Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Rhodotorula_20toruloides_20[genbank_20GCA_5F000988875.1_202015-05-
06] 218 sequences; 20,361,044 total letters
Query= NC_028092.1
Length=193301
Score E
Sequences producing significant alignments: (Bits) Value
seq196 183 4e-41
seq138 89.7 6e-13
seq209 87.8 2e-12
>seq196
Length=101194
Score = 183 bits (202), Expect = 4e-41
Identities = 488/736 (66%), Gaps = 11/736 (1%)
Strand=Plus/Minus
Query 118830 GCATCCTTGTAAAGCATGTATGGCGTCCCCGTCTCCGTTTGGGACTTGAGAATAGCCTTC 118889
||||||||||| |||||| | || | |||||||| |||| || ||| | || | |
Sbjct 13802 GCATCCTTGTAGAGCATGAAGGGGTTGCCCGTCTCGACCTGGGCCTCGAGGACGGCGTAC 13743
Query 118890 CAGA-CATCGGCAGCTGGCACAGTGGCGTTGGCTCGCCCCTCTTCCTCGTACTTTGTGTA 118948
|||| | || | || || | ||| ||||| || ||||| | |||||||||| |
Sbjct 13742 CAGAGCTTCTGG-GCGGGGATGGTGCGCTTGGCGCGACCCTCCTTCTCGTACTTTTCAAA 13684
Query 118949 GAGGGCTTCAAACTCTTCACCCACGGCCTCTGAGAGCCCTGGTGCCTTATCTGGGCAGAA 119008
||| | | ||||| || || | |||| ||| || || |||| | ||||||||
Sbjct 13683 GAGCTCCTTGAACTCGTCGCCGTAGACCTCGTGGAGACCGGGCGCCTCGGCCGGGCAGAA 13624
Query 119009 GAGAGACCATTGACCACCCTCCTCAACCCGCTTCATGAAGAGGTCTGGGATCCAGAGCGC 119068
||| | ||| | || || ||| || |||| |||||||||||| |||||||| || ||
Sbjct 13623 GAGGGGCCAGTCGCCGTTCTGCTCGACACGCTCCATGAAGAGGTCGGGGATCCAAAGGGC 13564
Query 119069 CGAGAAGAGATCCCGACAGCGAGCTTCTTCATCCCCCTGATTGAGACGCAACTCCAAAAA 119128
|||| | || || ||| | || || | || || || || | || | ||
Sbjct 13563 AAAGAACAAGTCGCGCGCGCGGACCTCCTCCTTGCCGTGGTTCTTGCGGAGGTCGAGGAA 13504
Query 119129 GTCCATGATATCCGCGTGCCACGGTTCCAGGTACACCGCGATTGACCCCTTACGACGA-- 119186
|| | ||| || ||||||||||| || ||||| | |||| | ||| ||
Sbjct 13503 CTCGAAGATGTCGGCGTGCCACGGCTCGAGGTAGATGGCGAACGCGCCCGGGCGCTTGTT 13444
Query 119187 -CCAGCCTGGTTTACATACCTCGCAGTGGCGTTAAATACACGAAGCATTGGAATGATACC 119245
|| |||||| || || | ||| ||| ||| | || || ||||| || ||||| ||
Sbjct 13443 GCCTCCCTGGTCGACGTAGCGCGCCGTGTTGTTGTACACGCGGAGCATGGGGATGATGCC 13384
Query 119246 ATCGGATTGGCCATTTGTCCCC-CGAA-TACGAGACTTATTGGCTCTGACATCGTGGATG 119303
| || | ||| || || || ||| ||||| | | || | || | ||||||
Sbjct 13383 GTTCGAGTAGCCGTTCGTGCCGGCGATGTACGAACCGG--TCGCGCGGATGTTGTGGATC 13326
Query 119304 TGCATACCAATACCCCCTGCCCACTTTGAGATTTGCGCGCACTCCGTGAGACTGCCGTAG 119363
| || || || |||||| ||| ||||| |||||||| | |||| || |||||
Sbjct 13325 GAGAGGCCGATGCCGCCTGCCGTCTTGGAGATGAGCGCGCACGTCTTGAGCGTGTCGTAG 13266
Query 119364 ATCCCATCGATCGAGTCACCCTTATTTGCGATGAGGAAGCAGCTCGACATTTGAGGCCTG 119423
|| || ||||||||||| |||| | | || ||||||||| ||| | || ||
Sbjct 13265 ATGCCCTCGATCGAGTCGTCCTTCATCGTGACGAGGAAGCACGACGAGAGCTGCGGGTGC 13206
Query 119424 GGTGTACCAGCGTTGAAGAGAGTTGGTGTCGCGTGGATGAACATACC-TTGGGACATCTT 119482
|| || || ||||||||||| || || | |||||| | || |||| | |||||
Sbjct 13205 GGCGTGCCGGCGTTGAAGAGCGTCGGCGACGCGTGCGT-AAAGTACCGCTCCGACATGAG 13147
Query 119483 GTCGTAGGTCTCCAAGACGGCGGGAATGTCTTCCCCGTGAATACCGATCGAGACCCGCAT 119542
|| ||| ||||| | || | |||||| || ||||| || |||| || ||| |||||
Sbjct 13146 GTTGTACGTCTCGATCGCGCGGTCAATGTCGTCGCCGTGGATGCCGACCGCGACGCGCAT 13087
Query 119543 AAACATGTATTGGGGT 119558
| ||||| || |||
Sbjct 13086 GAGCATGTGCTGCGGT 13071
>seq138
Length=346568
Score = 89.7 bits (98), Expect = 6e-13
Identities = 187/276 (68%), Gaps = 2/276 (1%)
Strand=Plus/Plus
Query 14233 CTTACCGACGGCGTCAATTTCATCGATGAAAACGATACATGGTTGATT-TTCACGGGCAA 14291
||| |||| |||||||| || |||||||| | ||| || || || ||| || |
Sbjct 199270 CTTTCCGATCGCGTCAATCTCGTCGATGAAGATGATGCACGGCGCGTTCTTCTTGGCCTG 199329
Query 14292 CTTCAAAGATATCTCGCACTCTCTTGGCACCGACACCCACAAACATCTCCACAAAATTGG 14351
| ||| | || || || | ||||||||||||| || |||||||| || || | ||
Sbjct 199330 GGTGAAA-AGGTCGCGGACACGACTGGCACCGACACCGACGAACATCTCGACGAACTCGG 199388
Query 14352 CGGCGGAACATTGGATGAAGGGGACGTTAGATTCACCCGCGATGGCTCGGGCGAGGAGGG 14411
| |||| || |||||||||| | ||| || ||| | ||| ||||||||| |
Sbjct 199389 AGCCGGAGACGGAGAGGAAGGGGACGCCGGCTTCGCCTGCGGTCGCTTTGGCGAGGAGCG 199448
Query 14412 TCTTCCCCGTCCCTGGTTTCCCTGCGAGAAGGGCACCACGTGGGATCCTGGCACCACTGC 14471
|||| || || || || || | ||| | ||| || || |||||| ||||||| ||
Sbjct 199449 TCTTGCCGGTACCGGGAGGGCCGGAGAGGATGGCGCCGCGAGGGATCTTGGCACCGAGGC 199508
Query 14472 CAAAGTAGCGTTCAGGTTGTTTAAGGAAGTCCACGA 14507
|||| |||| || | || ||||| | ||||
Sbjct 199509 GCTCGTAGTGTTCGGGGTTCTTGAGGAACTTGACGA 199544
>seq209
Length=45766
Score = 87.8 bits (96), Expect = 2e-12
Identities = 102/138 (74%), Gaps = 0/138 (0%)
Strand=Plus/Plus
Query 12072 GGGAACCTCAACGCCGAGAGGGACTGGGGACATGCCAAGGACTATGTTGAAGCCATGTGG 12131
|| |||||| |||| || | ||||||||||| || ||||| || || | |||||||
Sbjct 20570 GGTAACCTCGACGCGAAGCGCGACTGGGGACACGCTCGTGACTACGTCGAGGGCATGTGG 20629
Query 12132 CTCGTACTTCAACAAGAAGAGGCGGACGAATATGTCGTCGCGACGGGGGAGACACACTCC 12191
| | | || || || || || | ||||| | |||| ||||||| || ||||| ||| ||
Sbjct 20630 CGCATGCTCCAGCAGGACCAGCCCGACGACTTTGTCCTCGCGACTGGCGAGACCCACCCC 20689
Query 12192 GTCAGGGAGTTCGTTGAG 12209
||| | ||||| || |||
Sbjct 20690 GTCCGCGAGTTTGTCGAG 20707
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 618433514764080
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |