Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhodotorula_20toruloides_20[genbank_20GCA_5F001255795.1_202015-07- 26] 30 sequences; 20,810,536 total letters Query= NC_008603.1 Length=321240 Score E Sequences producing significant alignments: (Bits) Value seq17 114 3e-20 seq14 114 3e-20 seq11 114 3e-20 seq1 114 3e-20 seq12 100 6e-16 seq15 95.1 2e-14 seq6 86.0 1e-11 >seq17 Length=587597 Score = 114 bits (126), Expect = 3e-20 Identities = 69/73 (95%), Gaps = 0/73 (0%) Strand=Plus/Plus Query 142503 AGCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAG 142562 |||||||||||||||||||||||||| | ||||||||||||| ||||||||||||||||| Sbjct 140165 AGCCCGGTTAGCTCAGTCGGTAGAGCACCAGACTCTTAATCTGGTGGTCGTGGGTTCGAG 140224 Query 142563 CCCCACATCGGGC 142575 |||||||| |||| Sbjct 140225 CCCCACATTGGGC 140237 >seq14 Length=779201 Score = 114 bits (126), Expect = 3e-20 Identities = 69/73 (95%), Gaps = 0/73 (0%) Strand=Plus/Plus Query 142503 AGCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAG 142562 |||||||||||||||||||||||||| | ||||||||||||| ||||||||||||||||| Sbjct 505062 AGCCCGGTTAGCTCAGTCGGTAGAGCACCAGACTCTTAATCTGGTGGTCGTGGGTTCGAG 505121 Query 142563 CCCCACATCGGGC 142575 |||||||| |||| Sbjct 505122 CCCCACATTGGGC 505134 >seq11 Length=938730 Score = 114 bits (126), Expect = 3e-20 Identities = 69/73 (95%), Gaps = 0/73 (0%) Strand=Plus/Plus Query 142503 AGCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAG 142562 |||||||||||||||||||||||||| | ||||||||||||| ||||||||||||||||| Sbjct 496657 AGCCCGGTTAGCTCAGTCGGTAGAGCACCAGACTCTTAATCTGGTGGTCGTGGGTTCGAG 496716 Query 142563 CCCCACATCGGGC 142575 |||||||| |||| Sbjct 496717 CCCCACATTGGGC 496729 >seq1 Length=2216040 Score = 114 bits (126), Expect = 3e-20 Identities = 69/73 (95%), Gaps = 0/73 (0%) Strand=Plus/Minus Query 142503 AGCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAG 142562 |||||||||||||||||||||||||| | ||||||||||||| ||||||||||||||||| Sbjct 553888 AGCCCGGTTAGCTCAGTCGGTAGAGCACCAGACTCTTAATCTGGTGGTCGTGGGTTCGAG 553829 Query 142563 CCCCACATCGGGC 142575 |||||||| |||| Sbjct 553828 CCCCACATTGGGC 553816 Score = 114 bits (126), Expect = 3e-20 Identities = 69/73 (95%), Gaps = 0/73 (0%) Strand=Plus/Plus Query 142503 AGCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAG 142562 |||||||||||||||||||||||||| | ||||||||||||| ||||||||||||||||| Sbjct 566945 AGCCCGGTTAGCTCAGTCGGTAGAGCACCAGACTCTTAATCTGGTGGTCGTGGGTTCGAG 567004 Query 142563 CCCCACATCGGGC 142575 |||||||| |||| Sbjct 567005 CCCCACATTGGGC 567017 Score = 114 bits (126), Expect = 3e-20 Identities = 69/73 (95%), Gaps = 0/73 (0%) Strand=Plus/Plus Query 142503 AGCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAG 142562 |||||||||||||||||||||||||| | ||||||||||||| ||||||||||||||||| Sbjct 601567 AGCCCGGTTAGCTCAGTCGGTAGAGCACCAGACTCTTAATCTGGTGGTCGTGGGTTCGAG 601626 Query 142563 CCCCACATCGGGC 142575 |||||||| |||| Sbjct 601627 CCCCACATTGGGC 601639 Score = 114 bits (126), Expect = 3e-20 Identities = 69/73 (95%), Gaps = 0/73 (0%) Strand=Plus/Plus Query 142503 AGCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAG 142562 |||||||||||||||||||||||||| | ||||||||||||| ||||||||||||||||| Sbjct 606794 AGCCCGGTTAGCTCAGTCGGTAGAGCACCAGACTCTTAATCTGGTGGTCGTGGGTTCGAG 606853 Query 142563 CCCCACATCGGGC 142575 |||||||| |||| Sbjct 606854 CCCCACATTGGGC 606866 >seq12 Length=870200 Score = 100 bits (110), Expect = 6e-16 Identities = 154/217 (71%), Gaps = 2/217 (1%) Strand=Plus/Minus Query 279699 GGTTCTCTGTCGGGTGGTTGGAAGATGAAGCTGGCCCTCACTCGCGCCATTCTACTGCG- 279757 || || || || ||||| ||||||||||| || || ||| | |||||||| || || || Sbjct 74963 GGCTCCCTCTCCGGTGGATGGAAGATGAAACTCGCTCTCGCCCGCGCCATCCT-CTTCGA 74905 Query 279758 TGCCGATGTCCTACTGCTTGATGAGCCAACCAACCACATGGACACCACCAACGTAGCCTG 279817 ||||| |||| || || || ||||| |||||||| ||||| | |||||| ||||| Sbjct 74904 GGCCGACATCCTCCTCCTCGACGAGCCGACCAACCATTTGGACGTCCTCAACGTCGCCTG 74845 Query 279818 GCTAGTGTCCTACCTAACCAGTCTGAAGAATGTTTCTTCCCTCATTGTCTCTCACGACTC 279877 ||| | | |||||| | || |||| | || |||| ||||| |||||||| Sbjct 74844 GCTCGAGAACTACCTCTGCTCGCTCAAGACCTGCACCTCGATCATCGTCTCGCACGACTC 74785 Query 279878 TGGCTTCCTAGATGCCGTGTGCTCTGCCATCATTCAC 279914 ||| ||||| | ||| ||| | | |||| | ||| Sbjct 74784 TGGTTTCCTCAACAACGTCTGCACCGACATCCTCCAC 74748 Score = 96.9 bits (106), Expect = 7e-15 Identities = 131/180 (73%), Gaps = 2/180 (1%) Strand=Plus/Plus Query 280179 GGACCCAATGGTGCGGGTAAGTCTACCCTAATCAAAGTCCTGACTGGCGAGACCCAGGCC 280238 || || || || ||||| ||||| ||| | ||||| | ||||||||||||| | || Sbjct 697396 GGCCCGAACGGCGCGGGCAAGTCGACCTTGATCAAGCTGTTGACTGGCGAGACGCTCCCC 697455 Query 280239 -ACTGAGGGGTCCGTTTGGAAGCATCCCAACATGCGGATGGCTTACGTCGCTCAGCACGC 280297 ||| ||| ||| |||||| || ||| | || || || |||||||| |||||||| Sbjct 697456 GACTC-GGGACGCGTCGAGAAGCACCCGAACCTCCGAATCGCCTACGTCGCCCAGCACGC 697514 Query 280298 TTTCCACCACATCGAGAACCACCTGGACATGACTCCTAACCAATACATTCAGTGGCGCTA 280357 ||||||||||||||| | ||||| || | | | || || ||||| ||||||||| Sbjct 697515 CTTCCACCACATCGAGCAGCACCTCGAGAAGTCGGCTGTGCAGTACATCATGTGGCGCTA 697574 Score = 95.1 bits (104), Expect = 2e-14 Identities = 128/176 (73%), Gaps = 3/176 (2%) Strand=Plus/Minus Query 280173 GTCATTGGACCCAATGGTGCGGGTAAGTCTACCCTAATCAAAGTCCTGACTGGCGAGACC 280232 ||| | || || || ||| | || ||||| ||||| |||| |||| | ||||||| Sbjct 74391 GTCCTCGGCCCGAACGGTTCCGGCAAGTCGACCCTCGTCAAGCTCCTCGTCGCCGAGACC 74332 Query 280233 CAGGCCACTGAGGG--GTCCGTT-TGGAAGCATCCCAACATGCGGATGGCTTACGTCGCT 280289 || ||| |||| || | | |||||||| || ||| || || | |||||||| Sbjct 74331 GAGCCCAACAAGGGCGGTGAGGTGTGGAAGCACCCGAACTTGGTCATCGGCTACGTCGCC 74272 Query 280290 CAGCACGCTTTCCACCACATCGAGAACCACCTGGACATGACTCCTAACCAATACAT 280345 |||||||| |||||||||||||| ||||||| |||| |||||| ||| ||||| Sbjct 74271 CAGCACGCCTTCCACCACATCGACCACCACCTCGACAAGACTCCGCTCCAGTACAT 74216 Score = 87.8 bits (96), Expect = 4e-12 Identities = 100/132 (76%), Gaps = 2/132 (2%) Strand=Plus/Minus Query 280680 GGTCTGGACCCCGAGTTTACAACTCACT-CTCGCATTCGCGGTCTTTCTGGAGGCCAGAA 280738 ||||| || |||||||| || || ||| | || || |||||||| || ||||| ||||| Sbjct 73866 GGTCTCGAGCCCGAGTTCACCACCCACAACACG-ATGCGCGGTCTCTCCGGAGGTCAGAA 73808 Query 280739 GGTCAAACTTGTCATCGGAGCAGCTCTGTGGCAACACCCTCACGTGATCGTTCTCGACGA 280798 |||||| | ||| ||| || || |||| | ||||||||| || | |||||||| Sbjct 73807 GGTCAAGGTCGTCCTCGCCGCCGCCACCTGGCGCCGCCCTCACGTCGTCATCCTCGACGA 73748 Query 280799 GCCTACCAACTA 280810 ||| |||||||| Sbjct 73747 GCCCACCAACTA 73736 >seq15 Length=702288 Score = 95.1 bits (104), Expect = 2e-14 Identities = 262/399 (66%), Gaps = 2/399 (1%) Strand=Plus/Minus Query 293032 GTTTTAAGACCCTTCTTCCATGCGTAGAACAGCATAGATGTCATAGACTTCAGTGTGGGA 293091 || || ||||| ||||||||| ||||||| |||| || || | | || || || Sbjct 567409 GTCTTGAGACCTTTCTTCCATCCGTAGAAGTGCATCGACGTGAGCTGCGCCATGGTCGGC 567350 Query 293092 GTGGCCAGGAAAAGGTTCATGCTCTGCGTCTGATCGACAAAGGCACCACGATCAGCAGCG 293151 | | ||| | ||| | ||||| ||| |||| || || || || || || ||| Sbjct 567349 GACGAGAGGTGGACGTTGAGCGACTGCGACTGGTCGATGAACGCGCCGCGGTCGGCGGCG 567290 Query 293152 AGGTCAATCACTGTCTTCATAGAGATCTCCCACGATGTCTTGTACACTGC-CTTGACATC 293210 ||||| || || ||| |||||||||||| |||||||| | ||| ||||| || Sbjct 567289 AGGTCGATGACGACCTTTTGCGAGATCTCCCACACGGTCTTGTAGA-TGCGCTTGAGCTC 567231 Query 293211 AGGATGAATGCCAATAACCTTCTGGATAGACCCTCCGTTGGCAATAATCTGGTTCTTCAT 293270 | ||||| || |||||||| || || || || || ||| ||||||||| Sbjct 567230 GTCGGGGATGCCGGGGACGTTCTGGATCGAGCCGTTGTGCGCGATGATCGTGTTCTTCAT 567171 Query 293271 TGTCTCGGACCAAGTCCCACGAGCAATGAGCTCGCGGACAAGGTAAGAGTTGACAACGGG 293330 | ||| ||| || || | | ||| ||||||| || | | |||||| || | Sbjct 567170 CGCGTCGTTCCACAGGCCGCGGTCGACGAGGTCGCGGAGGAGCCAGGGGTTGACGACCTG 567111 Query 293331 GAACTCACCAGCGAGAGTGCGACGGCTGTAAATGTTCGAAGTGATGGGTTCGGCTGCCTC 293390 |||||| || ||||| ||| ||| |||| ||||| || ||| || ||| ||||| Sbjct 567110 GAACTCGCCGGCGAGGACGCGGCGGGTGTAGATGTTGGACGTGTACGGCTCGAACGCCTC 567051 Query 293391 AACAGACCCGCAAATCTGAGCAGTAGATGCGGTAGGCAT 293429 | ||| ||||| || || ||||||||||| Sbjct 567050 GTTGAAGCCGAGGATCTGGCTGGTCGAGGCGGTAGGCAT 567012 Score = 86.0 bits (94), Expect = 1e-11 Identities = 103/140 (74%), Gaps = 0/140 (0%) Strand=Plus/Minus Query 251577 CTTGCCCTCCAGAGAGATTAGCTCCATGAAGTCGAAGGGGTTTGTGGCATTGTACTGCTT 251636 ||||||||||| ||||| | |||||| |||||||| ||||| |||||||||| |||| Sbjct 258688 CTTGCCCTCCATCGAGATCATCTCCATAAAGTCGAACGGGTTCTCGGCATTGTACAGCTT 258629 Query 251637 GGGATGGCCAAGTGCTACGAAGATGCGGTCTGCCACAAACTCCAGATACTGTCCCATCAG 251696 | ||||| || || | | ||||| || || ||||| | ||||||| ||| || Sbjct 258628 CTCGTTCCCAAGCGCGACAAGCAATCGGTCCGCGACGAACTCGATGTACTGTCGCATGAG 258569 Query 251697 TTCAGAGTTCATGCCAATCA 251716 | ||||||||| |||| Sbjct 258568 GGTCGCGTTCATGCCGATCA 258549 >seq6 Length=1546759 Score = 86.0 bits (94), Expect = 1e-11 Identities = 144/206 (70%), Gaps = 2/206 (1%) Strand=Plus/Plus Query 217837 TGCACTCTCATCCTGACAGAGGGAGACTCAGCTGCCACGCTGGCAACCGCTGGTCTTGCC 217896 ||||| ||||||||||| || |||||||| || |||| || | | ||||| ||| Sbjct 34593 TGCACGCTCATCCTGACCGAAGGAGACTCGGCCAAGGCGCTCGCCGTCTCGGGTCTCGCC 34652 Query 217897 GTGGTGGGTCGTGAAAGGTATGGTATCTTCCCCCTCCGTGGTAAGCTGCTCAACGTGCGC 217956 || || || || || | || || |||||||||| || || ||||| |||||||| ||| Sbjct 34653 GTCGTCGGGCGCGACAACTACGGCGTCTTCCCCCTTCGCGGAAAGCTCCTCAACGTCCGC 34712 Query 217957 GATGCCTCGGTTTCAAGCATTGCT-GCAAATGCAGAGATTGCCGCCATCAAGCAAATCCT 218015 || || | | |||| | || | || || ||||| || |||||||| ||| | Sbjct 34713 GAGGCGACCG-GCAAAGCGCTCCTCGAGAACGCCGAGATCCAGGCGATCAAGCAGATCAT 34771 Query 218016 GGGTCTTCAGGTTGGAAAGACTTACA 218041 ||| | ||| || ||||| |||| Sbjct 34772 GGGCTTGCAGCAGGGCAAGACGTACA 34797 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1027836404925230