Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Rhodotorula_20toruloides_20[genbank_20GCA_5F001255795.1_202015-07-
26] 30 sequences; 20,810,536 total letters
Query= NC_007383.1
Length=134394
Score E
Sequences producing significant alignments: (Bits) Value
seq3 89.7 4e-13
seq15 84.2 2e-11
>seq3
Length=1857496
Score = 89.7 bits (98), Expect = 4e-13
Identities = 156/227 (69%), Gaps = 0/227 (0%)
Strand=Plus/Plus
Query 23991 ATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATTACCATCGAAGTCGAGGCCAAC 24050
||||| | || || || || | || || || | || ||| |||| |||||| |
Sbjct 877370 ATGCAGATCTTCGTCAAGACCCTCACCGGCAAGACCATCACCCTCGAGGTCGAGTCTTCG 877429
Query 24051 GACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCTCCCGATCAA 24110
||||||||||| | ||||| |||||| ||||| || || || |||||||| ||
Sbjct 877430 GACACCATCGACAACGTCAAGGCCAAGATTCAGGACAAGGAGGGAATCCCTCCCGACCAG 877489
Query 24111 CAGAGACTGATTTACGGCGGCAAGCAACTCGAAGATGACAGAAACGTCAGCGATTATAAC 24170
||| | |||| | || |||||||| || || || | | | ||||||| || |||
Sbjct 877490 CAGCGCTTGATCTTCGCGGGCAAGCAGCTTGAGGACGGTCGCACGCTCAGCGACTACAAC 877549
Query 24171 ATTCAAAAAGAATCTACAATTCATTTAGTGTTAAGATTGAGAGGAGG 24217
|| || || || |||||| | ||| | ||||| || ||| | || ||
Sbjct 877550 ATCCAGAAGGAGTCTACACTCCATCTGGTGTTGAGGTTGCGCGGTGG 877596
>seq15
Length=702288
Score = 84.2 bits (92), Expect = 2e-11
Identities = 139/198 (70%), Gaps = 2/198 (1%)
Strand=Plus/Minus
Query 104620 TTAGTCTTGCCCTCCAGAGAAATATTATTCATAAATTCGAAAGGATTCAAAGTCTTAAAA 104679
|| ||||||||||||| || || | | |||||| ||||| || ||| | || |
Sbjct 258693 TTGGTCTTGCCCTCCATCGAGATCATCTCCATAAAGTCGAACGGGTTCTCGGCATTGTAC 258634
Query 104680 TATTTTTCGTAGCCAAGCTCGATCAACAGTCGATCCGCCACAAATTCGATGTACTCGCAC 104739
|| |||| |||||| ||| | || ||| ||||| || || |||||||||| | |
Sbjct 258633 AGCTTCTCGTTCCCAAGCGCGACAAGCAATCGGTCCGCGACGAACTCGATGTACTGTCGC 258574
Query 104740 ATAGAATGT-GCATTCATGCCCAGCATTGCGACGGGTAAAGCGTTAGTaaaaaaaTCTTT 104798
|| || || || |||||||| | || ||||||| || |||| || | || || |
Sbjct 258573 AT-GAGGGTCGCGTTCATGCCGATCAAGCCGACGGGCAAGGCGTCCGTCAGGAATTCCTG 258515
Query 104799 CTCGATGTCCACGGCTTC 104816
|||||| || ||||||||
Sbjct 258514 CTCGATCTCGACGGCTTC 258497
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 429935842804650
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |