Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhodotorula_20toruloides_20[genbank_20GCA_5F001255795.1_202015-07- 26] 30 sequences; 20,810,536 total letters Query= NC_001611.1 Length=185578 Score E Sequences producing significant alignments: (Bits) Value seq15 104 3e-17 >seq15 Length=702288 Score = 104 bits (114), Expect = 3e-17 Identities = 360/555 (65%), Gaps = 14/555 (3%) Strand=Plus/Minus Query 54010 CCACTCTCCGTCATCCTTCACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGCTATAAA 54069 ||| || |||| | || || || | ||| ||||| || || |||||||| || | || Sbjct 566104 CCAGTCGCCGTTCTGCTCGACACGCTCCATGAAGAGGTCGGGGATCCAAAGGGCAAAGAA 566045 Query 54070 TAGATCTCTGGTTCTATGTTCCTCGTTTCCTGTATTCTTTTTAAGATCGAGGAACGCCAT 54129 | || | | | ||||| || || ||||| || ||||||||| | | Sbjct 566044 CAAGTCGCGCGCGCGGACCTCCTCCTTGCCGTGGTTCTTGCGGAGGTCGAGGAACTCGAA 565985 Query 54130 AATATCAGAATGCCACGGTTCCAAGTATATGGTCATAACTCCAGGCCGTTTGTTTCCTCC 54189 || || | |||||||| || | ||| |||| | | || || || ||||| ||||| Sbjct 565984 GATGTCGGCGTGCCACGGCTCGAGGTAGATGGCGAACGCGCCCGGGCGCTTGTTGCCTCC 565925 Query 54190 CTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATAATACCATTGGA 54249 ||| || | ||| | || ||||| || || || | | ||| || || || || || || Sbjct 565924 CTGGTCGACGTAGCGCGCCGTGTTGTTGTACACGCGGAGCATGGGGATGATGCCGTTCGA 565865 Query 54250 TGCACCATTGGTCCCGGAGATATAGCTTCCACTGGCACGAATATTACTAATTGATAGACC 54309 || || || |||| ||| || || | || || || || || || || || Sbjct 565864 GTAGCCGTTCGTGCCGGCGATGTACGAACCGGTCGCGCGGATGTTGTGGATCGAGAGGCC 565805 Query 54310 TATCCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAA-CGTATCATAGATGCCCT 54368 || || |||||| | || ||||| | ||||| ||| || | ||| || |||||||||| Sbjct 565804 GATGCCGCCTGCCGTCTTGGAGATGAGCGCGCA-CGTCTTGAGCGTGTCGTAGATGCCCT 565746 Query 54369 CTATACTATCATCCATCAT-GTTAAGTAGAA-AACAGCTAGACATTTGGTGACGACTAGT 54426 | || || ||| |||| || | | ||| || | ||| | || || | || Sbjct 565745 CGATCGAGTCGTCCTTCATCGTGACGAGGAAGCACGACGAGAGCTGCGGGTGCGGC--GT 565688 Query 54427 TCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTTTTCAGAAAGTAGATTGTA 54486 || || || || | || || || ||||||||||| | || || | || ||||| Sbjct 565687 GCCGGCGTTGAAGAGCGTCGGCGACGCGTGCGTAAAGTACCGCTCCGACATGAGGTTGTA 565628 Query 54487 CGTCTCGATAGCTGAGTCTATATC----CCATTGATGAATTCCTACTGCGACACGCATTA 54542 ||||||||| || ||| || || || | |||| || || ||||| ||||| | Sbjct 565627 CGTCTCGATCGCGCGGTCAATGTCGTCGCCGTGGATG----CCGACCGCGACGCGCATGA 565572 Query 54543 ACATGTGCTGAGGTC 54557 ||||||||| |||| Sbjct 565571 GCATGTGCTGCGGTC 565557 Score = 82.4 bits (90), Expect = 9e-11 Identities = 115/161 (71%), Gaps = 3/161 (2%) Strand=Plus/Minus Query 24183 GAAAACGTGAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGACGCAAATGAT 24242 || ||||| | |||||||| | |||||||||||||||||| || || || || || || Sbjct 258329 GAGAACGTCAAGCCGGGCATCAAGCCACGCTTTTTAAGCCAGAAGATCGAGGCGAACGAG 258270 Query 24243 CCAGAAAAGAAAATTCCTTCTACTGCCGCAAAGGCAATAAGTCTTTCTCCATAACCGGCG 24302 || || ||||| || || || ||||| || || || | |||| ||| || | ||||| Sbjct 258269 CCGGAGAAGAAGATGCCCTCGACTGCGGCGAAAGCGACCAGTCGTTCCGCAAACACGGCG 258210 Query 24303 C---TGTCATGTATCCACTTTTGAGCCCAATCGGCCTTCTT 24340 | ||| ||||| | ||||| ||||||||||| Sbjct 258209 CGAGGGTCCGAGATCCATCGCAGCGCCCACTCGGCCTTCTT 258169 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 593721377354400