Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhodotorula_20toruloides_20[genbank_20GCA_5F001255795.1_202015-07- 26] 30 sequences; 20,810,536 total letters Query= NC_003102.1 Length=139342 Score E Sequences producing significant alignments: (Bits) Value seq15 306 3e-78 seq5 104 2e-17 seq3 104 2e-17 >seq15 Length=702288 Score = 306 bits (338), Expect = 3e-78 Identities = 511/739 (69%), Gaps = 0/739 (0%) Strand=Plus/Minus Query 23143 ATCCTTGTAGAGCATGTACGGCGTGCCCGTCTCGACCTGCGACTCGATGATCGCTCGCCA 23202 |||||||||||||||| | || |||||||||||||||| | ||||| || || ||| Sbjct 566287 ATCCTTGTAGAGCATGAAGGGGTTGCCCGTCTCGACCTGGGCCTCGAGGACGGCGTACCA 566228 Query 23203 CATAGTCTGAGCGTGAACACGTCGCACGTACCTGCCTTCTTCCTCGTACTTTTGGTACAA 23262 | |||| ||| | | ||| | | || || | ||||||||||| | | Sbjct 566227 GAGCTTCTGGGCGGGGATGGTGCGCTTGGCGCGACCCTCCTTCTCGTACTTTTCAAAGAG 566168 Query 23263 CGCGTCAAATTCGGCACCGTAACAGTCGGCCAGGCCGGGCGATTGCATCGGACACATGAG 23322 | | | || ||| | ||||| ||| || ||||||| | ||| || | ||| Sbjct 566167 CTCCTTGAACTCGTCGCCGTAGACCTCGTGGAGACCGGGCGCCTCGGCCGGGCAGAAGAG 566108 Query 23323 ACTCCACATTGAGTCATTTTCAACGCGTCTCATAAAAAGATCCGGTATCCATAGAGCGTA 23382 ||| || | || || || ||| || || || || ||||| || || | Sbjct 566107 GGGCCAGTCGCCGTTCTGCTCGACACGCTCCATGAAGAGGTCGGGGATCCAAAGGGCAAA 566048 Query 23383 GAACAGTTCGCGGGCGCGCACCTCCTCTTTGCCGGTGTTCTTTTTCAAATCCAAAAAGTC 23442 ||||| ||||| ||||| |||||||| |||||| |||||| | || | || || Sbjct 566047 GAACAAGTCGCGCGCGCGGACCTCCTCCTTGCCGTGGTTCTTGCGGAGGTCGAGGAACTC 565988 Query 23443 CAACACGTCCGCATGCCACGGCTCGAGGTAAACGGCAAACGCGCCCGGTCTCTTATTGCC 23502 || | ||| || ||||||||||||||||| | ||| ||||||||||| | ||| ||||| Sbjct 565987 GAAGATGTCGGCGTGCCACGGCTCGAGGTAGATGGCGAACGCGCCCGGGCGCTTGTTGCC 565928 Query 23503 GCCCTGATCGACGTAACGGGCCGTGTTGTTGTACACTCTTAGCATCGGCACGAGACCGTT 23562 ||||| |||||||| || ||||||||||||||||| | ||||| || | || ||||| Sbjct 565927 TCCCTGGTCGACGTAGCGCGCCGTGTTGTTGTACACGCGGAGCATGGGGATGATGCCGTT 565868 Query 23563 GGACGCGCCGCCTACGCCCGCCACACTCGAACCTTTTGCTCGAACGTTGTGAACGTGGAA 23622 || |||| ||| || | |||||| | || || | |||||| | || Sbjct 565867 CGAGTAGCCGTTCGTGCCGGCGATGTACGAACCGGTCGCGCGGATGTTGTGGATCGAGAG 565808 Query 23623 ACCTATGCCTCCGCCCGATTTCGATATCATCGCGCATTGTTTCAGAGTGTCGTAGATGCC 23682 || ||||| || ||| || || || | |||||| || || |||||||||||||| Sbjct 565807 GCCGATGCCGCCTGCCGTCTTGGAGATGAGCGCGCACGTCTTGAGCGTGTCGTAGATGCC 565748 Query 23683 CTCGATGCTGTCCTCTTTGGTCGCGACCAAGAAACACGAAGACATTTGCGCTTTGGGCGT 23742 |||||| ||| || || ||| ||| | ||| ||||| || | |||| | ||||| Sbjct 565747 CTCGATCGAGTCGTCCTTCATCGTGACGAGGAAGCACGACGAGAGCTGCGGGTGCGGCGT 565688 Query 23743 AGCGGCCGAGAACAGTGTCGGGCTGGCGTGCGTAAAGTATCCATTCGACATTAGATTGTA 23802 |||| ||| || ||||| |||||||||||||| | | |||||| || ||||| Sbjct 565687 GCCGGCGTTGAAGAGCGTCGGCGACGCGTGCGTAAAGTACCGCTCCGACATGAGGTTGTA 565628 Query 23803 CGTGTCGATGGCGGCATCAATGTCCTCTCCGTGTATACCGATGGCGACGCGCATCATCAT 23862 ||| ||||| ||| |||||||| || ||||| || |||| ||||||||||| | ||| Sbjct 565627 CGTCTCGATCGCGCGGTCAATGTCGTCGCCGTGGATGCCGACCGCGACGCGCATGAGCAT 565568 Query 23863 GTATTGAGGTCTCTCGACC 23881 || || |||| |||| || Sbjct 565567 GTGCTGCGGTCGCTCGGCC 565549 Score = 194 bits (214), Expect = 1e-44 Identities = 407/600 (68%), Gaps = 15/600 (3%) Strand=Plus/Minus Query 22099 GGCGGTCTTGTCCACTGTAAACTGTATGGCGTTTGCGGCCGGTTTGGTGCGAAGATAATA 22158 || || || ||| || || |||| |||||| |||| | |||||| || || || Sbjct 567476 GGTGGCCTGGTCGACGGTGAACTTGATGGCGCCGACGGCAGCGCGGGTGCGGAGGTAGTA 567417 Query 22159 CATGCCCGTCTTCAGACCCATCTTCCACGCGTAAAAATGTATCGACGTCAATTTT-CCAT 22217 |||||||||||| ||||| ||||||| |||| || || |||||||| | | |||| Sbjct 567416 CATGCCCGTCTTGAGACCTTTCTTCCATCCGTAGAAGTGCATCGACGTGAGCTGCGCCAT 567357 Query 22218 AACTCGGCAAGTCCATGTACACATTGAACGACTGACTCTGATCGATAAACGCTCCTCGAT 22277 ||||| | | || || |||| |||||| ||| ||||| ||||| || || | Sbjct 567356 GG-TCGGCGACGAGAGGTGGACGTTGAGCGACTGCGACTGGTCGATGAACGCGCCGCGGT 567298 Query 22278 CGGCGGCCATATTTATCAATGTACG--CAT---CGACATTTCCCATACGGTCTTGTACAG 22332 ||||||| | | | ||| ||| | | ||| || ||||| ||||||||||| | Sbjct 567297 CGGCGGCGAGGT----CGATG-ACGACCTTTTGCGAGATCTCCCACACGGTCTTGTAGAT 567243 Query 22333 TTGCCTGATCTCTAACGGTATCGATTCGATCCTCTGGACGGACCCGTTATTGTGTATGAT 22392 || ||| ||| || || || |||||| || ||||| | ||||| Sbjct 567242 GCGCTTGAGCTCGTCGGGGATGCCGGGGACGTTCTGGATCGAGCCGTTGTGCGCGATGAT 567183 Query 22393 CAAATTTTTAATCGTATCGTTCCACAAACCGATGGCGGTCAAATCTTTGACCAGATGACG 22452 | || || |||| |||||||||| ||| | || | || || || | Sbjct 567182 CGTGTTCTTCATCGCGTCGTTCCACAGGCCGCGGTCGACGAGGTCGCGGAGGAGCCAGGG 567123 Query 22453 GTTCACCACTTGAAACTCGCCGGACAAGACGCGGCGTTGGTAAATGTTGGATGTGAACGG 22512 ||| || || || |||||||||| | ||||||||| ||| |||||||| ||| |||| Sbjct 567122 GTTGACGACCTGGAACTCGCCGGCGAGGACGCGGCGGGTGTAGATGTTGGACGTGTACGG 567063 Query 22513 TTCGAAAGATTCATTGTTTCCCAGTATCTGAGCGGTCGAAGCGGTCGGCATCGGCGCCAA 22572 ||||| | || ||| || || ||||| |||||| ||||| ||||||||||| | Sbjct 567062 CTCGAACGCCTCGTTGAAGCCGAGGATCTGGCTGGTCGAGGCGGTAGGCATCGGCGCGCA 567003 Query 22573 CAGTAGCGAGTTTCTCAAGCCGTGCTTTGAAATTTTACTCTTGAGCATCGACCAGTCCCA 22632 || |||||||| | | |||||||| | ||| || ||| | | | ||||||||| Sbjct 567002 CACGAGCGAGTTGCGGATGCCGTGCTGCGCAATCTTCTCCTTCAACTCGGCCCAGTCCCA 566943 Query 22633 CAGATCGGACGGCGTCACATTGTCCCACATATCGTATTGCAACACGCCGCGACTCGCCGG 22692 ||| || | |||||| || || ||||| |||||| ||||| | |||| | ||||| || Sbjct 566942 CAGGTCCGTCGGCGTGAC---GTTCCACAGATCGTACTGCAAGAGGCCGTGGCTCGCGGG 566886 >seq5 Length=1666694 Score = 104 bits (114), Expect = 2e-17 Identities = 219/321 (68%), Gaps = 32/321 (10%) Strand=Plus/Minus Query 58077 AACGAGTTGATATCGCGCGACGAGGGTCTCCATACTGATTTTGCGTGCCTAATGTACTCT 58136 |||||| | || ||||||||||| |||||||| || || ||||| ||||| | | ||| Sbjct 1125273 AACGAGCTCATCTCGCGCGACGAAGGTCTCCACACCGACTTTGCCTGCCTCCTCTTCTCG 1125214 Query 58137 CACATTGT-------CAATAAACCGACGCGG--GATCGCATCTTGGACATTATCACCGAG 58187 ||| | | | | ||||| ||| || |||||| ||| |||| Sbjct 1125213 CACCTCGAGCGCCGCCCTCACCCCGACACGGTCGAGCGCATC---------ATCCGCGAG 1125163 Query 58188 GCGGTCGCGATCGAAAATGAGTTTGTCACCGAAGCCCTACCGGTGGCCATGCTC---GGT 58244 ||||||| |||||| | ||||| |||| || || || || || || |||| || Sbjct 1125162 GCGGTCGAGATCGAGCAAGAGTTCCTCACGGAGGCGCTGCCCGT---CAAGCTCATCGGC 1125106 Query 58245 ATGAACAATGATTTGATGTCAAAGTACATTGAGTTTGTTGCCGACAGACTT--TTGCTCG 58302 ||||||| || | |||| ||||||| ||||||||||||||| | ||| ||| ||| Sbjct 1125105 ATGAACAGCGACCTCATGTGCCAGTACATCGAGTTTGTTGCCGACCG-CTTGCTTG-TCG 1125048 Query 58303 AACT--GATTGGAGAGCGTCATTACAACACGAAAAATCCGTTTGATTTTATGAATCTGAT 58360 ||| | |||| || ||| ||| | | || ||||| || || ||| | |||| Sbjct 1125047 CACTTGGCAACGAGAAGATC--TACCACAAGGAGAACCCGTTCGACTTCATGGAGATGAT 1124990 Query 58361 CTCGCTCGAGGGCAAGACAAA 58381 |||| | ||||||||||| || Sbjct 1124989 CTCGATGGAGGGCAAGACCAA 1124969 Score = 86.0 bits (94), Expect = 6e-12 Identities = 85/110 (77%), Gaps = 0/110 (0%) Strand=Plus/Minus Query 57963 TTCGCCGAGAGGCTAATCGCGTTCGCCGCCGTCGAAGGTATATTCTTTTCGGGCAGCTTT 58022 |||| |||| | || ||||||||||||||||||| || || ||||| || ||| || Sbjct 1125484 TTCGGCGAGCGTCTCGTCGCGTTCGCCGCCGTCGAGGGCATCTTCTTCTCCGGCTCGTTC 1125425 Query 58023 GCGGCAATATTTTGGATGAAGAAACGCGGCCTGATGCCCGGCCTGACGTT 58072 ||| | || || ||| | ||||| |||||| |||||||||| || || || Sbjct 1125424 GCGTCCATCTTCTGGCTCAAGAAGCGCGGCTTGATGCCCGGACTCACCTT 1125375 >seq3 Length=1857496 Score = 104 bits (114), Expect = 2e-17 Identities = 149/210 (71%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 31192 CATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTC 31251 |||||| || ||||| ||||| || || ||||| || |||||| |||| || || | || Sbjct 877369 CATGCAGATCTTCGTCAAGACCCTCACCGGCAAGACCATCACCCTCGAGGTCGAGTCTTC 877428 Query 31252 CGACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCA 31311 |||| |||| | ||||| | || ||||||||| || | || |||||||| Sbjct 877429 GGACACCATCGACAACGTCAAGGCCAAGATTCAGGACAAGGAGGGAATCCCTCCCGACCA 877488 Query 31312 GCAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTATAA 31371 |||||| | || ||||| ||||| ||| | || ||| | || | ||||| || || Sbjct 877489 GCAGCGCTTGATCTTCGCGGGCAAGCAGCTTGAGGACGGTCGCACGCTCAGCGACTACAA 877548 Query 31372 CATTCAAAAAGAATCGACTCTTCATCTGGT 31401 ||| || || || || || || |||||||| Sbjct 877549 CATCCAGAAGGAGTCTACACTCCATCTGGT 877578 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 445766232837600