Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Rhodotorula_20toruloides_20[genbank_20GCA_5F001255795.1_202015-07-
26] 30 sequences; 20,810,536 total letters
Query= NC_001973.1
Length=161046
Score E
Sequences producing significant alignments: (Bits) Value
seq3 172 6e-38
seq15 150 2e-31
seq5 132 5e-26
seq13 122 9e-23
seq1 102 8e-17
>seq3
Length=1857496
Score = 172 bits (190), Expect = 6e-38
Identities = 177/229 (77%), Gaps = 2/229 (1%)
Strand=Plus/Plus
Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749
||||| || ||||| || || ||||| ||||| ||||||||| |||| ||||| | |
Sbjct 877370 ATGCAGATCTTCGTCAAGACCCTCACCGGCAAGACCATCACCCTCGAGGTCGAGTCTTCG 877429
Query 40750 GACAGCGTGCA-AACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCA 40808
|||| | | | |||| |||||| || |||| ||||| ||||| ||||| | |||||
Sbjct 877430 GACACCATCGACAACG-TCAAGGCCAAGATTCAGGACAAGGAGGGAATCCCTCCCGACCA 877488
Query 40809 GCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 40868
||| || | |||| ||||||||| ||||| || |||| ||||| |||| |||||||||
Sbjct 877489 GCAGCGCTTGATCTTCGCGGGCAAGCAGCTTGAGGACGGTCGCACGCTCAGCGACTACAA 877548
Query 40869 CATCCAGAAGGAGGCCACGCTGCATCTAGTGTTGCGCTTGAGGGGCGGC 40917
||||||||||||| | || || ||||| |||||| | ||| | || |||
Sbjct 877549 CATCCAGAAGGAGTCTACACTCCATCTGGTGTTGAGGTTGCGCGGTGGC 877597
Score = 93.3 bits (102), Expect = 4e-14
Identities = 101/134 (75%), Gaps = 0/134 (0%)
Strand=Plus/Plus
Query 40766 TCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCAGCAACGACTCATCTACG 40825
|||||| || || | ||||| ||||| ||||| | |||||||| || | |||| ||
Sbjct 878173 TCAAGGCTAAGATCCAGGACAAGGAGGGTATCCCTCCCGACCAGCAGCGCTTGATCTTCG 878232
Query 40826 CGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAACATCCAGAAGGAGGCCA 40885
|||| || ||||| || |||| ||||| || || |||||||||||||| ||| | |
Sbjct 878233 CGGGGAAGCAGCTTGAGGACGGACGCACGCTTTCAGATTACAACATCCAGAAAGAGTCTA 878292
Query 40886 CGCTGCATCTAGTG 40899
||||||| || |||
Sbjct 878293 CGCTGCACCTGGTG 878306
>seq15
Length=702288
Score = 150 bits (166), Expect = 2e-31
Identities = 140/178 (79%), Gaps = 0/178 (0%)
Strand=Plus/Plus
Query 116689 GGACCTGTCCAAGGACACGAGCGACTGGGAGCGCTTGAACGACAACGAGCGCCATTTCAT 116748
|||| | || |||||| | | |||||||| || ||| ||||||||||| || |||||
Sbjct 257760 GGACATCTCGAAGGACCTGTGGGACTGGGACCGACTGACGGACAACGAGCGACACTTCAT 257819
Query 116749 CAAGCACGTGCTGGCCTTTTTCGCCGCCAGCGACGGCATCGTCAACGAGAATCTGGTCGA 116808
| |||||| || ||||| |||||||| |||||||||||||||||||| |||| ||
Sbjct 257820 CTCGCACGTCCTTGCCTTCTTCGCCGCTTCGGACGGCATCGTCAACGAGAACTTGGTGGA 257879
Query 116809 GCGTTTCGCTCAGGAGGTGCAGGTGGCCGAGGCGCGGTGCTTCTACGGCTTTCAGATC 116866
| | ||| | |||||||||| | ||||||||||| || |||||||| || ||||||
Sbjct 257880 GAGGTTCTCGGCGGAGGTGCAGATTGCCGAGGCGCGCTGTTTCTACGGTTTCCAGATC 257937
Score = 109 bits (120), Expect = 6e-19
Identities = 119/158 (75%), Gaps = 0/158 (0%)
Strand=Plus/Plus
Query 116982 AGAAGGCCGAGTGGGCGCTGCGCTGGATCGCCGGCAGAGAGGCCGCCTTCGGCGAGCGCC 117041
|||||||||||||||||||||| |||||| | | | |||| || | || || |
Sbjct 258170 AGAAGGCCGAGTGGGCGCTGCGATGGATCTCGGACCCTCGCGCCGTGTTTGCGGAACGAC 258229
Query 117042 TGGTGGCCTTCGCGGCCGTCGAGGGCGTCTTCTTTTCGGGCAGTTTCGCCGCCATATTTT 117101
|||| || ||||| || ||||||||| ||||||| || ||| |||||| | || || |
Sbjct 258230 TGGTCGCTTTCGCCGCAGTCGAGGGCATCTTCTTCTCCGGCTCGTTCGCCTCGATCTTCT 258289
Query 117102 GGCTCAAGAAACGCGGCCTCATGCCCGGCCTGACTTTC 117139
|||| || || || ||| | ||||||||| |||| |||
Sbjct 258290 GGCTTAAAAAGCGTGGCTTGATGCCCGGCTTGACGTTC 258327
Score = 91.5 bits (100), Expect = 2e-13
Identities = 201/296 (68%), Gaps = 4/296 (1%)
Strand=Plus/Plus
Query 117143 AACGAGCTCATCTCCAGGGACGAGGGTCTGCATTGCGACTTTGCCTGTTTGCTGTTCAAG 117202
|||||||||||||| | ||||| || || || |||||||||||| | || ||| |
Sbjct 258389 AACGAGCTCATCTCGCGCGACGAAGGCCTCCACACCGACTTTGCCTGCCTCCTCTTCTCG 258448
Query 117203 CATTTGGTGCAGCGACCGAGCGCGGCGC-GCGTCAGGGAGATCGTCACCGACGCGGTCGC 117261
|| | | || ||||| ||||| | | ||||| | ||| || |||| || ||||
Sbjct 258449 CACCTCGAGCGCCGACC-AGCGCCTCACCGCGTCGCCCAAATCATCGCCGAAGCCGTCGA 258507
Query 117262 CATCGAGCAGCGCTTCCTCACCGAAGCGCTGCCGGTGCGTCTGCTGGGACTCAATTGCGA 117321
||||||||| ||||| || || || |||| || | || | || | || ||||
Sbjct 258508 GATCGAGCAGGAATTCCTGACGGACGCCTTGCCCGTCGGCTTGATCGGCATGAAC-GCGA 258566
Query 117322 AACG-ATGTCGCAATACATCGAGTTCGTCGCCGACAGGCTGCTGCTCGAGCTGGTCGGCG 117380
| ||| || ||||||||||||||||| ||| | |||| ||| ||| | ||
Sbjct 258567 CCCTCATGCGACAGTACATCGAGTTCGTCGCGGACCGATTGCTTGTCGCGCTTGGGAACG 258626
Query 117381 CCAAGCACTACAACACGCCCAACCCGCTGGACTTTATGAACCTCATCTCCTTGGAG 117436
|||| ||||| | |||||| | ||||||||| | | ||||| |||||
Sbjct 258627 AGAAGCTGTACAATGCCGAGAACCCGTTCGACTTTATGGAGATGATCTCGATGGAG 258682
>seq5
Length=1666694
Score = 132 bits (146), Expect = 5e-26
Identities = 134/172 (78%), Gaps = 2/172 (1%)
Strand=Plus/Minus
Query 116969 CCGTGCGTCAAAGAGAAGGCCGAGTGGGCGCTGCGCTGGATCGCCGGCAGAGAGG-CCGC 117027
|| ||| || | ||||||||||||||||||| ||||||| | | | || | |||
Sbjct 1125544 CCTTGCATCCAGAAGAAGGCCGAGTGGGCGCTCACCTGGATCTCGGAC-GACCGCTCCGT 1125486
Query 117028 CTTCGGCGAGCGCCTGGTGGCCTTCGCGGCCGTCGAGGGCGTCTTCTTTTCGGGCAGTTT 117087
|||||||||||| || || || ||||| |||||||||||| ||||||| || ||| ||
Sbjct 1125485 CTTCGGCGAGCGTCTCGTCGCGTTCGCCGCCGTCGAGGGCATCTTCTTCTCCGGCTCGTT 1125426
Query 117088 CGCCGCCATATTTTGGCTCAAGAAACGCGGCCTCATGCCCGGCCTGACTTTC 117139
||| |||| || ||||||||||| |||||| | |||||||| || || |||
Sbjct 1125425 CGCGTCCATCTTCTGGCTCAAGAAGCGCGGCTTGATGCCCGGACTCACCTTC 1125374
Score = 93.3 bits (102), Expect = 4e-14
Identities = 199/295 (67%), Gaps = 2/295 (1%)
Strand=Plus/Minus
Query 117143 AACGAGCTCATCTCCAGGGACGAGGGTCTGCATTGCGACTTTGCCTGTTTGCTGTTCAAG 117202
|||||||||||||| | ||||| ||||| || |||||||||||| | || ||| |
Sbjct 1125273 AACGAGCTCATCTCGCGCGACGAAGGTCTCCACACCGACTTTGCCTGCCTCCTCTTCTCG 1125214
Query 117203 CATTTGGTGCAGCGACC-GAGCGCGGCGCGCGTCAGGGAGATCGTCACCGACGCGGTCGC 117261
|| | | || || || | | || | || ||| | ||| || ||| |||||||
Sbjct 1125213 CACCTCGAGCGCCGCCCTCACCCCGACACG-GTCGAGCGCATCATCCGCGAGGCGGTCGA 1125155
Query 117262 CATCGAGCAGCGCTTCCTCACCGAAGCGCTGCCGGTGCGTCTGCTGGGACTCAATTGCGA 117321
|||||||| |||||||| || |||||||| || || | || | || ||||
Sbjct 1125154 GATCGAGCAAGAGTTCCTCACGGAGGCGCTGCCCGTCAAGCTCATCGGCATGAACAGCGA 1125095
Query 117322 AACGATGTCGCAATACATCGAGTTCGTCGCCGACAGGCTGCTGCTCGAGCTGGTCGGCGC 117381
|||| || ||||||||||| || |||||| | |||| ||| || | | ||
Sbjct 1125094 CCTCATGTGCCAGTACATCGAGTTTGTTGCCGACCGCTTGCTTGTCGCACTTGGCAACGA 1125035
Query 117382 CAAGCACTACAACACGCCCAACCCGCTGGACTTTATGAACCTCATCTCCTTGGAG 117436
||| |||| ||| | |||||| | ||||| ||| | | ||||| |||||
Sbjct 1125034 GAAGATCTACCACAAGGAGAACCCGTTCGACTTCATGGAGATGATCTCGATGGAG 1124980
Score = 89.7 bits (98), Expect = 5e-13
Identities = 103/139 (74%), Gaps = 0/139 (0%)
Strand=Plus/Plus
Query 40766 TCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCAGCAACGACTCATCTACG 40825
|||||| || || | ||||| ||||| ||||| | |||||||| || || |||| ||
Sbjct 1177039 TCAAGGCCAAGATCCAGGACAAGGAGGGAATCCCTCCCGACCAGCAGCGTCTTATCTTCG 1177098
Query 40826 CGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAACATCCAGAAGGAGGCCA 40885
|||| || ||||| || |||| || || || || |||||||||||||| ||| | |
Sbjct 1177099 CGGGGAAGCAGCTCGAGGACGGTCGTACTCTTTCGGATTACAACATCCAGAAAGAGTCGA 1177158
Query 40886 CGCTGCATCTAGTGTTGCG 40904
| || || || ||| ||||
Sbjct 1177159 CCCTCCACCTCGTGCTGCG 1177177
Score = 84.2 bits (92), Expect = 2e-11
Identities = 102/139 (73%), Gaps = 0/139 (0%)
Strand=Plus/Plus
Query 40766 TCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCAGCAACGACTCATCTACG 40825
|||||| || || | ||||| ||||| ||||| | |||||||| || || |||| ||
Sbjct 1176599 TCAAGGCCAAGATCCAGGACAAGGAGGGAATCCCTCCCGACCAGCAGCGTCTTATCTTCG 1176658
Query 40826 CGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAACATCCAGAAGGAGGCCA 40885
|||| || ||||| || || | || || || || |||||||||||||| ||| | |
Sbjct 1176659 CGGGGAAGCAGCTCGAGGATGGTCGTACTCTTTCGGATTACAACATCCAGAAAGAGTCGA 1176718
Query 40886 CGCTGCATCTAGTGTTGCG 40904
| || || || ||| ||||
Sbjct 1176719 CCCTCCACCTCGTGCTGCG 1176737
Score = 82.4 bits (90), Expect = 8e-11
Identities = 93/124 (75%), Gaps = 3/124 (2%)
Strand=Plus/Minus
Query 116689 GGACCTGTCCAAGGACACGAGCGACTGGGAGCGCTTG---AACGACAACGAGCGCCATTT 116745
|||||| ||||||||| | | ||||||| | | || ||| ||||| | ||
Sbjct 1126027 GGACCTCTCCAAGGACCTCAACCACTGGGACAACAAGCTCAAGGACGACGAGAAGTACTT 1125968
Query 116746 CATCAAGCACGTGCTGGCCTTTTTCGCCGCCAGCGACGGCATCGTCAACGAGAATCTGGT 116805
|||| |||||| || ||||| ||||||||| |||||||||||||||||||| ||||
Sbjct 1125967 CATCTCGCACGTCCTCGCCTTCTTCGCCGCCTCGGACGGCATCGTCAACGAGAACTTGGT 1125908
Query 116806 CGAG 116809
||||
Sbjct 1125907 CGAG 1125904
>seq13
Length=784862
Score = 122 bits (134), Expect = 9e-23
Identities = 133/174 (76%), Gaps = 2/174 (1%)
Strand=Plus/Minus
Query 40726 ATCACCGTCGACGTCGAAGCCACCGACAGCGTGCA-AACGCTCAAGGAAAAAATTCTCGA 40784
|||||| |||| ||||| | | |||| | | |||| |||||| || || | ||
Sbjct 701647 ATCACCCTCGAGGTCGAGTCGTCGGACACGATCGACAACG-TCAAGGCCAAGATCCAGGA 701589
Query 40785 CAAAGAGGGCATCCCCGCGGACCAGCAACGACTCATCTACGCGGGCAAACAGCTGGACGA 40844
||| |||||||||||| | |||||||| || ||||||| ||| ||||| ||||| || ||
Sbjct 701588 CAAGGAGGGCATCCCCCCTGACCAGCAGCGCCTCATCTTCGCCGGCAAGCAGCTCGAGGA 701529
Query 40845 CGAGCGCACCCTCAACGACTACAACATCCAGAAGGAGGCCACGCTGCATCTAGT 40898
|| ||||||||| ||||||||||||||||||||| | || || || || ||
Sbjct 701528 CGGCCGCACCCTCTCGGACTACAACATCCAGAAGGAGTCGACCCTTCACCTCGT 701475
>seq1
Length=2216040
Score = 102 bits (112), Expect = 8e-17
Identities = 92/116 (79%), Gaps = 0/116 (0%)
Strand=Plus/Plus
Query 40783 GACAAAGAGGGCATCCCCGCGGACCAGCAACGACTCATCTACGCGGGCAAACAGCTGGAC 40842
||||| |||||||||||| | |||||||| || || |||| ||| ||||| ||||| ||
Sbjct 892325 GACAAGGAGGGCATCCCCCCCGACCAGCAGCGCCTGATCTTCGCCGGCAAGCAGCTCGAG 892384
Query 40843 GACGAGCGCACCCTCAACGACTACAACATCCAGAAGGAGGCCACGCTGCATCTAGT 40898
|||| ||||| || ||||||||||||||||||||| | || || || || ||
Sbjct 892385 GACGGCCGCACTCTTTCGGACTACAACATCCAGAAGGAGTCGACCCTCCACCTCGT 892440
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 515219006792800
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