Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhodotorula_20toruloides_20[genbank_20GCA_5F001255795.1_202015-07- 26] 30 sequences; 20,810,536 total letters Query= NC_003663.2 Length=224499 Score E Sequences producing significant alignments: (Bits) Value seq15 113 6e-20 seq5 93.3 6e-14 >seq15 Length=702288 Score = 113 bits (124), Expect = 6e-20 Identities = 353/537 (66%), Gaps = 16/537 (3%) Strand=Plus/Minus Query 79939 ACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGCTATAAATAGATCTCTGGTTCTATGC 79998 || || | ||| ||||| || || |||||||| || | || | || | | | | Sbjct 566085 ACACGCTCCATGAAGAGGTCGGGGATCCAAAGGGCAAAGAACAAGTCGCGCGCGCGGACC 566026 Query 79999 TCCTCGTTTCCTGTATTCTTTTTAAGATCGAGGAACGCCATAATATCAGAATGCCACGGT 80058 ||||| || || ||||| || ||||||||| | | || || | |||||||| Sbjct 566025 TCCTCCTTGCCGTGGTTCTTGCGGAGGTCGAGGAACTCGAAGATGTCGGCGTGCCACGGC 565966 Query 80059 TCCAAGTATATGGCCATAACTCCCGGTCGTTTGTTTCCTCCCTGATCTATGTATCTAGCG 80118 || | ||| ||||| | | ||||| || ||||| |||||||| || | ||| | || Sbjct 565965 TCGAGGTAGATGGCGAACGCGCCCGGGCGCTTGTTGCCTCCCTGGTCGACGTAGCGCGCC 565906 Query 80119 GTGTTATTATAAACTCTCAACATTGGAATAATACCATTGGATGTA-CCATTGGTCCCGGA 80177 ||||| || || || | | ||| || || || || || || ||| || || || |||| Sbjct 565905 GTGTTGTTGTACACGCGGAGCATGGGGATGATGCCGTTCGA-GTAGCCGTTCGTGCCGGC 565847 Query 80178 GATATAGCTTCCACTGGCACGAATATTACTAATTGATAGACCTATTCCCCCTGCCATTTT 80237 ||| || || | || || || || || || || || || || |||||| | || Sbjct 565846 GATGTACGAACCGGTCGCGCGGATGTTGTGGATCGAGAGGCCGATGCCGCCTGCCGTCTT 565787 Query 80238 AGAGATTAATGCGCATCGTTTTAA-CGTATCATAGATGCCCTCTATGCTATCATCAATCA 80296 ||||| | ||||| ||| || | ||| || ||||||||||| || || || ||| Sbjct 565786 GGAGATGAGCGCGCA-CGTCTTGAGCGTGTCGTAGATGCCCTCGATCGAGTCGTCCTTCA 565728 Query 80297 T-GTTAAGTAGAA-AACAGCTAGACATTTGGTGACGACTAGTTCCCGCATTAAATAAGGT 80354 | || | | ||| || | ||| | || || | || || || || || | || Sbjct 565727 TCGTGACGAGGAAGCACGACGAGAGCTGCGGGTGCGGC--GTGCCGGCGTTGAAGAGCGT 565670 Query 80355 AGGAGAAGCGTGCGTAAACCATTTTTCAGACAGTAGATTGTACGTCTCAATAGCTGATTC 80414 || || ||||||||||| | || |||| || ||||||||||| || || || Sbjct 565669 CGGCGACGCGTGCGTAAAGTACCGCTCCGACATGAGGTTGTACGTCTCGATCGCGCGGTC 565610 Query 80415 TATATC----CCATTGATGAATTCCTACCGCGACACGCATTAACATGTGCTGAGGTC 80467 || || || | |||| || |||||||| ||||| | ||||||||| |||| Sbjct 565609 AATGTCGTCGCCGTGGATG----CCGACCGCGACGCGCATGAGCATGTGCTGCGGTC 565557 Score = 87.8 bits (96), Expect = 3e-12 Identities = 81/103 (79%), Gaps = 0/103 (0%) Strand=Plus/Minus Query 50008 GAAAACGTGAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGACGCAAATGAC 50067 || ||||| | |||||||| | |||||||||||||||||| || || || || || || Sbjct 258329 GAGAACGTCAAGCCGGGCATCAAGCCACGCTTTTTAAGCCAGAAGATCGAGGCGAACGAG 258270 Query 50068 CCAGAAAAGAAGATTCCTTCTACTGCGGCAAAGGCAACAAGTC 50110 || || |||||||| || || |||||||| || || || |||| Sbjct 258269 CCGGAGAAGAAGATGCCCTCGACTGCGGCGAAAGCGACCAGTC 258227 >seq5 Length=1666694 Score = 93.3 bits (102), Expect = 6e-14 Identities = 120/162 (74%), Gaps = 3/162 (2%) Strand=Plus/Plus Query 50007 GGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGACGCAAATGA 50066 ||| || |||||||||||||| | ||| ||||| || ||||| || |||||||| || || Sbjct 1125371 GGAGAAGGTGAGTCCGGGCATCAAGCCGCGCTTCTTGAGCCAGAAGATGGACGCGAACGA 1125430 Query 50067 CCCAGAAAAGAAGATTCCTTCTACTGCGGCAAAGGCAACAAGTCTCTCTCC-ATAACTG- 50124 || || |||||||| || || || ||||| || || || || | ||| || | || | Sbjct 1125431 GCCGGAGAAGAAGATGCCCTCGACGGCGGCGAACGCGACGAGACGCTCGCCGAAGACGGA 1125490 Query 50125 GCGCT-GTCATGTATCCACTTTTGAGCCCAATCGGCCTTCTT 50165 ||| | ||| ||||| | | ||||| ||||||||||| Sbjct 1125491 GCGGTCGTCCGAGATCCAGGTGAGCGCCCACTCGGCCTTCTT 1125532 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 718268530649200