Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhodotorula_20toruloides_20[genbank_20GCA_5F001255795.1_202015-07- 26] 30 sequences; 20,810,536 total letters Query= NC_000852.5 Length=330611 Score E Sequences producing significant alignments: (Bits) Value seq15 111 3e-19 seq17 104 5e-17 seq14 104 5e-17 seq11 104 5e-17 seq1 104 5e-17 seq5 87.8 4e-12 >seq15 Length=702288 Score = 111 bits (122), Expect = 3e-19 Identities = 152/210 (72%), Gaps = 2/210 (1%) Strand=Plus/Plus Query 230383 CAAATCATTACAGAAGCAGTTGAAAACGAAAAGGAGTTCATTTGTGACGCTATTCCATGT 230442 |||||||| | ||||| || || | ||| |||| ||| | ||||| | || || Sbjct 258485 CAAATCATCGCCGAAGCCGTCGAGATCGAGCAGGAATTCCTGACGGACGCCTTGCCC-GT 258543 Query 230443 CGCCTT-ATTGGCATGAACGCTGAACTTATGGGACAGTACATCGAATTCGTAGCCGACCG 230501 || ||| || ||||||||||| || ||| ||||||||||||| ||||| || ||||| Sbjct 258544 CGGCTTGATCGGCATGAACGCGACCCTCATGCGACAGTACATCGAGTTCGTCGCGGACCG 258603 Query 230502 CATTTTTGTTGCACTTGGTTACGAGAAAGTGTACAACTCTAAGAACCCCTTTGCATTTAT 230561 | |||| || ||||| ||||||| ||||||| | ||||||| || | ||||| Sbjct 258604 ATTGCTTGTCGCGCTTGGGAACGAGAAGCTGTACAATGCCGAGAACCCGTTCGACTTTAT 258663 Query 230562 GGAGCTCATTTCGCTTCAAGGGAAGACCAA 230591 |||| | || ||| | | || |||||||| Sbjct 258664 GGAGATGATCTCGATGGAGGGCAAGACCAA 258693 >seq17 Length=587597 Score = 104 bits (114), Expect = 5e-17 Identities = 66/72 (92%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 165710 GCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAGC 165769 ||||| |||||||||||||||||| ||||||| |||||||||||||||||||||||||| Sbjct 140166 GCCCGGTTAGCTCAGTCGGTAGAGCACCAGACTCTTAATCTGGTGGTCGTGGGTTCGAGC 140225 Query 165770 CCCACGATGGGC 165781 ||||| ||||| Sbjct 140226 CCCACATTGGGC 140237 >seq14 Length=779201 Score = 104 bits (114), Expect = 5e-17 Identities = 66/72 (92%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 165710 GCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAGC 165769 ||||| |||||||||||||||||| ||||||| |||||||||||||||||||||||||| Sbjct 505063 GCCCGGTTAGCTCAGTCGGTAGAGCACCAGACTCTTAATCTGGTGGTCGTGGGTTCGAGC 505122 Query 165770 CCCACGATGGGC 165781 ||||| ||||| Sbjct 505123 CCCACATTGGGC 505134 >seq11 Length=938730 Score = 104 bits (114), Expect = 5e-17 Identities = 66/72 (92%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 165710 GCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAGC 165769 ||||| |||||||||||||||||| ||||||| |||||||||||||||||||||||||| Sbjct 496658 GCCCGGTTAGCTCAGTCGGTAGAGCACCAGACTCTTAATCTGGTGGTCGTGGGTTCGAGC 496717 Query 165770 CCCACGATGGGC 165781 ||||| ||||| Sbjct 496718 CCCACATTGGGC 496729 >seq1 Length=2216040 Score = 104 bits (114), Expect = 5e-17 Identities = 66/72 (92%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 165710 GCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAGC 165769 ||||| |||||||||||||||||| ||||||| |||||||||||||||||||||||||| Sbjct 553887 GCCCGGTTAGCTCAGTCGGTAGAGCACCAGACTCTTAATCTGGTGGTCGTGGGTTCGAGC 553828 Query 165770 CCCACGATGGGC 165781 ||||| ||||| Sbjct 553827 CCCACATTGGGC 553816 Score = 104 bits (114), Expect = 5e-17 Identities = 66/72 (92%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 165710 GCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAGC 165769 ||||| |||||||||||||||||| ||||||| |||||||||||||||||||||||||| Sbjct 566946 GCCCGGTTAGCTCAGTCGGTAGAGCACCAGACTCTTAATCTGGTGGTCGTGGGTTCGAGC 567005 Query 165770 CCCACGATGGGC 165781 ||||| ||||| Sbjct 567006 CCCACATTGGGC 567017 Score = 104 bits (114), Expect = 5e-17 Identities = 66/72 (92%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 165710 GCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAGC 165769 ||||| |||||||||||||||||| ||||||| |||||||||||||||||||||||||| Sbjct 601568 GCCCGGTTAGCTCAGTCGGTAGAGCACCAGACTCTTAATCTGGTGGTCGTGGGTTCGAGC 601627 Query 165770 CCCACGATGGGC 165781 ||||| ||||| Sbjct 601628 CCCACATTGGGC 601639 Score = 104 bits (114), Expect = 5e-17 Identities = 66/72 (92%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 165710 GCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAGC 165769 ||||| |||||||||||||||||| ||||||| |||||||||||||||||||||||||| Sbjct 606795 GCCCGGTTAGCTCAGTCGGTAGAGCACCAGACTCTTAATCTGGTGGTCGTGGGTTCGAGC 606854 Query 165770 CCCACGATGGGC 165781 ||||| ||||| Sbjct 606855 CCCACATTGGGC 606866 >seq5 Length=1666694 Score = 87.8 bits (96), Expect = 4e-12 Identities = 107/146 (73%), Gaps = 0/146 (0%) Strand=Plus/Minus Query 230446 CTTATTGGCATGAACGCTGAACTTATGGGACAGTACATCGAATTCGTAGCCGACCGCATT 230505 || || ||||||||| || || ||| | ||||||||||| || || ||||||||| | Sbjct 1125114 CTCATCGGCATGAACAGCGACCTCATGTGCCAGTACATCGAGTTTGTTGCCGACCGCTTG 1125055 Query 230506 TTTGTTGCACTTGGTTACGAGAAAGTGTACAACTCTAAGAACCCCTTTGCATTTATGGAG 230565 |||| |||||||| ||||||| | ||| || ||||||| || | || |||||| Sbjct 1125054 CTTGTCGCACTTGGCAACGAGAAGATCTACCACAAGGAGAACCCGTTCGACTTCATGGAG 1124995 Query 230566 CTCATTTCGCTTCAAGGGAAGACCAA 230591 | || ||| | | || |||||||| Sbjct 1124994 ATGATCTCGATGGAGGGCAAGACCAA 1124969 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1057823593398900