Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhodotorula_20toruloides_20[genbank_20GCA_5F001255795.1_202015-07- 26] 30 sequences; 20,810,536 total letters Query= NC_002593.1 Length=100999 Score E Sequences producing significant alignments: (Bits) Value seq3 122 6e-23 seq1 89.7 3e-13 seq13 86.0 4e-12 >seq3 Length=1857496 Score = 122 bits (134), Expect = 6e-23 Identities = 163/227 (72%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 34163 CCGCCGCGCAGCCTCAGCACCAGGTGTAAAGTACTTTCTTTCTGTATGTTGTAGTCGGAC 34222 || ||||||| ||||| |||||| || | ||| || ||||| |||||||||||| Sbjct 877596 CCACCGCGCAACCTCAACACCAGATGGAGTGTAGACTCCTTCTGGATGTTGTAGTCGCTG 877537 Query 34223 AGCTGACGGTCGTCGTCCAACTGCTTGCCTGCGAAAATGAGCCGCTGCTGGTCGACGGGC 34282 ||| || |||| || | ||||||||| ||||| || | |||||||||||| || Sbjct 877536 AGCGTGCGACCGTCCTCAAGCTGCTTGCCCGCGAAGATCAAGCGCTGCTGGTCGGGAGGG 877477 Query 34283 ACGCTCTCCTTGTCGGCTATCTTTTGCTTTAGATCGGCTATCGAATCGGTCGATTCGACG 34342 | | ||||||||| ||||| ||| | | | | || | || | || ||||| Sbjct 877476 ATTCCCTCCTTGTCCTGAATCTTGGCCTTGACGTTGTCGATGGTGTCCGAAGACTCGACC 877417 Query 34343 TCCACCGTGATGGTTTTGCCGGTGAGAGTTTTCACAAAGATCTGCAT 34389 || | |||||||| ||||||||||| || || || ||||||||||| Sbjct 877416 TCGAGGGTGATGGTCTTGCCGGTGAGGGTCTTGACGAAGATCTGCAT 877370 Score = 82.4 bits (90), Expect = 5e-11 Identities = 99/135 (73%), Gaps = 0/135 (0%) Strand=Plus/Minus Query 34162 TCCGCCGCGCAGCCTCAGCACCAGGTGTAAAGTACTTTCTTTCTGTATGTTGTAGTCGGA 34221 ||| ||||| || | ||||||||||| | ||| |||||||| |||||||| || || Sbjct 878324 TCCACCGCGAAGACGAAGCACCAGGTGCAGCGTAGACTCTTTCTGGATGTTGTAATCTGA 878265 Query 34222 CAGCTGACGGTCGTCGTCCAACTGCTTGCCTGCGAAAATGAGCCGCTGCTGGTCGACGGG 34281 ||| || |||| || | |||||| || ||||| || | |||||||||||| || Sbjct 878264 AAGCGTGCGTCCGTCCTCAAGCTGCTTCCCCGCGAAGATCAAGCGCTGCTGGTCGGGAGG 878205 Query 34282 CACGCTCTCCTTGTC 34296 | | ||||||||| Sbjct 878204 GATACCCTCCTTGTC 878190 >seq1 Length=2216040 Score = 89.7 bits (98), Expect = 3e-13 Identities = 100/134 (75%), Gaps = 0/134 (0%) Strand=Plus/Minus Query 34163 CCGCCGCGCAGCCTCAGCACCAGGTGTAAAGTACTTTCTTTCTGTATGTTGTAGTCGGAC 34222 |||||||| || | || || ||||| | || || ||||| ||||||||||| || Sbjct 892458 CCGCCGCGGAGACGGAGGACGAGGTGGAGGGTCGACTCCTTCTGGATGTTGTAGTCCGAA 892399 Query 34223 AGCTGACGGTCGTCGTCCAACTGCTTGCCTGCGAAAATGAGCCGCTGCTGGTCGACGGGC 34282 || ||| |||| || | ||||||||| ||||| || || |||||||||||| ||| Sbjct 892398 AGAGTGCGGCCGTCCTCGAGCTGCTTGCCGGCGAAGATCAGGCGCTGCTGGTCGGGGGGG 892339 Query 34283 ACGCTCTCCTTGTC 34296 | || ||||||||| Sbjct 892338 ATGCCCTCCTTGTC 892325 >seq13 Length=784862 Score = 86.0 bits (94), Expect = 4e-12 Identities = 112/155 (72%), Gaps = 0/155 (0%) Strand=Plus/Plus Query 34199 TCTTTCTGTATGTTGTAGTCGGACAGCTGACGGTCGTCGTCCAACTGCTTGCCTGCGAAA 34258 || ||||| ||||||||||| || || ||| |||| || | ||||||||| ||||| Sbjct 701493 TCCTTCTGGATGTTGTAGTCCGAGAGGGTGCGGCCGTCCTCGAGCTGCTTGCCGGCGAAG 701552 Query 34259 ATGAGCCGCTGCTGGTCGACGGGCACGCTCTCCTTGTCGGCTATCTTTTGCTTTAGATCG 34318 ||||| ||||||||||| ||| | || ||||||||| ||||| ||| | | | Sbjct 701553 ATGAGGCGCTGCTGGTCAGGGGGGATGCCCTCCTTGTCCTGGATCTTGGCCTTGACGTTG 701612 Query 34319 GCTATCGAATCGGTCGATTCGACGTCCACCGTGAT 34353 | |||| || | ||| ||||| || | ||||| Sbjct 701613 TCGATCGTGTCCGACGACTCGACCTCGAGGGTGAT 701647 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 323071881876800