Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhodotorula_20toruloides_20[genbank_20GCA_5F000988875.1_202015-05- 06] 218 sequences; 20,361,044 total letters Query= NC_026440.1 Length=2243109 Score E Sequences producing significant alignments: (Bits) Value seq196 233 3e-55 seq165 163 4e-34 seq212 138 2e-26 seq175 118 2e-20 seq79 102 1e-15 seq200 91.5 2e-12 >seq196 Length=101194 Score = 233 bits (258), Expect = 3e-55 Identities = 225/289 (78%), Gaps = 0/289 (0%) Strand=Plus/Plus Query 259894 CATGTCGCAGCAGTTGTTCACCTCAGCGACGCCCACGCTCTTTAATGCCGGCACGCCGCG 259953 ||||||| ||| || || || ||| |||| |||||||| || ||||||||||||| Sbjct 13149 CATGTCGGAGCGGTACTTTACGCACGCGTCGCCGACGCTCTTCAACGCCGGCACGCCGCA 13208 Query 259954 CCCGCAGAATTCGTCGTGCTTTCTGTTGGACATGAAGGCCGATTCGATCGAGGGCATCTA 260013 ||||||| ||||||||||| || | ||||||| ||| ||||||||||||||||| Sbjct 13209 CCCGCAGCTCTCGTCGTGCTTCCTCGTCACGATGAAGGACGACTCGATCGAGGGCATCTA 13268 Query 260014 TGACACGCTCAAGCAGTGCGCGCTCATCTCCAAGGCGGCCGGCGGCATCGGTTTTGCCGC 260073 |||||||||||| ||||||||||||||||||| |||| ||||||||||| | | Sbjct 13269 CGACACGCTCAAGACGTGCGCGCTCATCTCCAAGACGGCAGGCGGCATCGGCCTCTCGAT 13328 Query 260074 ACACAAGGTGCGCGCCGCGGGCGCCTACGTGGCGGGCACCAACGGCCAGTCCAACGGCCT 260133 ||||| | ||||| | || | ||| | || ||||| |||||| | || |||||| | Sbjct 13329 CCACAACATCCGCGCGACCGGTTCGTACATCGCCGGCACGAACGGCTACTCGAACGGCAT 13388 Query 260134 TGTGCCCATGCTTCGCGTTTTTAACGACACGGCGCGCTACGTCGACCAG 260182 | |||||||| ||||| | ||| ||||||||||||||||||||||| Sbjct 13389 CATCCCCATGCTCCGCGTGTACAACAACACGGCGCGCTACGTCGACCAG 13437 Score = 154 bits (170), Expect = 2e-31 Identities = 370/548 (68%), Gaps = 30/548 (5%) Strand=Plus/Plus Query 262879 TGGGACTGGGACGCACTGCGGGCGTCGGTTCGACAGCATGGCCTGCGCAACTCGTTGCTC 262938 |||||||||| || || || | | || ||||| ||| | ||||||||| ||| Sbjct 14456 TGGGACTGGGCCGAGTTGAAGGAGAAGATTGCGCAGCACGGCATCCGCAACTCG---CTC 14512 Query 262939 GTG---GCGCTCATGCCCACGGCCACGACGTCGCAGATCCTGGGCAACACCGAGGCGTTC 262995 ||| |||| ||||| || ||| |||| |||||||| ||| || |||||||||| Sbjct 14513 GTGTGCGCGCCGATGCCTACCGCCTCGACCAGCCAGATCCTCGGCTTCAACGAGGCGTTC 14572 Query 262996 GAGGTCATCACGAGCAACATCTACACGCGCCGCGTGCTCTCGGGCGACTTTACCGTGGTC 263055 ||| |||| |||||||||||| |||||||| ||| | ||||| || || ||| Sbjct 14573 GAGCCGTACACGTCCAACATCTACACCCGCCGCGTCCTCGCCGGCGAGTTCCAGGTCGTC 14632 Query 263056 AACCGCCACCTGGTCAAGCG-CATGGTGGCGCGCGGCCTGTGGA-CGCC-CGACTTTCGC 263112 |||| | || || ||| | | || | ||||||||||||| || | ||| | Sbjct 14633 AACCCCTGGCTCCTCC-GCGACCTCGTCGACCGCGGCCTGTGGAACGACGCGA--TGAAG 14689 Query 263113 GACCGGCTCATTGCGGCACAG-GGCTCGGTGCAGGGCTTTGACGACGAGGAGGTGCCGCC 263171 || | |||| ||| |||| |||||| | ||| | | || | | || Sbjct 14690 AACACGATCATCGCG-CACAACGGCTCGATCCAGAACGTCCCCGGCA------TCCCCGA 14742 Query 263172 CGATCTCAAGGCTCTCTTCAAGACCGTGTGGGAGGTGCCCAACCGGGTGACCATTGATAT 263231 ||| |||||| ||| |||||||||||||||| | | | ||| ||| || | Sbjct 14743 CGAGCTCAAGCGCATCTACAAGACCGTGTGGGAGATCTCGCAAAAGGTCGTCATCGACCT 14802 Query 263232 GGCGGCCGACCGCGCGCCCTATGTCGACCAGAGCCAGTCGCTCAACCTGTACCTC----- 263286 || |||||||||| | | |||||||| |||||||||||| | ||||| Sbjct 14803 CGCCGCCGACCGCGGCGCGTTCATCGACCAGTCGCAGTCGCTCAACGTCCACCTCTCGTC 14862 Query 263287 GCCGACCCGACGGCCGAGAGCATCACGTCGATGCACGCCTATGCGTGGCGTCGCGGCCTC 263346 ||||||| | ||| || |||||||||||||| ||| | ||| || ||| Sbjct 14863 GCCGACC--ATGGCGCAGC---TCACGTCGATGCACTTCTACGGATGGAAGAAAGGTCTC 14917 Query 263347 AAGACTGGCATGTACTATCTGCGCACCCGGCCCGCTGCCAACGCCATTCAATTCACCGTC 263406 ||||| ||||||||||| || |||||||| | || | | |||||| | ||||||||| Sbjct 14918 AAGACGGGCATGTACTACCTCCGCACCCGCGCTGCCGTCGGCGCCATCAAGTTCACCGTC 14977 Query 263407 GATCAGGC 263414 || ||||| Sbjct 14978 GACCAGGC 14985 Score = 125 bits (138), Expect = 1e-22 Identities = 256/383 (67%), Gaps = 16/383 (4%) Strand=Plus/Plus Query 261788 GGCGGCGGCAAGCGCAAGGGCGCCTTTGCCTGCTACCTGGAACCGTGGCACGCCGACCTC 261847 || ||| ||||||| |||||| || ||| |||||| || ||||||||||||||| || Sbjct 13438 GGAGGCAACAAGCGCCCGGGCGCGTTCGCCATCTACCTCGAGCCGTGGCACGCCGACATC 13497 Query 261848 ATCAACTGGCTGGACCTCAAAAAGAACCACGGCAAGGGAGGGGGAGAACCGGGCGCGCGC 261907 || | | || |||||| ||||||||||||| ||| |||| || |||||||| Sbjct 13498 TTCGAGTTCCTCGACCTCCGCAAGAACCACGGCA----AGGAGGAGGTCC--GCGCGCGC 13551 Query 261908 GATCTCTTTTACGGCCTGTGGACGTGCGACCTGTTTATGCGCCGCATGGTGACCGG--CC 261965 || | || | | ||| |||| |||||| || || | || || || | | | Sbjct 13552 GACTTGTTCTTTGCCCTTTGGATCCCCGACCTCTTCAT--GGAGCGTGTCGAGCAGAACG 13609 Query 261966 GCGACTGGTCGCTCTTTTGCCCGTCCGAGGCGCCCGGCCTGCACGAATGCTATGGCGCGG 262025 |||||||| | ||||| |||||| ||||||||||||| || ||||| ||| |||| | Sbjct 13610 GCGACTGGCCCCTCTTCTGCCCGGCCGAGGCGCCCGGTCTCCACGAGGTCTACGGCGACG 13669 Query 262026 CCTTTGACGCCCTCTATG---AGNNNNNNNNNNNNNNNNNNNNNNCGCGGACCGTCGTGC 262082 || | | |||| || || ||| ||| || | Sbjct 13670 AGTTCAAGGAGCTCTTTGAAAAGTACGAGAAGGAGGGTCGCGCCAAGCGCACCATC---C 13726 Query 262083 CCGCACGACAGATCTGGTCGGCCATTGTCGCGGCCCATATCGAGACCGGCACGCCCTACA 262142 |||| | || |||||| ||| | ||| |||||| ||||||| |||| |||| || Sbjct 13727 CCGCCCAGAAGCTCTGGTACGCCGTCCTCGAGGCCCAGGTCGAGACGGGCAACCCCTTCA 13786 Query 262143 TGGTCTACAAGGACGCCGTCAAC 262165 || |||||||||| |||| |||| Sbjct 13787 TGCTCTACAAGGATGCCGCCAAC 13809 >seq165 Length=391853 Score = 163 bits (180), Expect = 4e-34 Identities = 213/287 (74%), Gaps = 7/287 (2%) Strand=Plus/Minus Query 1456447 AGGTTTGCACTGTGACTTTGCCTGTCTGCTCTACACGATGCTCGTCAACAAGCCGTCGAC 1456506 |||| | ||| ||||||||||| || |||| | || |||| | ||| || | Sbjct 47997 AGGTCTCCACACCGACTTTGCCTGCCTCCTCTTCTCGCACCTCGAGCGCC-GCCCTCACC 47939 Query 1456507 C-GACGTGCCCAAGCAGATCATCGTCGAGGCCGTCGAGATCGAGAAAGAGTTTGTCAGCG 1456565 | ||| | | ||| |||||| |||||| |||||||||||| ||||||| ||| | Sbjct 47938 CCGACACGGTCGAGCGCATCATCCGCGAGGCGGTCGAGATCGAGCAAGAGTTCCTCACGG 47879 Query 1456566 AGTCGCTGCCGGTGGCGCTCATCGGCATGAAC-GCCACCGCTCATGTGCCAGTACATTGA 1456624 || ||||||| || |||||||||||||||| || || ||||||||||||||||| | Sbjct 47878 AGGCGCTGCCCGTCAAGCTCATCGGCATGAACAGCGAC--CTCATGTGCCAGTACATCG- 47822 Query 1456625 ATTTTGTCGCCGACCGCCTGCTCGCGGCGCTCGGCTGCGGAGAAGCACTACCGGACGGCC 1456684 | ||||| ||||||||| |||| | || || ||| | |||||| ||||| | || Sbjct 47821 AGTTTGTTGCCGACCGCTTGCTTGTCGCACTTGGCAAC-GAGAAGATCTACCACAAGGAG 47763 Query 1456685 AACCCGTTCCCATGGATGGAGTTGATCTCGCTCGAGGGCAAGACCAA 1456731 ||||||||| | |||||| |||||||| | |||||||||||||| Sbjct 47762 AACCCGTTCGACTTCATGGAGATGATCTCGATGGAGGGCAAGACCAA 47716 Score = 105 bits (116), Expect = 1e-16 Identities = 120/156 (77%), Gaps = 5/156 (3%) Strand=Plus/Minus Query 1456122 GAAAAAGGCCGACTGGGCGATGAAGTGGATCAACAAGGAGGGCCTCGACACTTTGCCGAG 1456181 ||| |||||||| |||||| | | |||||| | || || || | || | |||| Sbjct 48280 GAAGAAGGCCGAGTGGGCGCTCACCTGGATCTCGGACGACCGCTCCGTC--TTCGGCGAG 48223 Query 1456182 CGGCTCGTCGGCTTTGCCGC-GTCGAGGGCATCTTTTTCTCGGGCAGTTTCTGCG-CCAT 1456239 || ||||||| || ||||| |||||||||||||| ||||| ||| ||| ||| |||| Sbjct 48222 CGTCTCGTCGCGTTCGCCGCCGTCGAGGGCATCTTCTTCTCCGGCTCGTTC-GCGTCCAT 48164 Query 1456240 CTTTTGGCTCAAGAAGCGCGGCCTCATGCCCGGTCT 1456275 ||| |||||||||||||||||| | |||||||| || Sbjct 48163 CTTCTGGCTCAAGAAGCGCGGCTTGATGCCCGGACT 48128 >seq212 Length=170411 Score = 138 bits (152), Expect = 2e-26 Identities = 250/359 (70%), Gaps = 15/359 (4%) Strand=Plus/Plus Query 1601131 CGAGCGGAAGCCGCCGCGGTCGACAAAGTCCTGCTTGAGCACGAGCGAGTCCTCCTGGTT 1601190 ||||||||| ||||||||||| || ||| || | | || ||| ||||||||||| Sbjct 60411 CGAGCGGAACAGGCCGCGGTCGATCGAGGACTGGTTCATGATGACCGAATCCTCCTGGTT 60470 Query 1601191 GTAG---GGGTCGCTCATGATGGCCACGCGCGCATTCTGGCCCATCGGGAGGCGCGTGGC 1601247 |||| | || || || |||||| ||| || ||||| || |||| || || || Sbjct 60471 GTAGCCGGAGTAGCACAGGATGGCGACGATGGCGTTCTGTCCGG-CGGGCAGCTCGCGGA 60529 Query 1601248 GCCGATGACGTCCTCCATGGCG---GTCTGCACCAGCGGCACCTGCGGGTAGCACAGGGC 1601304 | || || |||||| | | ||| | | || ||| ||||||||| | ||| Sbjct 60530 AGTG--GAGGTACTCCATCGAGCGCGTCGTCGCGAGGGGCTTTTGCGGGTAGTAGAGGAT 60587 Query 1601305 GTGCGACACCGTGTCGATGG---CATGGTCGGCGTTGAGCGACACGACGGCCTTGCTCTG 1601361 || | || |||||| ||| | |||| | | |||| | || | | | || ||| Sbjct 60588 GTTGGCCATCGTGTCCATGCGGACCTGGTAGTTGGTGAGGTAGACACC--CATAGC-CTG 60644 Query 1601362 CTTGCCCATGGCCGTCTGGTAGATGTTGCGCGGCGCCTGGTTGTGGTTGGAAAACGGGAT 1601421 |||||||||||| | ||||||| |||||||||| | ||||||||||| || || ||||| Sbjct 60645 CTTGCCCATGGCAGACTGGTAGGTGTTGCGCGGGGACTGGTTGTGGTCGGGGAAGGGGAT 60704 Query 1601422 GATGGACGCGCAGGCGCCCAGCATGAGCAGCGGGTGGACCTCGACGTGCGTAAAGGGCT 1601480 ||||||||||||| ||| || || | ||||||| |||| |||||| ||| || Sbjct 60705 GATGGACGCGCAGATGCCGAGGATCATGGAAGGGTGGATCTCGCAGTGCGTCCAGGTCT 60763 >seq175 Length=283523 Score = 118 bits (130), Expect = 2e-20 Identities = 199/278 (72%), Gaps = 15/278 (5%) Strand=Plus/Plus Query 1456460 GACTTTGCCTGTCTGCTCTACACGATGCTCGT----CAACAAGC-CGTCGACCGACGT-G 1456513 ||||||||||| || |||| | || |||| | || ||| | || |||| ||| | Sbjct 258433 GACTTTGCCTGCCTCCTCTTCTCGCACCTCGAGCGCCGACCAGCGCCTC-ACCG-CGTCG 258490 Query 1456514 CCCAAGCAGATCATCGTCGAGGCCGTCGAGATCGAGAAAGAGTTTGTCAGCGAGTCGCTG 1456573 ||||| ||||||| ||| ||||||||||||||| | || || | | || | || Sbjct 258491 CCCAA----ATCATCGCCGAAGCCGTCGAGATCGAGCAGGAATTCCTGACGGACGCCTTG 258546 Query 1456574 CCGGTGGCGCTCATCGGCATGAACGCCACCGCTCATGTGCCAGTACATTGAATTTTGTCG 1456633 || || | | |||||||||||||| ||| |||||| | |||||||| | | || |||| Sbjct 258547 CCCGTCGGCTTGATCGGCATGAACGCGACC-CTCATGCGACAGTACATCG-AGTTCGTCG 258604 Query 1456634 CCGACCGCCTGCTCGCGGCGCTCGGCTGCGGAGAAGCACTACCGGACGGCCAACCCGTTC 1456693 | ||||| |||| | ||||| || | ||||||| ||| | | ||||||||| Sbjct 258605 CGGACCGATTGCTTGTCGCGCTTGGGAAC-GAGAAGCTGTACAATGCCGAGAACCCGTTC 258663 Query 1456694 CCATGGATGGAGTTGATCTCGCTCGAGGGCAAGACCAA 1456731 | |||||| |||||||| | |||||||||||||| Sbjct 258664 GACTTTATGGAGATGATCTCGATGGAGGGCAAGACCAA 258701 >seq79 Length=666268 Score = 102 bits (112), Expect = 1e-15 Identities = 192/281 (68%), Gaps = 1/281 (0%) Strand=Plus/Minus Query 1817497 CCGATGATGGGCTTGTTGGCCTGCGGCGACACGGTCTTGAGGGCCACGTTCATGGTGTGC 1817556 || |||| ||||||||||||||||||||| | | || | || ||| | ||| Sbjct 550992 CCCATGACGGGCTTGTTGGCCTGCGGCGAGATAATGTTTCGCGCGACGGCGGCGATGTTG 550933 Query 1817557 GTCACCTCGGCGCGCGCGTC-TCAGACTGGGGCACATGGAGGTTCATCTCGTCGCCGTCA 1817615 ||| ||| | || | || || ||||| || || || | ||||||||||||||||||| Sbjct 550932 ATCAGCTCCGACCGAGTCTCCTCTGACTGCGGGACGTGCAAGTTCATCTCGTCGCCGTCA 550873 Query 1817616 AAGTCGGCATTGTAGGTGCCCGTGACGGCCAGGTTGAACCGCATGGTACGGCCGGGCATG 1817675 |||||||| ||||| | ||||| | ||||||| || | ||| | |||||| Sbjct 550872 AAGTCGGCGTTGTACGGCGAGGTGACAGAGAGGTTGAGGCGGAAGGTCGAGTACGGCATG 550813 Query 1817676 GGCACCACCTTGTGCATGAGCATGGAGCCCATGTGGAGTGAGGGCTGCCGGTTCATCACC 1817735 || || |||| | ||| || | |||| | || ||||||||||| | || Sbjct 550812 AGCTTGACGCGGTGCGCCATCATCGACATCTTGTGCAACGACGGCTGCCGGTTGAACAGG 550753 Query 1817736 ACGGCGTCGCCGGCGCGCAGGTGACGCTCGACTGTCCACCC 1817776 ||| ||||||| | ||||| |||||||| |||| || Sbjct 550752 ACGATGTCGCCGTCCTTGAGGTGTCGCTCGACAATCCAGCC 550712 >seq200 Length=244404 Score = 91.5 bits (100), Expect = 2e-12 Identities = 127/178 (71%), Gaps = 0/178 (0%) Strand=Plus/Minus Query 332876 CGCAGGATGGCACAACGGCTCTGCAGGGCCTCGATGACCATTGACGACGTGTTGCAGGCC 332935 |||| || || || || || || | | |||||| | | | |||| |||||| ||| Sbjct 117094 CGCAAAATCGCGCACCGACTTTGAATCGGCTCGATAATCTTGTTCGACTGGTTGCAAGCC 117035 Query 332936 AGGGCAAACCGCGTCGTATTGGTATGCTTTTCCATGGTCGACCGGAGGGCCTGTTGGGCC 332995 || || ||||||||||| ||| | | ||||| || |||||||| ||||| || Sbjct 117034 AGCGCGAACCGCGTCGTGTTGCTGTAGAGCTCCATCGTGCGGCGGAGGGCTTGTTGTGCG 116975 Query 332996 GCCGGCGTGAGGCAGTCGGCCTCGTCGAGGATGATGATCTTGTGGCGCCCGTGCGGCA 333053 | | ||| | ||||||| |||||||||||||||| ||||||||| || | |||| Sbjct 116974 CCAGTCGTCATCGAGTCGGCTTCGTCGAGGATGATGAGCTTGTGGCGGCCAAGAGGCA 116917 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 7177790173499316