Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhodotorula_20toruloides_20[genbank_20GCA_5F001255795.1_202015-07- 26] 30 sequences; 20,810,536 total letters Query= NC_007921.1 Length=147544 Score E Sequences producing significant alignments: (Bits) Value seq3 156 4e-33 seq15 123 2e-23 seq5 111 1e-19 seq1 95.1 1e-14 seq13 93.3 4e-14 >seq3 Length=1857496 Score = 156 bits (172), Expect = 4e-33 Identities = 172/229 (75%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 131007 GCCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCT 131066 |||||||||||| | || ||| | ||| | || |||||||| || |||||||| ||||| Sbjct 877597 GCCACCGCGCAACCTCAACACCAGATGGAGTGTAGACTCCTTCTGGATGTTGTAGTCGCT 877538 Query 131067 CATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGG 131126 | ||||| |||||| ||||||||||| ||| |||| || ||||||||||| ||||| Sbjct 877537 GAGCGTGCGACCGTCCTCAAGCTGCTTGCCCGCGAAGATCAAGCGCTGCTGGTCGGGAGG 877478 Query 131127 GATTCCTTCTTTGTCGGTGATTTTCTGCTTGAGCTGCTCCACAGTATCGGTGGACTCGAT 131186 |||||| || ||||| || || ||||| | || | || || | ||||||| Sbjct 877477 GATTCCCTCCTTGTCCTGAATCTTGGCCTTGACGTTGTCGATGGTGTCCGAAGACTCGAC 877418 Query 131187 GTCGACGGTAACGGTTTTACCGGTTAGAGTTTTTACGAAAATCTGCATG 131235 |||| ||| | ||| || ||||| || || || ||||| ||||||||| Sbjct 877417 CTCGAGGGTGATGGTCTTGCCGGTGAGGGTCTTGACGAAGATCTGCATG 877369 Score = 100 bits (110), Expect = 3e-16 Identities = 115/155 (74%), Gaps = 0/155 (0%) Strand=Plus/Minus Query 131008 CCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCTC 131067 |||||||| | ||| ||||| | || | || ||||| || || ||||||||||| Sbjct 878323 CCACCGCGAAGACGAAGCACCAGGTGCAGCGTAGACTCTTTCTGGATGTTGTAATCTGAA 878264 Query 131068 ATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGGG 131127 | ||||| |||||| |||||||| || ||| |||| || ||||||||||| |||||| Sbjct 878263 AGCGTGCGTCCGTCCTCAAGCTGCTTCCCCGCGAAGATCAAGCGCTGCTGGTCGGGAGGG 878204 Query 131128 ATTCCTTCTTTGTCGGTGATTTTCTGCTTGAGCTG 131162 || || || ||||| ||| || ||||| ||| Sbjct 878203 ATACCCTCCTTGTCCTGGATCTTAGCCTTGACCTG 878169 Score = 91.5 bits (100), Expect = 1e-13 Identities = 101/135 (75%), Gaps = 0/135 (0%) Strand=Plus/Minus Query 131007 GCCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCT 131066 ||| ||||| | ||||||||| | || | ||||||||| || || || || ||||| Sbjct 877892 GCCTCCGCGGAGACGCAGCACGAGGTGGAGGGTCGACTCTTTCTGGATATTATAATCCGA 877833 Query 131067 CATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGG 131126 | || || |||||| |||||||| || ||| |||| || ||||| ||||| ||||| Sbjct 877832 AAGAGTACGACCGTCCTCGAGCTGCTTCCCCGCGAAGATCAAGCGCTGTTGGTCGGGAGG 877773 Query 131127 GATTCCTTCTTTGTC 131141 |||||| || || || Sbjct 877772 GATTCCCTCCTTATC 877758 >seq15 Length=702288 Score = 123 bits (136), Expect = 2e-23 Identities = 303/448 (68%), Gaps = 21/448 (5%) Strand=Plus/Minus Query 146049 AGATGTCCGCGTGCCACGGTTCAATATAGACGGCGAGGGCTCCTTTTCGTTTG---CCAC 146105 ||||||| ||||||||||| || | |||| ||||| || || || ||| || | Sbjct 565985 AGATGTCGGCGTGCCACGGCTCGAGGTAGATGGCGAACGCGCCCGGGCGCTTGTTGCCTC 565926 Query 146106 CCTGGTCCACGTGACGTACCATGTTGTTAAAGACGCGCACCATGGGCTCGACGCCGCTGG 146165 ||||||| |||| || || ||||||| | ||||| | |||||| || |||| | | Sbjct 565925 CCTGGTCGACGTAGCGCGCCGTGTTGTTGTACACGCGGAGCATGGGGATGATGCCGTTCG 565866 Query 146166 CTACGCCGTTCGTAGAGTTTATTCTGGTGCCGCGGGAGCGCACGCAATGAACATTCACGC 146225 ||||||||| | || | ||| | ||| | | || | | || Sbjct 565865 AGTAGCCGTTCGTGCCGGCGATGTACGAACCGGTCGCGCGGATGTTGTGGATCGAGAGGC 565806 Query 146226 CGAGACCGCC-GCCGTACTTGGATAT-AGCGGCGCA-GTCGCCGAGCGTCTCGTAGATGC 146282 ||| ||||| ||||| |||||| || |||| |||| ||| |||||| |||||||||| Sbjct 565805 CGATGCCGCCTGCCGT-CTTGGAGATGAGCG-CGCACGTCTT-GAGCGTGTCGTAGATGC 565749 Query 146283 CGTCAATGCTATCG--CTTCGAATGCCGAGCAGAAAGCACGAGCACATCTGCGCCATCGG 146340 | || || ||| |||| || || || |||||||| | | ||||| ||| Sbjct 565748 CCTCGATCGAGTCGTCCTTC--ATCGTGACGAGGAAGCACGACGAGAGCTGCGGGTGCGG 565691 Query 146341 CGTCCCCGCCGAGAACAACGTCGGGCTCGCGTGCGTAAACATTTTTCGGCT----CATCA 146396 ||| || || ||| | |||||| |||||||||||| | | ||| ||| | Sbjct 565690 CGTGCCGGCGTTGAAGAGCGTCGGCGACGCGTGCGTAAA----GTACCGCTCCGACATGA 565635 Query 146397 TCCGATACGTTTCGATAGCGTCTTGAATGTCGTCGCCATGAATGCCCAAAGCGACGCGCA 146456 ||||| ||||| ||| | |||||||||||| || ||||| | |||||||||| Sbjct 565634 GGTTGTACGTCTCGATCGCGCGGTCAATGTCGTCGCCGTGGATGCCGACCGCGACGCGCA 565575 Query 146457 TGAGCATGTGTTGGGGCCGCTCCGCCAC 146484 |||||||||| || || ||||| ||||| Sbjct 565574 TGAGCATGTGCTGCGGTCGCTCGGCCAC 565547 Score = 104 bits (114), Expect = 2e-17 Identities = 353/548 (64%), Gaps = 4/548 (1%) Strand=Plus/Minus Query 144748 GGTGCGCAAATAGTACATGCCCGTTTTGAGTCCCGAGCGCCAAGTGTAGTCGTGTATCGA 144807 |||||| | |||||||||||||| ||||| || ||| |||| ||| ||||| Sbjct 567431 GGTGCGGAGGTAGTACATGCCCGTCTTGAGACCTTTCTTCCATCCGTAGAAGTGCATCGA 567372 Query 144808 CGTCATCAGAGCGTACGTGGGCTCCGCCACAAACAAATTTAGCGATTGGCTTTGATCAAT 144867 ||| | | | || || ||| || | | || ||||| || || || || Sbjct 567371 CGTGAGCTGCGCCATGGTCGGCGACGAGAGGTGGACGTTGAGCGACTGCGACTGGTCGAT 567312 Query 144868 GAAAGCGTTGCGGTCGGCGGCCATCTCAATCATA--CGTTTGCATTTCATTTCCCAAGCG 144925 ||| ||| |||||||||||| | || || | | ||||| || ||||| || Sbjct 567311 GAACGCGCCGCGGTCGGCGGCGAGGTCGATGACGACCTTTTGCGAG--ATCTCCCACACG 567254 Query 144926 GTCTTGTACAAACGTTTAATGTGGTCCGGAATGCCGTCAATCGCCTGAATCGACCCCTTG 144985 |||||||| | || || | | ||| || |||||| | ||| ||||| || ||| Sbjct 567253 GTCTTGTAGATGCGCTTGAGCTCGTCGGGGATGCCGGGGACGTTCTGGATCGAGCCGTTG 567194 Query 144986 TGCGCAAATATGGCGTTCCGCATTTCGGACGTGTACAGTTTTAACTTGATCAAGTCGTCA 145045 ||||| | || | |||| ||| || | |||| | || | |||| Sbjct 567193 TGCGCGATGATCGTGTTCTTCATCGCGTCGTTCCACAGGCCGCGGTCGACGAGGTCGCGG 567134 Query 145046 ATTAAGTACTGATTGACGACCTGAAACTCGCCGGCCAACACACGACGCAAATACACGTTA 145105 | | | | ||||||||||| ||||||||||| | || || || || | ||| Sbjct 567133 AGGAGCCAGGGGTTGACGACCTGGAACTCGCCGGCGAGGACGCGGCGGGTGTAGATGTTG 567074 Query 145106 GACGTGAAGGGTTCAAAAGACTCGTTATTGCCCAGGATTTGAGCGGTCGTTGCGGTGGGC 145165 |||||| | || || || | |||||| ||| ||||| || ||||| ||||| ||| Sbjct 567073 GACGTGTACGGCTCGAACGCCTCGTTGAAGCCGAGGATCTGGCTGGTCGAGGCGGTAGGC 567014 Query 145166 ATGTACGCCACCAATAATGAATTGCGCAGGCCGTGCTTCTTGATGTCTTCCTTTAGCGTA 145225 || ||| || | || ||||| | |||||||| | || | ||||| | | Sbjct 567013 ATCGGCGCGCACACGAGCGAGTTGCGGATGCCGTGCTGCGCAATCTTCTCCTTCAACTCG 566954 Query 145226 CCCCAATCCCATAGCGAAGTCGGCCTCACGTCCCACATGTCGTACTGCAAAATGCCCTCG 145285 |||| ||||| || |||||| | |||| ||||| ||||||||||| | ||| | | Sbjct 566953 GCCCAGTCCCACAGGTCCGTCGGCGTGACGTTCCACAGATCGTACTGCAAGAGGCCGTGG 566894 Query 145286 CTGGCGGG 145293 || ||||| Sbjct 566893 CTCGCGGG 566886 >seq5 Length=1666694 Score = 111 bits (122), Expect = 1e-19 Identities = 118/156 (76%), Gaps = 0/156 (0%) Strand=Plus/Minus Query 131007 GCCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCT 131066 ||| ||||| | ||||||||| | || | ||||||||| || || ||||||||||| Sbjct 1177190 GCCTCCGCGGAGACGCAGCACGAGGTGGAGGGTCGACTCTTTCTGGATGTTGTAATCCGA 1177131 Query 131067 CATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGG 131126 | || || |||||| |||||||| || ||| |||| | |||||||||||| ||||| Sbjct 1177130 AAGAGTACGACCGTCCTCGAGCTGCTTCCCCGCGAAGATAAGACGCTGCTGGTCGGGAGG 1177071 Query 131127 GATTCCTTCTTTGTCGGTGATTTTCTGCTTGAGCTG 131162 |||||| || ||||| ||| || ||||| ||| Sbjct 1177070 GATTCCCTCCTTGTCCTGGATCTTGGCCTTGACCTG 1177035 Score = 104 bits (114), Expect = 2e-17 Identities = 116/155 (75%), Gaps = 0/155 (0%) Strand=Plus/Minus Query 131008 CCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCTC 131067 || ||||| | ||||||||| | || | ||||||||| || || ||||||||||| Sbjct 1176749 CCTCCGCGGAGACGCAGCACGAGGTGGAGGGTCGACTCTTTCTGGATGTTGTAATCCGAA 1176690 Query 131068 ATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGGG 131127 | || || ||||| |||||||| || ||| |||| | |||||||||||| |||||| Sbjct 1176689 AGAGTACGACCATCCTCGAGCTGCTTCCCCGCGAAGATAAGACGCTGCTGGTCGGGAGGG 1176630 Query 131128 ATTCCTTCTTTGTCGGTGATTTTCTGCTTGAGCTG 131162 ||||| || ||||| ||| || ||||| ||| Sbjct 1176629 ATTCCCTCCTTGTCCTGGATCTTGGCCTTGACCTG 1176595 Score = 82.4 bits (90), Expect = 7e-11 Identities = 212/312 (68%), Gaps = 11/312 (4%) Strand=Plus/Minus Query 46261 AACGAGCTGATATCGCGCGACGAGGGCCTGCATACGGACTTTGCGTGTCTCTACTA-TAA 46319 |||||||| || ||||||||||| || || || || |||||||| || ||| || | Sbjct 1125273 AACGAGCTCATCTCGCGCGACGAAGGTCTCCACACCGACTTTGCCTGCCTCCTCTTCTCG 1125214 Query 46320 CAC-TCGCGTGCACGACAAGCTTGCGCCCGACACCGTGCTGAGCATGTTCAAGGAGGCGG 46378 ||| ||| | || || | || | |||||||| || | |||| || ||||||| Sbjct 1125213 CACCTCGAGCGC-CGCC---CTCAC-CCCGACACGGTCGAGCGCATCATCCGCGAGGCGG 1125159 Query 46379 TGGCCATTGAGAAGGAGTTTTTTACGGCCGCACTGCCCGCTGCCCTGCTGGGCATGAAC- 46437 | | || ||| | ||||| | |||| || ||||||| || | ||||||||| Sbjct 1125158 TCGAGATCGAGCAAGAGTTCCTCACGGAGGCGCTGCCCGTCAAGCTCATCGGCATGAACA 1125099 Query 46438 GCACAGTCAATGTGCGACTACATCGAGTTTGTAGCGGACCGACTGCTCGT-GCAGCTTCA 46496 || ||| ||||| | |||||||||||||| || ||||| |||| || ||| ||| Sbjct 1125098 GCGACCTCA-TGTGCCAGTACATCGAGTTTGTTGCCGACCGCTTGCTTGTCGCA-CTTGG 1125041 Query 46497 CCAGCCGAAGCATTTTCACGCGCGCAATCCATTTGAGTTTATGAACAACATCTCCCTGGA 46556 | | |||| | ||| | || || || || || ||| | | ||||| |||| Sbjct 1125040 CAACGAGAAGATCTACCACAAGGAGAACCCGTTCGACTTCATGGAGATGATCTCGATGGA 1124981 Query 46557 GGGCAAAACTAA 46568 |||||| || || Sbjct 1124980 GGGCAAGACCAA 1124969 >seq1 Length=2216040 Score = 95.1 bits (104), Expect = 1e-14 Identities = 102/135 (76%), Gaps = 0/135 (0%) Strand=Plus/Minus Query 131007 GCCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCT 131066 ||| ||||| | ||| || || | || | |||||||||||| || |||||||| || Sbjct 892459 GCCGCCGCGGAGACGGAGGACGAGGTGGAGGGTCGACTCCTTCTGGATGTTGTAGTCCGA 892400 Query 131067 CATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGG 131126 | ||||| |||||| ||||||||||| ||| |||| | ||||||||||| || || Sbjct 892399 AAGAGTGCGGCCGTCCTCGAGCTGCTTGCCGGCGAAGATCAGGCGCTGCTGGTCGGGGGG 892340 Query 131127 GATTCCTTCTTTGTC 131141 ||| || || ||||| Sbjct 892339 GATGCCCTCCTTGTC 892325 >seq13 Length=784862 Score = 93.3 bits (102), Expect = 4e-14 Identities = 116/159 (73%), Gaps = 0/159 (0%) Strand=Plus/Plus Query 131037 GGTCGACTCCTTTTGAATGTTGTAATCGCTCATGGTGCGCGAGTCCTCTAGCTGCTTGCC 131096 |||||||||||| || |||||||| || | |||||| |||||| ||||||||||| Sbjct 701486 GGTCGACTCCTTCTGGATGTTGTAGTCCGAGAGGGTGCGGCCGTCCTCGAGCTGCTTGCC 701545 Query 131097 TGCGTAGATTAAACGCTGCTGGTCCGGAGGGATTCCTTCTTTGTCGGTGATTTTCTGCTT 131156 ||| |||| | ||||||||||| || ||||| || || ||||| ||| || ||| Sbjct 701546 GGCGAAGATGAGGCGCTGCTGGTCAGGGGGGATGCCCTCCTTGTCCTGGATCTTGGCCTT 701605 Query 131157 GAGCTGCTCCACAGTATCGGTGGACTCGATGTCGACGGT 131195 || | || | || || | ||||||| |||| ||| Sbjct 701606 GACGTTGTCGATCGTGTCCGACGACTCGACCTCGAGGGT 701644 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 472012622995200