Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Rhodotorula_20toruloides_20[genbank_20GCA_5F001255795.1_202015-07-
26] 30 sequences; 20,810,536 total letters
Query= NC_008291.1
Length=198050
Score E
Sequences producing significant alignments: (Bits) Value
seq15 98.7 1e-15
seq5 84.2 3e-11
>seq15
Length=702288
Score = 98.7 bits (108), Expect = 1e-15
Identities = 361/556 (65%), Gaps = 16/556 (3%)
Strand=Plus/Minus
Query 63052 CCACTCTCCGTCATCCTTCACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGCTATAAA 63111
||| || |||| | || || || | ||| ||||| || || |||||||| || | ||
Sbjct 566104 CCAGTCGCCGTTCTGCTCGACACGCTCCATGAAGAGGTCGGGGATCCAAAGGGCAAAGAA 566045
Query 63112 TAGATCTCTGGTTCTATGTTCCTCGTTTCCTGTATTCTTTTTAAGATCGAGGAACGCCAT 63171
| || | | | ||||| || || ||||| || ||||||||| | |
Sbjct 566044 CAAGTCGCGCGCGCGGACCTCCTCCTTGCCGTGGTTCTTGCGGAGGTCGAGGAACTCGAA 565985
Query 63172 AATATCAGAATGCCACGGTTCCAAGTATATGGCCATAACTCCAGGCCGTTTGTTTCCTCC 63231
|| || | |||||||| || | ||| ||||| | | || || || ||||| |||||
Sbjct 565984 GATGTCGGCGTGCCACGGCTCGAGGTAGATGGCGAACGCGCCCGGGCGCTTGTTGCCTCC 565925
Query 63232 CTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATAATACCATTGGA 63291
||| || | ||| | || ||||| || || || | | ||| || || || || || ||
Sbjct 565924 CTGGTCGACGTAGCGCGCCGTGTTGTTGTACACGCGGAGCATGGGGATGATGCCGTTCGA 565865
Query 63292 TGTA-CCATTGGTCCCTGAGATATAGCTTCCACTGGCACGAATATTACTAATTGATAGAC 63350
||| || || || || | ||| || || | || || || || || || || |
Sbjct 565864 -GTAGCCGTTCGTGCCGGCGATGTACGAACCGGTCGCGCGGATGTTGTGGATCGAGAGGC 565806
Query 63351 CTATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAA-CGTATCATAGATGCCC 63409
| || || |||||| | || ||||| | ||||| ||| || | ||| || |||||||||
Sbjct 565805 CGATGCCGCCTGCCGTCTTGGAGATGAGCGCGCA-CGTCTTGAGCGTGTCGTAGATGCCC 565747
Query 63410 TCTATACTATCATCCATCAT-GTTAAGTAGAA-AACAGCTAGACATTTGGTGACGACTAG 63467
|| || || ||| |||| || | | ||| || | ||| | || || | |
Sbjct 565746 TCGATCGAGTCGTCCTTCATCGTGACGAGGAAGCACGACGAGAGCTGCGGGTGCGGC--G 565689
Query 63468 TTCCCGCATTAAATAAGGTAGGAGAAGCGTGAGTAAACCATTTTTCAGAAAGTAGATTGT 63527
| || || || || | || || || ||||| ||||| | || || | || ||||
Sbjct 565688 TGCCGGCGTTGAAGAGCGTCGGCGACGCGTGCGTAAAGTACCGCTCCGACATGAGGTTGT 565629
Query 63528 ACGTCTCAATAGCTGAGTCTATATC----CCATTGATGAATTCCTACTGCGACACGCATT 63583
||||||| || || ||| || || || | |||| || || ||||| |||||
Sbjct 565628 ACGTCTCGATCGCGCGGTCAATGTCGTCGCCGTGGATG----CCGACCGCGACGCGCATG 565573
Query 63584 AACATGTGCTGAGGTC 63599
| ||||||||| ||||
Sbjct 565572 AGCATGTGCTGCGGTC 565557
>seq5
Length=1666694
Score = 84.2 bits (92), Expect = 3e-11
Identities = 116/162 (72%), Gaps = 3/162 (2%)
Strand=Plus/Plus
Query 32708 GGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGACGCAAATGA 32767
||| || |||||||||||||| | ||| ||||| || ||||| || |||||||| || ||
Sbjct 1125371 GGAGAAGGTGAGTCCGGGCATCAAGCCGCGCTTCTTGAGCCAGAAGATGGACGCGAACGA 1125430
Query 32768 TCCAGAAAAGAAAATTCCTTCTACTGCCGCAAAGGCAATAAGTCTCTCTCCATAACCGGC 32827
|| || ||||| || || || || || || || || | || | ||| || | |||
Sbjct 1125431 GCCGGAGAAGAAGATGCCCTCGACGGCGGCGAACGCGACGAGACGCTCGCCGAAGACGGA 1125490
Query 32828 GCTGTCAT---GTATCCACTTTTGAGCCCAATCGGCCTTCTT 32866
|| ||| | ||||| | | ||||| |||||||||||
Sbjct 1125491 GCGGTCGTCCGAGATCCAGGTGAGCGCCCACTCGGCCTTCTT 1125532
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 633631762388000
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |