Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhodotorula_20toruloides_20[genbank_20GCA_5F001255795.1_202015-07- 26] 30 sequences; 20,810,536 total letters Query= NC_004105.1 Length=209771 Score E Sequences producing significant alignments: (Bits) Value seq15 114 2e-20 >seq15 Length=702288 Score = 114 bits (126), Expect = 2e-20 Identities = 351/536 (65%), Gaps = 14/536 (3%) Strand=Plus/Minus Query 72022 ACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGCTATAAATAGATCTCTGGTTCTATGC 72081 || || | ||| ||||| || || |||||||| || | || | || | | | | Sbjct 566085 ACACGCTCCATGAAGAGGTCGGGGATCCAAAGGGCAAAGAACAAGTCGCGCGCGCGGACC 566026 Query 72082 TCCTCGTTTCCTGTATTCTTTTTAAGATCGAGGAACGCCATAATATCAGAATGCCACGGT 72141 ||||| || || ||||| || ||||||||| | | || || | |||||||| Sbjct 566025 TCCTCCTTGCCGTGGTTCTTGCGGAGGTCGAGGAACTCGAAGATGTCGGCGTGCCACGGC 565966 Query 72142 TCCAAGTATATGGCCATAACTCCCGGCCGTTTGTTTCCTCCCTGATCTATGTATCTAGCG 72201 || | ||| ||||| | | ||||| || ||||| |||||||| || | ||| | || Sbjct 565965 TCGAGGTAGATGGCGAACGCGCCCGGGCGCTTGTTGCCTCCCTGGTCGACGTAGCGCGCC 565906 Query 72202 GTGTTATTATAAACTCTCAACATTGGAATAATACCATTGGATGCACCATTGGTCCCGGAG 72261 ||||| || || || | | ||| || || || || || || || || || |||| | Sbjct 565905 GTGTTGTTGTACACGCGGAGCATGGGGATGATGCCGTTCGAGTAGCCGTTCGTGCCGGCG 565846 Query 72262 ATATAGCTTCCACTGGCACGAATATTGCTAATTGATAGACCTATTCCCCCTGCCATTTTA 72321 || || || | || || || ||| || || || || || || |||||| | || Sbjct 565845 ATGTACGAACCGGTCGCGCGGATGTTGTGGATCGAGAGGCCGATGCCGCCTGCCGTCTTG 565786 Query 72322 GAGATTAATGCGCATCGTTTTAA-CGTATCATAGATGCCCTCTATACTATCATCCATCAT 72380 ||||| | ||||| ||| || | ||| || ||||||||||| || || ||| |||| Sbjct 565785 GAGATGAGCGCGCA-CGTCTTGAGCGTGTCGTAGATGCCCTCGATCGAGTCGTCCTTCAT 565727 Query 72381 -GTTAAGTAGAA-AACAGCTAGACATTTGGTGACGACTAGTTCCCGCATTAAATAAGGTA 72438 || | | ||| || | ||| | || || | || || || || || | || Sbjct 565726 CGTGACGAGGAAGCACGACGAGAGCTGCGGGTGCGGC--GTGCCGGCGTTGAAGAGCGTC 565669 Query 72439 GGAGAAGCGTGCGTAAACCATTTTTCAGACAGTAGATTGTACGTCTCAATAGCTGATTCT 72498 || || ||||||||||| | || |||| || ||||||||||| || || || Sbjct 565668 GGCGACGCGTGCGTAAAGTACCGCTCCGACATGAGGTTGTACGTCTCGATCGCGCGGTCA 565609 Query 72499 ATATC----CCATTGATGTATTCCTACCGCGACACGCATTAACATATGCTGAGGTC 72550 || || || | |||| || |||||||| ||||| | ||| ||||| |||| Sbjct 565608 ATGTCGTCGCCGTGGATG----CCGACCGCGACGCGCATGAGCATGTGCTGCGGTC 565557 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 671138948322800