Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Rhodotorula_20toruloides_20[genbank_20GCA_5F001255795.1_202015-07-
26] 30 sequences; 20,810,536 total letters
Query= NC_002687.1
Length=335593
Score E
Sequences producing significant alignments: (Bits) Value
seq15 183 7e-41
seq7 100 6e-16
>seq15
Length=702288
Score = 183 bits (202), Expect = 7e-41
Identities = 441/666 (66%), Gaps = 15/666 (2%)
Strand=Plus/Plus
Query 248833 TTCAAAACGCTGGAGAAATCGTATCTCCTCAAAATTGATGGCAAGATCGTGGAACGAATT 248892
||||| ||||| ||| ||||| || ||| | || |||||| | | || |||
Sbjct 565502 TTCAAGACGCTCGAGCGGTCGTACCTGCTCCGCCTCGACGGCAAGGTGGCCGAGCGACCG 565561
Query 248893 CAGCACATGTTGATGCGAGTGGCTGTCGGGATTCACAAGGATGACATAGAGAGCGTGCTC 248952
||||||||| | ||||| || || ||||| || ||| || ||||| || ||| | ||
Sbjct 565562 CAGCACATGCTCATGCGCGTCGCGGTCGGCATCCACGGCGACGACATTGACCGCGCGATC 565621
Query 248953 GAGACGTACACCGGAATGAGTGAACGCTGGATGACACATGCCACACCGACGCTCTTCAAC 249012
|||||||||| | ||| || || | | || || || | |||||||||||||||
Sbjct 565622 GAGACGTACAACCTCATGTCGGAGCGGTACTTTACGCACGCGTCGCCGACGCTCTTCAAC 565681
Query 249013 GCCGGTACCGTCAACAATCAGCTGAGCTCGTGCTTTCTTCTTGCCATGCAAGACGACTCT 249072
||||| || || ||||| |||||||| || | | ||| | ||||||||
Sbjct 565682 GCCGGCACGCCGCACCCGCAGCTCTCGTCGTGCTTCCTCGTCACGATGAAGGACGACTCG 565741
Query 249073 GTCGACGGCATTTATGACACGCTTAAACAGACG---GCGAAGATTTCTAAATTCGCGGGC 249129
|||| ||||| || |||||||| | ||||| ||| || || || || |||
Sbjct 565742 ATCGAGGGCATCTACGACACGCTCA---AGACGTGCGCGCTCATCTCCAAGACGGCAGGC 565798
Query 249130 GGAATCGGTCTCTCCGTCTCCAACATCCGAGCGAAGGGTTCGTACATCAAAGGTACAAAT 249189
|| ||||| ||||| || ||||||||| |||| |||||||||||| || || ||
Sbjct 565799 GGCATCGGCCTCTCGATCCACAACATCCGCGCGACCGGTTCGTACATCGCCGGCACGAAC 565858
Query 249190 GGGGTCAGTGATGGTATCGTACCCCTCCTTCGATGCTTTGAGTCCACCGCCAGGTTCATC 249249
|| | | || ||| | ||| | || || | | ||| || | | | ||
Sbjct 565859 GGCTACTCGAACGGCATCATCCCCATGCTCCGCGTGTACAACAACACGGCGCGCTACGTC 565918
Query 249250 AACCAGGCCGG------GCGCCGAAAGGGGTCGTTCGCCATGTATTTGGAAGTGTGGCAC 249303
|||||| || ||||| ||| |||||||||| || | || |||||||
Sbjct 565919 GACCAGGGAGGCAACAAGCGCC---CGGGCGCGTTCGCCATCTACCTCGAGCCGTGGCAC 565975
Query 249304 GCCGATATATTGGAGTTCCTGGACTTGAAAAAGAACAACGGCAACGAGCTCATGAGAGCG 249363
||||| || || |||||||| ||| | |||||| ||||||| ||| | | |||
Sbjct 565976 GCCGACATCTTCGAGTTCCTCGACCTCCGCAAGAACCACGGCAAGGAGGAGGTCCGCGCG 566035
Query 249364 CGTGACCTCTTCTACGGCCTGTGGGTCTCCGACTTGTTCATGCGCCGCGTCAAGGCCGAC 249423
|| ||| | |||| | ||| ||| || ||||| | |||||| || ||| || ||
Sbjct 566036 CGCGACTTGTTCTTTGCCCTTTGGATCCCCGACCTCTTCATGGAGCGTGTCGAGCAGAAC 566095
Query 249424 GGCGATTGGACGCTTCTTTCTCCGTCCGACGCCCCGGACCTCATCGATCTACACGGCGCC 249483
||||| ||| | || | | ||| |||| || || | ||| ||| | |||||| |
Sbjct 566096 GGCGACTGGCCCCTCTTCTGCCCGGCCGAGGCGCCCGGTCTCCACGAGGTCTACGGCGAC 566155
Query 249484 GACTTC 249489
|| |||
Sbjct 566156 GAGTTC 566161
>seq7
Length=1390771
Score = 100 bits (110), Expect = 6e-16
Identities = 97/125 (78%), Gaps = 0/125 (0%)
Strand=Plus/Plus
Query 254205 CCGCCTTTCAAGCTCGTGATCCTGGACGAGGCGGACACCATGACGGCCGACGCGCAGTCC 254264
||||| |||||| || | ||||| |||||||| ||| | ||||| ||||||||||||
Sbjct 673346 CCGCCGTTCAAGATCATCATCCTCGACGAGGCAGACTCGATGACCCAAGACGCGCAGTCC 673405
Query 254265 GCCCTCCGCCGAACGATGGAGACGCACTCCGTTGTGACGCGTTTTTGCCTGGTGTGCAAC 254324
||||||||||||| ||||||| ||||| | ||| | || ||| || | ||||||
Sbjct 673406 GCCCTCCGCCGAATCATGGAGAACCACTCGAAGATCACGAGGTTCTGCTTGATCTGCAAC 673465
Query 254325 TACGT 254329
|||||
Sbjct 673466 TACGT 673470
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1073765987271040
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |