Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Rhodotorula_20toruloides_20[genbank_20GCA_5F001255795.1_202015-07-
26] 30 sequences; 20,810,536 total letters
Query= NC_002331.1
Length=178733
Score E
Sequences producing significant alignments: (Bits) Value
seq3 104 3e-17
seq13 82.4 9e-11
seq1 82.4 9e-11
>seq3
Length=1857496
Score = 104 bits (114), Expect = 3e-17
Identities = 155/215 (72%), Gaps = 4/215 (2%)
Strand=Plus/Minus
Query 42971 CAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTC 43030
|||||||| ||| | ||| |||||| || || ||||| || || || || ||||
Sbjct 877582 CAACACCAGATGGAGTGTAGACTCCTTCTGGATGTTGTAGTCGCTGAGCGTGCGACCGTC 877523
Query 43031 ATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTC 43090
|| |||||||| || ||||| || | ||||||||||||| || | | |||||||||
Sbjct 877522 CTCAAGCTGCTTGCCCGCGAAGATCAAGCGCTGCTGGTCGGGAGGGATTCCCTCCTTGTC 877463
Query 43091 CATGATTTTTTG-TTTGAGCGTCG-CCACCGTGTCGCTCGATTCCACATCGACCGTGATG 43148
| ||| | || | |||| ||| | | | ||||| || || || |||| ||||||
Sbjct 877462 C-TGAATCTTGGCCTTGA-CGTTGTCGATGGTGTCCGAAGACTCGACCTCGAGGGTGATG 877405
Query 43149 GTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCAT 43183
|| ||||| || || ||||| || ||||| |||||
Sbjct 877404 GTCTTGCCGGTGAGGGTCTTGACGAAGATCTGCAT 877370
>seq13
Length=784862
Score = 82.4 bits (90), Expect = 9e-11
Identities = 114/157 (73%), Gaps = 2/157 (1%)
Strand=Plus/Plus
Query 42992 CTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAA 43051
|||||| || || ||||| || | || || || |||| || |||||||| || |||||
Sbjct 701492 CTCCTTCTGGATGTTGTAGTCCGAGAGGGTGCGGCCGTCCTCGAGCTGCTTGCCGGCGAA 701551
Query 43052 TATGAGTCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGT 43111
||||| ||||||||||| | || | || |||||||||| ||| || |||| |||
Sbjct 701552 GATGAGGCGCTGCTGGTCAGGGGGGATGCCCTCCTTGTCCTGGATCTTGGCCTTGA-CGT 701610
Query 43112 CG-CCACCGTGTCGCTCGATTCCACATCGACCGTGAT 43147
| | | |||||| ||| || || |||| |||||
Sbjct 701611 TGTCGATCGTGTCCGACGACTCGACCTCGAGGGTGAT 701647
>seq1
Length=2216040
Score = 82.4 bits (90), Expect = 9e-11
Identities = 83/108 (77%), Gaps = 0/108 (0%)
Strand=Plus/Minus
Query 42992 CTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAA 43051
|||||| || || ||||| || | ||||| || |||| || |||||||| || |||||
Sbjct 892423 CTCCTTCTGGATGTTGTAGTCCGAAAGAGTGCGGCCGTCCTCGAGCTGCTTGCCGGCGAA 892364
Query 43052 TATGAGTCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATTTT 43099
|| || ||||||||||||| || | || |||||||||| ||| ||
Sbjct 892363 GATCAGGCGCTGCTGGTCGGGGGGGATGCCCTCCTTGTCCTGGATCTT 892316
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 571817385568400
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |