Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhodotorula_20toruloides_20[genbank_20GCA_5F000988875.1_202015-05- 06] 218 sequences; 20,361,044 total letters Query= NC_024625.1 Length=151109 Score E Sequences producing significant alignments: (Bits) Value seq196 264 1e-65 seq207 141 9e-29 seq165 109 5e-19 seq175 105 6e-18 seq215 102 8e-17 seq172 89.7 5e-13 seq49 84.2 2e-11 >seq196 Length=101194 Score = 264 bits (292), Expect = 1e-65 Identities = 461/660 (70%), Gaps = 13/660 (2%) Strand=Plus/Minus Query 149033 GCGACCCTCCTGCTCGTATAAAGTATACAGCCGCTCGAACGCCTCGCCGTAGCAATCGTC 149092 ||||||||||| |||||| | | ||| || |||| | ||||||||| |||| Sbjct 13710 GCGACCCTCCTTCTCGTACTTTTCAAAGAGCTCCTTGAACTCGTCGCCGTAGACCTCGTG 13651 Query 149093 GAGACCGGGGCACTTGTGCGGGCACATGAGCGACCACACGCCGTCCGCGTACACGCGCTT 149152 ||||||||| || | |||||| | ||| | ||| |||||| | | || |||| Sbjct 13650 GAGACCGGGCGCCTCGGCCGGGCAGAAGAGGGGCCAGTCGCCGTTCTGCTCGACACGCTC 13591 Query 149153 CATAAACAGATCGGGCACCCAGAGCGCGTACATGAGGTCGCGCGCCTTGCAGTCTTCGGC 149212 ||| || || ||||| | ||| || || | | | ||||||||| | || || Sbjct 13590 CATGAAGAGGTCGGGGATCCAAAGGGCAAAGAACAAGTCGCGCGCGCGGACCTCCTCCTT 13531 Query 149213 GCCCATGTTGCGGCGCAGGTTGAGCACGCTGAATATGTCCGCGTGCCACGGCTCAATGTA 149272 ||| ||| ||| |||| ||| | ||| ||||| |||||||||||||| | ||| Sbjct 13530 GCCGTGGTTCTTGCGGAGGTCGAGGAACTCGAAGATGTCGGCGTGCCACGGCTCGAGGTA 13471 Query 149273 CACCGCGAGCGCGCCCTTGCGCTTG---CCGCCCTGGTCGACGTGGCGCACCATGTTGTT 149329 | |||| ||||||| ||||||| || ||||||||||||| |||| || ||||||| Sbjct 13470 GATGGCGAACGCGCCCGGGCGCTTGTTGCCTCCCTGGTCGACGTAGCGCGCCGTGTTGTT 13411 Query 149330 AAACACTCGAACCATAGGTTCAATGCCACTGGCAGT-GCCGTTAGTAGAGCTAATG--CG 149386 |||| || | ||| || ||||| | | ||| |||||| || | ||| || Sbjct 13410 GTACACGCGGAGCATGGGGATGATGCCGTTCG-AGTAGCCGTTCGTGCCGGCGATGTACG 13352 Query 149387 ACTGCCGCGCGCTCGCACTTTGTGCACGTTGACGCCGATGCCGCC-GCCGTACTTTGAGA 149445 | ||| ||| || | ||||| | || |||||||||||| ||||| ||| |||| Sbjct 13351 AA--CCGGTCGCGCGGATGTTGTGGATCGAGAGGCCGATGCCGCCTGCCGT-CTTGGAGA 13295 Query 149446 TGGCCGCGCA-GTCGCCGAGCGTCGAGTAGATGCCCTCGATGCTGTCGCGCTTCATGGTC 149504 || |||||| ||| |||||| ||||||||||||||| |||| |||||| || Sbjct 13294 TGAGCGCGCACGTCTT-GAGCGTGTCGTAGATGCCCTCGATCGAGTCGTCCTTCATCGTG 13236 Query 149505 AGCAGAAAGCACGAGCACATTTGCGGAAAACGCGTGCCGGCCGCGAACATGGTGGGGCTG 149564 | || |||||||| | | ||||| |||||||||| ||| | || || Sbjct 13235 ACGAGGAAGCACGACGAGAGCTGCGGGTGCGGCGTGCCGGCGTTGAAGAGCGTCGGCGAC 13176 Query 149565 GCGTGTGTAAAATATTTCTGGCTCATCATCTCGTACGACTCGAGCACGCGGTCCATGTCA 149624 ||||| ||||| || || ||| | | ||||| ||||| | ||||||| ||||| Sbjct 13175 GCGTGCGTAAAGTACCGCTCCGACATGAGGTTGTACGTCTCGATCGCGCGGTCAATGTCG 13116 Query 149625 TCGCCATGGATGCCTATGGCGACGCGCATCAGCATATGCTGCGGTCGCTCCGCCACTTTG 149684 ||||| |||||||| | ||||||||||| ||||| |||||||||||||| ||||| ||| Sbjct 13115 TCGCCGTGGATGCCGACCGCGACGCGCATGAGCATGTGCTGCGGTCGCTCGGCCACCTTG 13056 Score = 187 bits (206), Expect = 2e-42 Identities = 372/549 (68%), Gaps = 8/549 (1%) Strand=Plus/Minus Query 147951 GTGCGCAGATAGTACATGCCCGTCTTGAGGCCCATGCGCCATGCGTAGTCGTGCACCGAC 148010 ||||| || |||||||||||||||||||| || | |||| ||||| ||||| |||| Sbjct 14943 GTGCGGAGGTAGTACATGCCCGTCTTGAGACCTTTCTTCCATCCGTAGAAGTGCATCGAC 14884 Query 148011 GACATGAGCGTGTAC----GTCGGGTGCGGCACAAACAGATTAAACGACTGGCTCTGGTC 148066 | ||||| || | ||||| || | | || | |||||| |||||| Sbjct 14883 G---TGAGC-TGCGCCATGGTCGGCGACGAGAGGTGGACGTTGAGCGACTGCGACTGGTC 14828 Query 148067 AATGAACGCGCCACGGTCAGCGGCCATTTCAATGAGTCGCTTTATCTTCATCTCCCAGGC 148126 ||||||||||| ||||| ||||| | || |||| |||| | |||||||| | Sbjct 14827 GATGAACGCGCCGCGGTCGGCGGCGAGGTCGATGACGACCTTTTGCGAGATCTCCCACAC 14768 Query 148127 CGTCTTGTACAGCCGCTTGATATGATCGGGAATGCCGTCGATGCGCTGCACCGAGCCGCG 148186 |||||||| | ||||||| | ||||| |||||| || | ||| | ||||||| Sbjct 14767 GGTCTTGTAGATGCGCTTGAGCTCGTCGGGGATGCCGGGGACGTTCTGGATCGAGCCGTT 14708 Query 148187 GTGCGCAAAAATCTGATTGCGCATTTCGTCCGTGTATAGGTTGAGCTCGATCAGGTCATC 148246 |||||| | ||| || ||| |||| | | ||| | | |||| ||||| Sbjct 14707 GTGCGCGATGATCGTGTTCTTCATCGCGTCGTTCCACAGGCCGCGGTCGACGAGGTCGCG 14648 Query 148247 GATCAGATACTGATTCACCACCTGAAACTCGCCGGCGAGCACGCGCCGCAGATACACGTT 148306 || || | | || || ||||| |||||||||||||| ||||| || || | ||| Sbjct 14647 GAGGAGCCAGGGGTTGACGACCTGGAACTCGCCGGCGAGGACGCGGCGGGTGTAGATGTT 14588 Query 148307 GCTCGTAAACGGTTCAAACGACTCGTTGTTGCCCAAAATCTGCGCGGTCGTTGCCGTGGG 148366 | ||| |||| || |||| ||||||| ||| | ||||| ||||| || || || Sbjct 14587 GGACGTGTACGGCTCGAACGCCTCGTTGAAGCCGAGGATCTGGCTGGTCGAGGCGGTAGG 14528 Query 148367 CATGTACGCTACCAGCAGCGAGTTGCGCAAACCGCGATTTTTTATTTTGCGCTTCAGAGC 148426 ||| ||| || ||||||||||| | ||| | | || || ||||| | Sbjct 14527 CATCGGCGCGCACACGAGCGAGTTGCGGATGCCGTGCTGCGCAATCTTCTCCTTCAACTC 14468 Query 148427 CGCCCAGTCCCAGAGCGGCGACGGTGTCACGTTCCACATGTCGTACTGCAGAATGCCGCG 148486 ||||||||||| || || ||| || |||||||||| |||||||||| | |||| | Sbjct 14467 GGCCCAGTCCCACAGGTCCGTCGGCGTGACGTTCCACAGATCGTACTGCAAGAGGCCGTG 14408 Query 148487 GCTAGCGGG 148495 ||| ||||| Sbjct 14407 GCTCGCGGG 14399 >seq207 Length=219063 Score = 141 bits (156), Expect = 9e-29 Identities = 153/200 (77%), Gaps = 2/200 (1%) Strand=Plus/Minus Query 133464 GTGGACTCTTTCTGTATATTGTAATCGCCCATCGTG-GACGAGTCCTCGAGCTGCTTGCC 133522 || ||||| ||||| || ||||| |||| | |||| ||| |||||| ||||||||||| Sbjct 76583 GTAGACTCCTTCTGGATGTTGTAGTCGCTGAGCGTGCGACC-GTCCTCAAGCTGCTTGCC 76525 Query 133523 CGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTTTTGCTT 133582 |||| | || | |||||||||||||||||||| || |||||||| ||||| ||| Sbjct 76524 CGCGAAGATCAAGCGCTGCTGGTCGGGAGGGATTCCCTCCTTGTCCTGAATCTTGGCCTT 76465 Query 133583 GAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGGTCAGAGT 133642 || | || | ||||| | | ||| || |||| ||||| ||| |||||||| || || Sbjct 76464 GACGTTGTCGATGGTGTCCGAAGACTCGACCTCGAGGGTGATGGTCTTGCCGGTGAGGGT 76405 Query 133643 TTTTACGAAAATCTGCATGG 133662 || ||||| |||||||||| Sbjct 76404 CTTGACGAAGATCTGCATGG 76385 Score = 95.1 bits (104), Expect = 1e-14 Identities = 120/163 (74%), Gaps = 4/163 (2%) Strand=Plus/Minus Query 133463 GGTGGACTCTTTCTGTATATTGTAATCGCCCATCGTGGACGA--GTCCTCGAGCTGCTTG 133520 ||| ||||||||||| ||||| ||||| | | | | |||| ||||||||||||||| Sbjct 76879 GGTCGACTCTTTCTGGATATTATAATC--CGAAAGAGTACGACCGTCCTCGAGCTGCTTC 76822 Query 133521 CCCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTTTTGC 133580 |||||| | || | ||||| |||||||||||||| || ||||| || ||||| | Sbjct 76821 CCCGCGAAGATCAAGCGCTGTTGGTCGGGAGGGATTCCCTCCTTATCCTGAATCTTGGCC 76762 Query 133581 TTGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGA 133623 |||| | || | ||||||| | ||| || |||| |||| Sbjct 76761 TTGACGTTGTCGATGGTGTCGGACGACTCGACCTCGAGAGTGA 76719 Score = 95.1 bits (104), Expect = 1e-14 Identities = 96/125 (77%), Gaps = 0/125 (0%) Strand=Plus/Minus Query 133464 GTGGACTCTTTCTGTATATTGTAATCGCCCATCGTGGACGAGTCCTCGAGCTGCTTGCCC 133523 || ||||||||||| || |||||||| | |||| |||||| |||||||| ||| Sbjct 77310 GTAGACTCTTTCTGGATGTTGTAATCTGAAAGCGTGCGTCCGTCCTCAAGCTGCTTCCCC 77251 Query 133524 GCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTTTTGCTTG 133583 ||| | || | |||||||||||||||||||| || |||||||| |||||| |||| Sbjct 77250 GCGAAGATCAAGCGCTGCTGGTCGGGAGGGATACCCTCCTTGTCCTGGATCTTAGCCTTG 77191 Query 133584 AGCTG 133588 | ||| Sbjct 77190 ACCTG 77186 >seq165 Length=391853 Score = 109 bits (120), Expect = 5e-19 Identities = 102/128 (80%), Gaps = 4/128 (3%) Strand=Plus/Minus Query 133463 GGTGGACTCTTTCTGTATATTGTAATCGCCCATCGTGGACGA--GTCCTCGAGCTGCTTG 133520 ||| ||||||||||| || |||||||| | | | | |||| ||||||||||||||| Sbjct 99907 GGTCGACTCTTTCTGGATGTTGTAATC--CGAAAGAGTACGACCGTCCTCGAGCTGCTTC 99850 Query 133521 CCCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTTTTGC 133580 |||||| | || || |||||||||||||||||||| || |||||||| |||||| | Sbjct 99849 CCCGCGAAGATAAGACGCTGCTGGTCGGGAGGGATTCCCTCCTTGTCCTGGATCTTGGCC 99790 Query 133581 TTGAGCTG 133588 |||| ||| Sbjct 99789 TTGACCTG 99782 Score = 104 bits (114), Expect = 2e-17 Identities = 101/128 (79%), Gaps = 4/128 (3%) Strand=Plus/Minus Query 133463 GGTGGACTCTTTCTGTATATTGTAATCGCCCATCGTGGACGAG--TCCTCGAGCTGCTTG 133520 ||| ||||||||||| || |||||||| | | | | |||| |||||||||||||| Sbjct 99467 GGTCGACTCTTTCTGGATGTTGTAATC--CGAAAGAGTACGACCATCCTCGAGCTGCTTC 99410 Query 133521 CCCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTTTTGC 133580 |||||| | || || |||||||||||||||||||| || |||||||| |||||| | Sbjct 99409 CCCGCGAAGATAAGACGCTGCTGGTCGGGAGGGATTCCCTCCTTGTCCTGGATCTTGGCC 99350 Query 133581 TTGAGCTG 133588 |||| ||| Sbjct 99349 TTGACCTG 99342 Score = 98.7 bits (108), Expect = 1e-15 Identities = 215/313 (69%), Gaps = 13/313 (4%) Strand=Plus/Plus Query 120382 TTTGTTTTGCCCTCCATCGAAATGTTGTTCATAAACTCGAACGGGTTGCTCGCGTTAAAG 120441 || || |||||||||||||| || | | ||| || |||||||||| || | || | Sbjct 47716 TTGGTCTTGCCCTCCATCGAGATCATCTCCATGAAGTCGAACGGGT---TCTCCTTGTGG 47772 Query 120442 TATTTCGGCTGG--CCCAACTG-TACGAGCAGTCGGTCCGCTACAAACTCAATGTACTCG 120498 || || || | |||| || || |||| ||||| || |||||||| ||||||| | Sbjct 47773 TAGATCTTCTCGTTGCCAAGTGCGACAAGCAAGCGGTCGGCAACAAACTCGATGTACTGG 47832 Query 120499 CACATGGACTGCGC-GTTCATGCCCAGCAACGCCACCGGCAACGCCGACGTGAAAAACTC 120557 ||||| || ||| ||||||||| | | | || |||| |||| ||||| ||||| Sbjct 47833 CACAT-GAGGTCGCTGTTCATGCCGATGAGCTTGACGGGCAGCGCCTCCGTGAGGAACTC 47891 Query 120558 CTTCTCAATGTCCACCGCCTCCTTGAACATG-GCGAGCATAGTGTGGCCGGGCATCTTGT 120616 | ||| || || |||||||| || ||| || | | |||| | | | | Sbjct 47892 TTGCTCGATCTCGACCGCCTCGCGGATGATGCGCTCG-ACCGTGTCGGGGTGAGGGCGGC 47950 Query 120617 GTTCGATGCGCGTTCGGTAGTACAGGCACGCAAAGTCCGTGTGCAGGCCCTCGTCGCGCG 120676 | |||| | ||| | || ||||| |||||||| ||||| || || |||||||||| Sbjct 47951 GCTCGAGGTGCG---AGAAGAGGAGGCAGGCAAAGTCGGTGTGGAGACCTTCGTCGCGCG 48007 Query 120677 ATATCAGCTCGTT 120689 | || |||||||| Sbjct 48008 AGATGAGCTCGTT 48020 >seq175 Length=283523 Score = 105 bits (116), Expect = 6e-18 Identities = 219/315 (70%), Gaps = 17/315 (5%) Strand=Plus/Minus Query 120382 TTTGTTTTGCCCTCCATCGAAATGTTGTTCATAAACTCGAACGGGTTGCTCG-CGTT--A 120438 || || |||||||||||||| || | | |||||| ||||||||||| |||| | || | Sbjct 258701 TTGGTCTTGCCCTCCATCGAGATCATCTCCATAAAGTCGAACGGGTT-CTCGGCATTGTA 258643 Query 120439 AAGTATTTCGGCTGGCCCAACTGTACGAGCAGTCGGTCCGCTACAAACTCAATGTACTCG 120498 || | ||| | || | | || |||| ||||||||| || ||||| ||||||| Sbjct 258642 CAGCTTCTCG--TTCCCAAGCGCGACAAGCAATCGGTCCGCGACGAACTCGATGTACTGT 258585 Query 120499 CACATGGACTGCGCGTTCATGCCCAGCAACGCCACCGGCAACGCCGACGTGAAAAACTCC 120558 | |||| |||||||||||| | ||| | || ||||| || ||| | || ||| Sbjct 258584 CGCATGAGGGTCGCGTTCATGCCGATCAAGCCGACGGGCAAGGCGTCCGTCAGGAATTCC 258525 Query 120559 TTCTCAATGTCCACCGCCTCCTTGAACAT---GGCGAGCATAGTGTGGC-CGGGCATCTT 120614 | ||| || || || || || || || ||||| | ||| ||| | || || Sbjct 258524 TGCTCGATCTCGACGGCTTCGGCGATGATTTGGGCGA-CGCGGTGAGGCGCTGG--TC-G 258469 Query 120615 GTGTTCGATGCGCGTTCGGTAGTACAGGCACGCAAAGTCCGTGTGCAGGCCCTCGTCGCG 120674 | | |||| | ||| | || ||||| |||||||| ||||| ||||| |||||||| Sbjct 258468 GCGCTCGAGGTGCG---AGAAGAGGAGGCAGGCAAAGTCGGTGTGGAGGCCTTCGTCGCG 258412 Query 120675 CGATATCAGCTCGTT 120689 ||| || |||||||| Sbjct 258411 CGAGATGAGCTCGTT 258397 >seq215 Length=181685 Score = 102 bits (112), Expect = 8e-17 Identities = 119/161 (74%), Gaps = 0/161 (0%) Strand=Plus/Minus Query 133463 GGTGGACTCTTTCTGTATATTGTAATCGCCCATCGTGGACGAGTCCTCGAGCTGCTTGCC 133522 ||| ||||| ||||| || ||||| || | ||| |||||||||||||||||| Sbjct 75631 GGTCGACTCCTTCTGGATGTTGTAGTCCGAGAGGGTGCGGCCGTCCTCGAGCTGCTTGCC 75572 Query 133523 CGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTTTTGCTT 133582 ||| | ||||| ||||||||||| || |||||||| |||||||| |||||| ||| Sbjct 75571 GGCGAAGATGAGGCGCTGCTGGTCAGGGGGGATGCCCTCCTTGTCCTGGATCTTGGCCTT 75512 Query 133583 GAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGA 133623 || | || | |||||| | | ||| || |||| ||||| Sbjct 75511 GACGTTGTCGATCGTGTCCGACGACTCGACCTCGAGGGTGA 75471 >seq172 Length=285481 Score = 89.7 bits (98), Expect = 5e-13 Identities = 88/114 (77%), Gaps = 0/114 (0%) Strand=Plus/Plus Query 133463 GGTGGACTCTTTCTGTATATTGTAATCGCCCATCGTGGACGAGTCCTCGAGCTGCTTGCC 133522 ||| ||||| ||||| || ||||| || | ||| |||||||||||||||||| Sbjct 52572 GGTCGACTCCTTCTGGATGTTGTAGTCCGAAAGAGTGCGGCCGTCCTCGAGCTGCTTGCC 52631 Query 133523 CGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTT 133576 ||| | || || |||||||||||||| |||||||| |||||||| |||||| Sbjct 52632 GGCGAAGATCAGGCGCTGCTGGTCGGGGGGGATGCCCTCCTTGTCCTGGATCTT 52685 >seq49 Length=30792 Score = 84.2 bits (92), Expect = 2e-11 Identities = 99/134 (74%), Gaps = 0/134 (0%) Strand=Plus/Minus Query 133484 GTAATCGCCCATCGTGGACGAGTCCTCGAGCTGCTTGCCCGCGTAAATGAGCCGCTGCTG 133543 ||| |||| || |||| | ||||||||||||||| || ||| | || | ||||||| Sbjct 13205 GTAGTCGCGCAGCGTGCGGGCGTCCTCGAGCTGCTTCCCAGCGAAGATCAAGCGCTGCTC 13146 Query 133544 GTCGGGAGGGATGCCTTCCTTGTCGGTGATCTTTTGCTTGAGCTGCTCAACCGTGTCGGT 133603 |||||| |||||||| |||||||| |||||| ||||| | | |||||||| | Sbjct 13145 GTCGGGCGGGATGCCCTCCTTGTCCTGGATCTTGGTCTTGACGTCGTAGACCGTGTCAGA 13086 Query 133604 GGGCTCCACGTCGA 133617 |||| || |||| Sbjct 13085 CAGCTCAACCTCGA 13072 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 483419482678320