Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhodotorula_20toruloides_20[genbank_20GCA_5F000988875.1_202015-05- 06] 218 sequences; 20,361,044 total letters Query= NC_028491.1 Length=98392 Score E Sequences producing significant alignments: (Bits) Value seq207 87.8 1e-12 seq165 84.2 1e-11 >seq207 Length=219063 Score = 87.8 bits (96), Expect = 1e-12 Identities = 105/143 (73%), Gaps = 0/143 (0%) Strand=Plus/Minus Query 34480 CCGCCTCTAAGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAA 34539 || || | |||||| | ||||| || || || ||| || || ||||| ||||||||| Sbjct 77340 CCACCGCGAAGACGAAGCACCAGGTGCAGCGTAGACTCTTTCTGGATGTTGTAATCTGAA 77281 Query 34540 AGTGTTCGCTCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGC 34599 || || || |||| ||||| || || || || || || || ||||| ||||| || || Sbjct 77280 AGCGTGCGTCCGTCCTCAAGCTGCTTCCCCGCGAAGATCAAGCGCTGCTGGTCGGGAGGG 77221 Query 34600 ACTCCCTCCTTGTCTGTGATCTT 34622 | ||||||||||| |||||| Sbjct 77220 ATACCCTCCTTGTCCTGGATCTT 77198 Score = 82.4 bits (90), Expect = 5e-11 Identities = 93/125 (74%), Gaps = 0/125 (0%) Strand=Plus/Minus Query 34489 AGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAAAGTGTTCGC 34548 ||||||| ||| | ||||| || ||| || || || |||||||| ||||| || || Sbjct 76899 AGACGCAGCACGAGGTGGAGGGTCGACTCTTTCTGGATATTATAATCCGAAAGAGTACGA 76840 Query 34549 TCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGCACTCCCTCC 34608 |||| || || || || || || || || || ||||||||||| || || | ||||||| Sbjct 76839 CCGTCCTCGAGCTGCTTCCCCGCGAAGATCAAGCGCTGTTGGTCGGGAGGGATTCCCTCC 76780 Query 34609 TTGTC 34613 || || Sbjct 76779 TTATC 76775 >seq165 Length=391853 Score = 84.2 bits (92), Expect = 1e-11 Identities = 99/134 (74%), Gaps = 0/134 (0%) Strand=Plus/Minus Query 34489 AGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAAAGTGTTCGC 34548 ||||||| ||| | ||||| || ||| || || ||||| ||||| ||||| || || Sbjct 99927 AGACGCAGCACGAGGTGGAGGGTCGACTCTTTCTGGATGTTGTAATCCGAAAGAGTACGA 99868 Query 34549 TCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGCACTCCCTCC 34608 |||| || || || || || || || || | |||||| ||||| || || | ||||||| Sbjct 99867 CCGTCCTCGAGCTGCTTCCCCGCGAAGATAAGACGCTGCTGGTCGGGAGGGATTCCCTCC 99808 Query 34609 TTGTCTGTGATCTT 34622 ||||| |||||| Sbjct 99807 TTGTCCTGGATCTT 99794 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 314728763802794