Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhodotorula_20toruloides_20[genbank_20GCA_5F001255795.1_202015-07- 26] 30 sequences; 20,810,536 total letters Query= NC_008586.1 Length=131204 Score E Sequences producing significant alignments: (Bits) Value seq5 89.7 4e-13 seq3 89.7 4e-13 >seq5 Length=1666694 Score = 89.7 bits (98), Expect = 4e-13 Identities = 106/144 (74%), Gaps = 0/144 (0%) Strand=Plus/Plus Query 22303 AAAATTCAAGACAAGGAGGGTATTCCACCCGATCAACAACGTCTTATATTTGCCGGCAAA 22362 || || || ||||||||||| || || ||||| || || |||||||| || || || || Sbjct 1176607 AAGATCCAGGACAAGGAGGGAATCCCTCCCGACCAGCAGCGTCTTATCTTCGCGGGGAAG 1176666 Query 22363 CAGTTAGAGGATCACCGCACCGTCTCCGATTACAACATTCAAAAAGAATCCACCATACAT 22422 ||| | |||||| || || | || ||||||||||| || ||||| || ||| | || Sbjct 1176667 CAGCTCGAGGATGGTCGTACTCTTTCGGATTACAACATCCAGAAAGAGTCGACCCTCCAC 1176726 Query 22423 TTAGTTTTGCGATTGCGCGGAGGT 22446 | || |||| | ||||||||| Sbjct 1176727 CTCGTGCTGCGTCTCCGCGGAGGT 1176750 Score = 82.4 bits (90), Expect = 6e-11 Identities = 104/143 (73%), Gaps = 0/143 (0%) Strand=Plus/Plus Query 22303 AAAATTCAAGACAAGGAGGGTATTCCACCCGATCAACAACGTCTTATATTTGCCGGCAAA 22362 || || || ||||||||||| || || ||||| || || |||||||| || || || || Sbjct 1177047 AAGATCCAGGACAAGGAGGGAATCCCTCCCGACCAGCAGCGTCTTATCTTCGCGGGGAAG 1177106 Query 22363 CAGTTAGAGGATCACCGCACCGTCTCCGATTACAACATTCAAAAAGAATCCACCATACAT 22422 ||| | ||||| || || | || ||||||||||| || ||||| || ||| | || Sbjct 1177107 CAGCTCGAGGACGGTCGTACTCTTTCGGATTACAACATCCAGAAAGAGTCGACCCTCCAC 1177166 Query 22423 TTAGTTTTGCGATTGCGCGGAGG 22445 | || |||| | |||||||| Sbjct 1177167 CTCGTGCTGCGTCTCCGCGGAGG 1177189 >seq3 Length=1857496 Score = 89.7 bits (98), Expect = 4e-13 Identities = 156/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278 ||||| || || || || || | ||||| || || |||| || || || || | | Sbjct 877370 ATGCAGATCTTCGTCAAGACCCTCACCGGCAAGACCATCACCCTCGAGGTCGAGTCTTCG 877429 Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338 || ||| | ||| | |||| || ||||| ||||||||||| || || ||||| || Sbjct 877430 GACACCATCGACAACGTCAAGGCCAAGATTCAGGACAAGGAGGGAATCCCTCCCGACCAG 877489 Query 22339 CAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAAC 22398 || || | || || || ||||| ||| | ||||| ||||| || ||| |||||| Sbjct 877490 CAGCGCTTGATCTTCGCGGGCAAGCAGCTTGAGGACGGTCGCACGCTCAGCGACTACAAC 877549 Query 22399 ATTCAAAAAGAATCCACCATACATTTAGTTTTGCGATTGCGCGGAGG 22445 || || || || || || | ||| | || ||| | |||||||| || Sbjct 877550 ATCCAGAAGGAGTCTACACTCCATCTGGTGTTGAGGTTGCGCGGTGG 877596 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 419727846536950