Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Rhodotorula_20toruloides_20[genbank_20GCA_5F000988875.1_202015-05-
06] 218 sequences; 20,361,044 total letters
Query= NC_026922.1
Length=157977
Score E
Sequences producing significant alignments: (Bits) Value
seq207 127 2e-24
seq196 125 7e-24
seq215 91.5 1e-13
seq172 89.7 5e-13
>seq207
Length=219063
Score = 127 bits (140), Expect = 2e-24
Identities = 156/213 (73%), Gaps = 0/213 (0%)
Strand=Plus/Minus
Query 134501 CAACACGAGGTGTAGCGTGGATTCCTTTTGAATGTTGTAGTCGCCAACGGTGTGAGAGTC 134560
|||||| || || || || || ||||| || ||||||||||||| | ||| || |||
Sbjct 76599 CAACACCAGATGGAGTGTAGACTCCTTCTGGATGTTGTAGTCGCTGAGCGTGCGACCGTC 76540
Query 134561 GTCGAGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGGTATGCCTTCTTTTTC 134620
|| ||||| ||||| || || ||||| |||||||| ||||| || || || || || ||
Sbjct 76539 CTCAAGCTGCTTGCCCGCGAAGATCAAGCGCTGCTGGTCGGGAGGGATTCCCTCCTTGTC 76480
Query 134621 TTGAATTTTTTGTTTGACCGCGTCCAATGTGTCGGACGATTCCACGTCGAGAGTAATGGT 134680
||||| || ||||| ||| | ||||| || || || || ||||| || |||||
Sbjct 76479 CTGAATCTTGGCCTTGACGTTGTCGATGGTGTCCGAAGACTCGACCTCGAGGGTGATGGT 76420
Query 134681 TTTACCGGTTAAAGTTTTAACGAAAATTTGCAT 134713
|| ||||| | || || ||||| || |||||
Sbjct 76419 CTTGCCGGTGAGGGTCTTGACGAAGATCTGCAT 76387
Score = 102 bits (112), Expect = 8e-17
Identities = 137/191 (72%), Gaps = 0/191 (0%)
Strand=Plus/Minus
Query 134487 CCTCCTCTGAGTCGCAACACGAGGTGTAGCGTGGATTCCTTTTGAATGTTGTAGTCGCCA 134546
||||| | ||| |||| ||||||||| || || || || || || || || || || |
Sbjct 76908 CCTCCGCGGAGACGCAGCACGAGGTGGAGGGTCGACTCTTTCTGGATATTATAATCCGAA 76849
Query 134547 ACGGTGTGAGAGTCGTCGAGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGGT 134606
| || || ||| |||||||| || || || || ||||| ||||| || ||||| ||
Sbjct 76848 AGAGTACGACCGTCCTCGAGCTGCTTCCCCGCGAAGATCAAGCGCTGTTGGTCGGGAGGG 76789
Query 134607 ATGCCTTCTTTTTCTTGAATTTTTTGTTTGACCGCGTCCAATGTGTCGGACGATTCCACG 134666
|| || || || || ||||| || ||||| ||| | ||||||||||| || ||
Sbjct 76788 ATTCCCTCCTTATCCTGAATCTTGGCCTTGACGTTGTCGATGGTGTCGGACGACTCGACC 76729
Query 134667 TCGAGAGTAAT 134677
|||||||| ||
Sbjct 76728 TCGAGAGTGAT 76718
>seq196
Length=101194
Score = 125 bits (138), Expect = 7e-24
Identities = 288/425 (68%), Gaps = 9/425 (2%)
Strand=Plus/Plus
Query 7564 CAACACATGCTGTTGCGCGTGGCGGTGGGCATTCACGGCGAAGACATTGACGCCGCCTTG 7623
|| |||||||| ||||||| ||||| ||||| |||||||| ||||||||| ||| |
Sbjct 13075 CAGCACATGCTCATGCGCGTCGCGGTCGGCATCCACGGCGACGACATTGACCGCGCGATC 13134
Query 7624 GAAACGTACCAAATGATGTCTTTGAAACAGTTTACGCACGCTTCGCCCACCATGTTTGCC 7683
|| |||||| | | ||||| | | ||||||||||| ||||| || | || |
Sbjct 13135 GAGACGTACAACCTCATGTCGGAGCGGTACTTTACGCACGCGTCGCCGACGCTCTTCAAC 13194
Query 7684 GCGGGCACAAACGC-GCCTCAATTGTCCTCGTGTTTTTTGCTAACCATGCGCGAAGACAG 7742
|| ||||| ||| || || | || ||||| || | | || ||| || |||
Sbjct 13195 GCCGGCAC-GCCGCACCCGCAGCTCTCGTCGTGCTTCCTCGTCACGATGAAGGACGACTC 13253
Query 7743 CATCGACGGCATTTACAACACGCTGCGCGA-TTGCGCCAATATTTCCAAATACGGC-GGC 7800
||||| ||||| ||| ||||||| | || ||||| || ||| || ||||| |||
Sbjct 13254 GATCGAGGGCATCTACGACACGCT-CAAGACGTGCGCGCTCATCTCC-AAGACGGCAGGC 13311
Query 7801 GGAATAGGTCTGAACGTAAACGACGTGCGCGCCAACGGTAGCCGCATCGTGTCCACCAAC 7860
|| || || || | || || | ||||| | |||| ||||| ||| |||
Sbjct 13312 GGCATCGGCCTCTCGATCCACAACATCCGCGCGACCGGTTCGTACATCGCCGGCACGAAC 13371
Query 7861 GGAAAAGCCAGCGGTTTAGAGCCCATGTTGCGCGTGTTCAATAACGCGGTGCGACATGTA 7920
|| | | | ||| | |||||| | ||||||| ||| ||| ||| ||| | ||
Sbjct 13372 GGCTACTCGAACGGCATCATCCCCATGCTCCGCGTGTACAACAACACGGCGCGCTACGTC 13431
Query 7921 GACCAGGGGGG---AAAGCGCAAAGGCGCCGCTGCCATCTATTTGGAGCCGTGGCACGCG 7977
|||||||| || |||||| ||||| |||||||| | ||||||||||||||
Sbjct 13432 GACCAGGGAGGCAACAAGCGCCCGGGCGCGTTCGCCATCTACCTCGAGCCGTGGCACGCC 13491
Query 7978 GACAT 7982
|||||
Sbjct 13492 GACAT 13496
>seq215
Length=181685
Score = 91.5 bits (100), Expect = 1e-13
Identities = 124/173 (72%), Gaps = 0/173 (0%)
Strand=Plus/Minus
Query 134505 ACGAGGTGTAGCGTGGATTCCTTTTGAATGTTGTAGTCGCCAACGGTGTGAGAGTCGTCG 134564
|||||||| || || || ||||| || ||||||||||| | |||| | ||| |||
Sbjct 75642 ACGAGGTGAAGGGTCGACTCCTTCTGGATGTTGTAGTCCGAGAGGGTGCGGCCGTCCTCG 75583
Query 134565 AGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGGTATGCCTTCTTTTTCTTGA 134624
||||| ||||| || || || | |||||||| || || || ||||| || || || ||
Sbjct 75582 AGCTGCTTGCCGGCGAAGATGAGGCGCTGCTGGTCAGGGGGGATGCCCTCCTTGTCCTGG 75523
Query 134625 ATTTTTTGTTTGACCGCGTCCAATGTGTCGGACGATTCCACGTCGAGAGTAAT 134677
|| || ||||| ||| | ||||| ||||| || || ||||| || ||
Sbjct 75522 ATCTTGGCCTTGACGTTGTCGATCGTGTCCGACGACTCGACCTCGAGGGTGAT 75470
>seq172
Length=285481
Score = 89.7 bits (98), Expect = 5e-13
Identities = 109/149 (73%), Gaps = 0/149 (0%)
Strand=Plus/Plus
Query 134481 GCCTTTCCTCCTCTGAGTCGCAACACGAGGTGTAGCGTGGATTCCTTTTGAATGTTGTAG 134540
||| | || || | ||| || | |||||||| || || || ||||| || |||||||||
Sbjct 52537 GCCATGCCGCCGCGGAGACGGAGGACGAGGTGGAGGGTCGACTCCTTCTGGATGTTGTAG 52596
Query 134541 TCGCCAACGGTGTGAGAGTCGTCGAGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCG 134600
|| || ||| | ||| |||||||| ||||| || || |||| |||||||| |||
Sbjct 52597 TCCGAAAGAGTGCGGCCGTCCTCGAGCTGCTTGCCGGCGAAGATCAGGCGCTGCTGGTCG 52656
Query 134601 GGCGGTATGCCTTCTTTTTCTTGAATTTT 134629
|| || ||||| || || || || || ||
Sbjct 52657 GGGGGGATGCCCTCCTTGTCCTGGATCTT 52685
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 505397022789360
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |