CATGAAGAGGTCGGGGATCCAAAGGGCAAAGAACAAGTCGCGCGCGCGGACCTCCTCCTT 13531
Query 149213 GCCCATGTTGCGGCGCAGGTTGAGCACGCTGAATATGTCCGCGTGCCACGGCTCAATGTA 149272
||| ||| ||| |||| ||| | ||| ||||| |||||||||||||| | |||
Sbjct 13530 GCCGTGGTTCTTGCGGAGGTCGAGGAACTCGAAGATGTCGGCGTGCCACGGCTCGAGGTA 13471
Query 149273 CACCGCGAGCGCGCCCTTGCGCTTG---CCGCCCTGGTCGACGTGGCGCACCATGTTGTT 149329
| |||| ||||||| ||||||| || ||||||||||||| |||| || |||||||
Sbjct 13470 GATGGCGAACGCGCCCGGGCGCTTGTTGCCTCCCTGGTCGACGTAGCGCGCCGTGTTGTT 13411
Query 149330 AAACACTCGAACCATAGGTTCAATGCCACTGGCAGT-GCCGTTAGTAGAGCTAATG--CG 149386
|||| || | ||| || ||||| | | ||| |||||| || | ||| ||
Sbjct 13410 GTACACGCGGAGCATGGGGATGATGCCGTTCG-AGTAGCCGTTCGTGCCGGCGATGTACG 13352
Query 149387 ACTGCCGCGCGCTCGCACTTTGTGCACGTTGACGCCGATGCCGCC-GCCGTACTTTGAGA 149445
| ||| ||| || | ||||| | || |||||||||||| ||||| ||| ||||
Sbjct 13351 AA--CCGGTCGCGCGGATGTTGTGGATCGAGAGGCCGATGCCGCCTGCCGT-CTTGGAGA 13295
Query 149446 TGGCCGCGCA-GTCGCCGAGCGTCGAGTAGATGCCCTCGATGCTGTCGCGCTTCATGGTC 149504
|| |||||| ||| |||||| ||||||||||||||| |||| |||||| ||
Sbjct 13294 TGAGCGCGCACGTCTT-GAGCGTGTCGTAGATGCCCTCGATCGAGTCGTCCTTCATCGTG 13236
Query 149505 AGCAGAAAGCACGAGCACATTTGCGGAAAACGCGTGCCGGCCGCGAACATGGTGGGGCTG 149564
| || |||||||| | | ||||| |||||||||| ||| | || ||
Sbjct 13235 ACGAGGAAGCACGACGAGAGCTGCGGGTGCGGCGTGCCGGCGTTGAAGAGCGTCGGCGAC 13176
Query 149565 GCGTGTGTAAAATATTTCTGGCTCATCATCTCGTACGACTCGAGCACGCGGTCCATGTCA 149624
||||| ||||| || || ||| | | ||||| ||||| | ||||||| |||||
Sbjct 13175 GCGTGCGTAAAGTACCGCTCCGACATGAGGTTGTACGTCTCGATCGCGCGGTCAATGTCG 13116
Query 149625 TCGCCATGGATGCCTATGGCGACGCGCATCAGCATATGCTGCGGTCGCTCCGCCACTTTG 149684
||||| |||||||| | ||||||||||| ||||| |||||||||||||| ||||| |||
Sbjct 13115 TCGCCGTGGATGCCGACCGCGACGCGCATGAGCATGTGCTGCGGTCGCTCGGCCACCTTG 13056
Score = 187 bits (206), Expect = 2e-42
Identities = 372/549 (68%), Gaps = 8/549 (1%)
Strand=Plus/Minus
Query 147951 GTGCGCAGATAGTACATGCCCGTCTTGAGGCCCATGCGCCATGCGTAGTCGTGCACCGAC 148010
||||| || |||||||||||||||||||| || | |||| ||||| ||||| ||||
Sbjct 14943 GTGCGGAGGTAGTACATGCCCGTCTTGAGACCTTTCTTCCATCCGTAGAAGTGCATCGAC 14884
Query 148011 GACATGAGCGTGTAC----GTCGGGTGCGGCACAAACAGATTAAACGACTGGCTCTGGTC 148066
| ||||| || | ||||| || | | || | |||||| ||||||
Sbjct 14883 G---TGAGC-TGCGCCATGGTCGGCGACGAGAGGTGGACGTTGAGCGACTGCGACTGGTC 14828
Query 148067 AATGAACGCGCCACGGTCAGCGGCCATTTCAATGAGTCGCTTTATCTTCATCTCCCAGGC 148126
||||||||||| ||||| ||||| | || |||| |||| | |||||||| |
Sbjct 14827 GATGAACGCGCCGCGGTCGGCGGCGAGGTCGATGACGACCTTTTGCGAGATCTCCCACAC 14768
Query 148127 CGTCTTGTACAGCCGCTTGATATGATCGGGAATGCCGTCGATGCGCTGCACCGAGCCGCG 148186
|||||||| | ||||||| | ||||| |||||| || | ||| | |||||||
Sbjct 14767 GGTCTTGTAGATGCGCTTGAGCTCGTCGGGGATGCCGGGGACGTTCTGGATCGAGCCGTT 14708
Query 148187 GTGCGCAAAAATCTGATTGCGCATTTCGTCCGTGTATAGGTTGAGCTCGATCAGGTCATC 148246
|||||| | ||| || ||| |||| | | ||| | | |||| |||||
Sbjct 14707 GTGCGCGATGATCGTGTTCTTCATCGCGTCGTTCCACAGGCCGCGGTCGACGAGGTCGCG 14648
Query 148247 GATCAGATACTGATTCACCACCTGAAACTCGCCGGCGAGCACGCGCCGCAGATACACGTT 148306
|| || | | || || ||||| |||||||||||||| ||||| || || | |||
Sbjct 14647 GAGGAGCCAGGGGTTGACGACCTGGAACTCGCCGGCGAGGACGCGGCGGGTGTAGATGTT 14588
Query 148307 GCTCGTAAACGGTTCAAACGACTCGTTGTTGCCCAAAATCTGCGCGGTCGTTGCCGTGGG 148366
| ||| |||| || |||| ||||||| ||| | ||||| ||||| || || ||
Sbjct 14587 GGACGTGTACGGCTCGAACGCCTCGTTGAAGCCGAGGATCTGGCTGGTCGAGGCGGTAGG 14528
Query 148367 CATGTACGCTACCAGCAGCGAGTTGCGCAAACCGCGATTTTTTATTTTGCGCTTCAGAGC 148426
||| ||| || ||||||||||| | ||| | | || || ||||| |
Sbjct 14527 CATCGGCGCGCACACGAGCGAGTTGCGGATGCCGTGCTGCGCAATCTTCTCCTTCAACTC 14468
Query 148427 CGCCCAGTCCCAGAGCGGCGACGGTGTCACGTTCCACATGTCGTACTGCAGAATGCCGCG 148486
||||||||||| || || ||| || |||||||||| |||||||||| | |||| |
Sbjct 14467 GGCCCAGTCCCACAGGTCCGTCGGCGTGACGTTCCACAGATCGTACTGCAAGAGGCCGTG 14408
Query 148487 GCTAGCGGG 148495
||| |||||
Sbjct 14407 GCTCGCGGG 14399
>seq207
Length=219063
Score = 141 bits (156), Expect = 9e-29
Identities = 153/200 (77%), Gaps = 2/200 (1%)
Strand=Plus/Minus
Query 133464 GTGGACTCTTTCTGTATATTGTAATCGCCCATCGTG-GACGAGTCCTCGAGCTGCTTGCC 133522
|| ||||| ||||| || ||||| |||| | |||| ||| |||||| |||||||||||
Sbjct 76583 GTAGACTCCTTCTGGATGTTGTAGTCGCTGAGCGTGCGACC-GTCCTCAAGCTGCTTGCC 76525
Query 133523 CGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTTTTGCTT 133582
|||| | || | |||||||||||||||||||| || |||||||| ||||| |||
Sbjct 76524 CGCGAAGATCAAGCGCTGCTGGTCGGGAGGGATTCCCTCCTTGTCCTGAATCTTGGCCTT 76465
Query 133583 GAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGGTCAGAGT 133642
|| | || | ||||| | | ||| || |||| ||||| ||| |||||||| || ||
Sbjct 76464 GACGTTGTCGATGGTGTCCGAAGACTCGACCTCGAGGGTGATGGTCTTGCCGGTGAGGGT 76405
Query 133643 TTTTACGAAAATCTGCATGG 133662
|| ||||| ||||||||||
Sbjct 76404 CTTGACGAAGATCTGCATGG 76385
Score = 95.1 bits (104), Expect = 1e-14
Identities = 120/163 (74%), Gaps = 4/163 (2%)
Strand=Plus/Minus
Query 133463 GGTGGACTCTTTCTGTATATTGTAATCGCCCATCGTGGACGA--GTCCTCGAGCTGCTTG 133520
||| ||||||||||| ||||| ||||| | | | | |||| |||||||||||||||
Sbjct 76879 GGTCGACTCTTTCTGGATATTATAATC--CGAAAGAGTACGACCGTCCTCGAGCTGCTTC 76822
Query 133521 CCCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTTTTGC 133580
|||||| | || | ||||| |||||||||||||| || ||||| || ||||| |
Sbjct 76821 CCCGCGAAGATCAAGCGCTGTTGGTCGGGAGGGATTCCCTCCTTATCCTGAATCTTGGCC 76762
Query 133581 TTGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGA 133623
|||| | || | ||||||| | ||| || |||| ||||
Sbjct 76761 TTGACGTTGTCGATGGTGTCGGACGACTCGACCTCGAGAGTGA 76719
Score = 95.1 bits (104), Expect = 1e-14
Identities = 96/125 (77%), Gaps = 0/125 (0%)
Strand=Plus/Minus
Query 133464 GTGGACTCTTTCTGTATATTGTAATCGCCCATCGTGGACGAGTCCTCGAGCTGCTTGCCC 133523
|| ||||||||||| || |||||||| | |||| |||||| |||||||| |||
Sbjct 77310 GTAGACTCTTTCTGGATGTTGTAATCTGAAAGCGTGCGTCCGTCCTCAAGCTGCTTCCCC 77251
Query 133524 GCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTTTTGCTTG 133583
||| | || | |||||||||||||||||||| || |||||||| |||||| ||||
Sbjct 77250 GCGAAGATCAAGCGCTGCTGGTCGGGAGGGATACCCTCCTTGTCCTGGATCTTAGCCTTG 77191
Query 133584 AGCTG 133588
| |||
Sbjct 77190 ACCTG 77186
>seq165
Length=391853
Score = 109 bits (120), Expect = 5e-19
Identities = 102/128 (80%), Gaps = 4/128 (3%)
Strand=Plus/Minus
Query 133463 GGTGGACTCTTTCTGTATATTGTAATCGCCCATCGTGGACGA--GTCCTCGAGCTGCTTG 133520
||| ||||||||||| || |||||||| | | | | |||| |||||||||||||||
Sbjct 99907 GGTCGACTCTTTCTGGATGTTGTAATC--CGAAAGAGTACGACCGTCCTCGAGCTGCTTC 99850
Query 133521 CCCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTTTTGC 133580
|||||| | || || |||||||||||||||||||| || |||||||| |||||| |
Sbjct 99849 CCCGCGAAGATAAGACGCTGCTGGTCGGGAGGGATTCCCTCCTTGTCCTGGATCTTGGCC 99790
Query 133581 TTGAGCTG 133588
|||| |||
Sbjct 99789 TTGACCTG 99782
Score = 104 bits (114), Expect = 2e-17
Identities = 101/128 (79%), Gaps = 4/128 (3%)
Strand=Plus/Minus
Query 133463 GGTGGACTCTTTCTGTATATTGTAATCGCCCATCGTGGACGAG--TCCTCGAGCTGCTTG 133520
||| ||||||||||| || |||||||| | | | | |||| ||||||||||||||
Sbjct 99467 GGTCGACTCTTTCTGGATGTTGTAATC--CGAAAGAGTACGACCATCCTCGAGCTGCTTC 99410
Query 133521 CCCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTTTTGC 133580
|||||| | || || |||||||||||||||||||| || |||||||| |||||| |
Sbjct 99409 CCCGCGAAGATAAGACGCTGCTGGTCGGGAGGGATTCCCTCCTTGTCCTGGATCTTGGCC 99350
Query 133581 TTGAGCTG 133588
|||| |||
Sbjct 99349 TTGACCTG 99342
Score = 98.7 bits (108), Expect = 1e-15
Identities = 215/313 (69%), Gaps = 13/313 (4%)
Strand=Plus/Plus
Query 120382 TTTGTTTTGCCCTCCATCGAAATGTTGTTCATAAACTCGAACGGGTTGCTCGCGTTAAAG 120441
|| || |||||||||||||| || | | ||| || |||||||||| || | || |
Sbjct 47716 TTGGTCTTGCCCTCCATCGAGATCATCTCCATGAAGTCGAACGGGT---TCTCCTTGTGG 47772
Query 120442 TATTTCGGCTGG--CCCAACTG-TACGAGCAGTCGGTCCGCTACAAACTCAATGTACTCG 120498
|| || || | |||| || || |||| ||||| || |||||||| ||||||| |
Sbjct 47773 TAGATCTTCTCGTTGCCAAGTGCGACAAGCAAGCGGTCGGCAACAAACTCGATGTACTGG 47832
Query 120499 CACATGGACTGCGC-GTTCATGCCCAGCAACGCCACCGGCAACGCCGACGTGAAAAACTC 120557
||||| || ||| ||||||||| | | | || |||| |||| ||||| |||||
Sbjct 47833 CACAT-GAGGTCGCTGTTCATGCCGATGAGCTTGACGGGCAGCGCCTCCGTGAGGAACTC 47891
Query 120558 CTTCTCAATGTCCACCGCCTCCTTGAACATG-GCGAGCATAGTGTGGCCGGGCATCTTGT 120616
| ||| || || |||||||| || ||| || | | |||| | | | |
Sbjct 47892 TTGCTCGATCTCGACCGCCTCGCGGATGATGCGCTCG-ACCGTGTCGGGGTGAGGGCGGC 47950
Query 120617 GTTCGATGCGCGTTCGGTAGTACAGGCACGCAAAGTCCGTGTGCAGGCCCTCGTCGCGCG 120676
| |||| | ||| | || ||||| |||||||| ||||| || || ||||||||||
Sbjct 47951 GCTCGAGGTGCG---AGAAGAGGAGGCAGGCAAAGTCGGTGTGGAGACCTTCGTCGCGCG 48007
Query 120677 ATATCAGCTCGTT 120689
| || ||||||||
Sbjct 48008 AGATGAGCTCGTT 48020
>seq175
Length=283523
Score = 105 bits (116), Expect = 6e-18
Identities = 219/315 (70%), Gaps = 17/315 (5%)
Strand=Plus/Minus
Query 120382 TTTGTTTTGCCCTCCATCGAAATGTTGTTCATAAACTCGAACGGGTTGCTCG-CGTT--A 120438
|| || |||||||||||||| || | | |||||| ||||||||||| |||| | || |
Sbjct 258701 TTGGTCTTGCCCTCCATCGAGATCATCTCCATAAAGTCGAACGGGTT-CTCGGCATTGTA 258643
Query 120439 AAGTATTTCGGCTGGCCCAACTGTACGAGCAGTCGGTCCGCTACAAACTCAATGTACTCG 120498
|| | ||| | || | | || |||| ||||||||| || ||||| |||||||
Sbjct 258642 CAGCTTCTCG--TTCCCAAGCGCGACAAGCAATCGGTCCGCGACGAACTCGATGTACTGT 258585
Query 120499 CACATGGACTGCGCGTTCATGCCCAGCAACGCCACCGGCAACGCCGACGTGAAAAACTCC 120558
| |||| |||||||||||| | ||| | || ||||| || ||| | || |||
Sbjct 258584 CGCATGAGGGTCGCGTTCATGCCGATCAAGCCGACGGGCAAGGCGTCCGTCAGGAATTCC 258525
Query 120559 TTCTCAATGTCCACCGCCTCCTTGAACAT---GGCGAGCATAGTGTGGC-CGGGCATCTT 120614
| ||| || || || || || || || ||||| | ||| ||| | || ||
Sbjct 258524 TGCTCGATCTCGACGGCTTCGGCGATGATTTGGGCGA-CGCGGTGAGGCGCTGG--TC-G 258469
Query 120615 GTGTTCGATGCGCGTTCGGTAGTACAGGCACGCAAAGTCCGTGTGCAGGCCCTCGTCGCG 120674
| | |||| | ||| | || ||||| |||||||| ||||| ||||| ||||||||
Sbjct 258468 GCGCTCGAGGTGCG---AGAAGAGGAGGCAGGCAAAGTCGGTGTGGAGGCCTTCGTCGCG 258412
Query 120675 CGATATCAGCTCGTT 120689
||| || ||||||||
Sbjct 258411 CGAGATGAGCTCGTT 258397
>seq215
Length=181685
Score = 102 bits (112), Expect = 8e-17
Identities = 119/161 (74%), Gaps = 0/161 (0%)
Strand=Plus/Minus
Query 133463 GGTGGACTCTTTCTGTATATTGTAATCGCCCATCGTGGACGAGTCCTCGAGCTGCTTGCC 133522
||| ||||| ||||| || ||||| || | ||| ||||||||||||||||||
Sbjct 75631 GGTCGACTCCTTCTGGATGTTGTAGTCCGAGAGGGTGCGGCCGTCCTCGAGCTGCTTGCC 75572
Query 133523 CGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTTTTGCTT 133582
||| | ||||| ||||||||||| || |||||||| |||||||| |||||| |||
Sbjct 75571 GGCGAAGATGAGGCGCTGCTGGTCAGGGGGGATGCCCTCCTTGTCCTGGATCTTGGCCTT 75512
Query 133583 GAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGA 133623
|| | || | |||||| | | ||| || |||| |||||
Sbjct 75511 GACGTTGTCGATCGTGTCCGACGACTCGACCTCGAGGGTGA 75471
>seq172
Length=285481
Score = 89.7 bits (98), Expect = 5e-13
Identities = 88/114 (77%), Gaps = 0/114 (0%)
Strand=Plus/Plus
Query 133463 GGTGGACTCTTTCTGTATATTGTAATCGCCCATCGTGGACGAGTCCTCGAGCTGCTTGCC 133522
||| ||||| ||||| || ||||| || | ||| ||||||||||||||||||
Sbjct 52572 GGTCGACTCCTTCTGGATGTTGTAGTCCGAAAGAGTGCGGCCGTCCTCGAGCTGCTTGCC 52631
Query 133523 CGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTT 133576
||| | || || |||||||||||||| |||||||| |||||||| ||||||
Sbjct 52632 GGCGAAGATCAGGCGCTGCTGGTCGGGGGGGATGCCCTCCTTGTCCTGGATCTT 52685
>seq49
Length=30792
Score = 84.2 bits (92), Expect = 2e-11
Identities = 99/134 (74%), Gaps = 0/134 (0%)
Strand=Plus/Minus
Query 133484 GTAATCGCCCATCGTGGACGAGTCCTCGAGCTGCTTGCCCGCGTAAATGAGCCGCTGCTG 133543
||| |||| || |||| | ||||||||||||||| || ||| | || | |||||||
Sbjct 13205 GTAGTCGCGCAGCGTGCGGGCGTCCTCGAGCTGCTTCCCAGCGAAGATCAAGCGCTGCTC 13146
Query 133544 GTCGGGAGGGATGCCTTCCTTGTCGGTGATCTTTTGCTTGAGCTGCTCAACCGTGTCGGT 133603
|||||| |||||||| |||||||| |||||| ||||| | | |||||||| |
Sbjct 13145 GTCGGGCGGGATGCCCTCCTTGTCCTGGATCTTGGTCTTGACGTCGTAGACCGTGTCAGA 13086
Query 133604 GGGCTCCACGTCGA 133617
|||| || ||||
Sbjct 13085 CAGCTCAACCTCGA 13072
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 483419482678320
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