Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Rhodotorula_20toruloides_20[genbank_20GCA_5F001255795.1_202015-07-
26] 30 sequences; 20,810,536 total letters
Query= NC_008724.1
Length=288047
Score E
Sequences producing significant alignments: (Bits) Value
seq3 161 2e-34
seq15 159 6e-34
seq12 141 2e-28
seq17 98.7 2e-15
seq14 98.7 2e-15
seq11 98.7 2e-15
seq1 98.7 2e-15
>seq3
Length=1857496
Score = 161 bits (178), Expect = 2e-34
Identities = 172/227 (76%), Gaps = 0/227 (0%)
Strand=Plus/Minus
Query 68235 CCTCCGCGAAGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAG 68294
|| ||||| | | ||| |||| || || || ||||| || |||||||| || ||| |
Sbjct 877596 CCACCGCGCAACCTCAACACCAGATGGAGTGTAGACTCCTTCTGGATGTTGTAGTCGCTG 877537
Query 68295 AGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGA 68354
|| || | || || || | |||||| || ||||| || | | || |||||||| ||
Sbjct 877536 AGCGTGCGACCGTCCTCAAGCTGCTTGCCCGCGAAGATCAAGCGCTGCTGGTCGGGAGGG 877477
Query 68355 ATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACT 68414
|| || |||||||| |||||||| ||||||||| ||||||||||| | || || ||
Sbjct 877476 ATTCCCTCCTTGTCCTGAATCTTGGCCTTGACGTTGTCGATGGTGTCCGAAGACTCGACC 877417
Query 68415 TCCAAGGTGATGGTTTTTCCCGTGAGGGTCTTGACGAATATCTGCAT 68461
|| | ||||||||| || || ||||||||||||||||| ||||||||
Sbjct 877416 TCGAGGGTGATGGTCTTGCCGGTGAGGGTCTTGACGAAGATCTGCAT 877370
Score = 132 bits (146), Expect = 9e-26
Identities = 144/191 (75%), Gaps = 0/191 (0%)
Strand=Plus/Minus
Query 68235 CCTCCGCGAAGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAG 68294
|||||||| || |||| || | ||| || || |||||||| ||||| |||||||| ||
Sbjct 877891 CCTCCGCGGAGACGCAGCACGAGGTGGAGGGTCGACTCTTTCTGGATATTATAATCCGAA 877832
Query 68295 AGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGA 68354
|| || | || || || | ||||||||| ||||| || | | ||||||||||| ||
Sbjct 877831 AGAGTACGACCGTCCTCGAGCTGCTTCCCCGCGAAGATCAAGCGCTGTTGGTCGGGAGGG 877772
Query 68355 ATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACT 68414
|| || ||||| || |||||||| ||||||||| ||||||||||| | || || ||
Sbjct 877771 ATTCCCTCCTTATCCTGAATCTTGGCCTTGACGTTGTCGATGGTGTCGGACGACTCGACC 877712
Query 68415 TCCAAGGTGAT 68425
|| | |||||
Sbjct 877711 TCGAGAGTGAT 877701
>seq15
Length=702288
Score = 159 bits (176), Expect = 6e-34
Identities = 286/418 (68%), Gaps = 0/418 (0%)
Strand=Plus/Minus
Query 30824 GTAATACATAAGCGTCTTGAGACCCTTCTTCCATGCATAGAACAGCATGGAAGACATTGA 30883
||| ||||| |||||||||||| ||||||||| | ||||| |||| || | |
Sbjct 567422 GTAGTACATGCCCGTCTTGAGACCTTTCTTCCATCCGTAGAAGTGCATCGACGTGAGCTG 567363
Query 30884 CTTCATAGAGGGCGCTGCAACGAAGAGGTTCATGCTCTGTGTCTGGTCAACAAACGGACC 30943
| ||| | |||| | | | || ||| | ||| | |||||| | |||| ||
Sbjct 567362 CGCCATGGTCGGCGACGAGAGGTGGACGTTGAGCGACTGCGACTGGTCGATGAACGCGCC 567303
Query 30944 GCGGTCTGCTGCAAGGTCAATGACGGTCTTCATAGACAGCTCCCATGCGGTCTTGTAGAT 31003
|||||| || || ||||| |||||| ||| || | |||||| |||||||||||||
Sbjct 567302 GCGGTCGGCGGCGAGGTCGATGACGACCTTTTGCGAGATCTCCCACACGGTCTTGTAGAT 567243
Query 31004 TGCCTTGAGCTCAGGGTGGATGCCAATGACACGTTGGATGGACCCCCCGTTGGCAATAAT 31063
||||||||| | ||||||| ||| ||||| || || || || || ||
Sbjct 567242 GCGCTTGAGCTCGTCGGGGATGCCGGGGACGTTCTGGATCGAGCCGTTGTGCGCGATGAT 567183
Query 31064 CTGGTTCTTCATGGCCTCGGACCACGTGCCACGAGCGATGAGGTCGCGCACGAGGTAGTT 31123
| ||||||||| || ||| |||| ||| || ||| ||||||||| | ||| ||
Sbjct 567182 CGTGTTCTTCATCGCGTCGTTCCACAGGCCGCGGTCGACGAGGTCGCGGAGGAGCCAGGG 567123
Query 31124 GTTGACCACAGGGAACTCTCCAGCAAGGGTCCGGCGGCTGTACAGATTAGAAGTGATCGG 31183
|||||| || ||||||| || || ||| |||||| |||| | || || ||| |||
Sbjct 567122 GTTGACGACCTGGAACTCGCCGGCGAGGACGCGGCGGGTGTAGATGTTGGACGTGTACGG 567063
Query 31184 CTCCATAGCCTCTACGGACCCGCAGATTTGCGCGGTGGATGCGGTGGGCATCAGCGCG 31241
||| | ||||| | | ||| ||| || ||| || ||||| |||||| |||||
Sbjct 567062 CTCGAACGCCTCGTTGAAGCCGAGGATCTGGCTGGTCGAGGCGGTAGGCATCGGCGCG 567005
Score = 100 bits (110), Expect = 5e-16
Identities = 149/208 (72%), Gaps = 4/208 (2%)
Strand=Plus/Minus
Query 9981 TTGGACTTGCCCTCGAGGGAAATGAGCTCCATGAAGTCAAAGGGGTTCTCGGCGCCAAAC 10040
|||| ||||||||| | || || | |||||| ||||| || ||||||||||| ||
Sbjct 258693 TTGGTCTTGCCCTCCATCGAGATCATCTCCATAAAGTCGAACGGGTTCTCGGCATTGTAC 258634
Query 10041 TGCTTGGGGTAACCGAGTGCTGTGAA--AATGCGGTCAGCCACGAACTCGATGTACTGGC 10098
|||| || || || || | || ||| ||||| || ||||||||||||||||| |
Sbjct 258633 AGCTTCTCGTTCCCAAGCGC-GACAAGCAAT-CGGTCCGCGACGAACTCGATGTACTGTC 258576
Query 10099 TCATCAGGTCCGAGTTCATGCCAATCATGCGGCAGGGGATGGCGTCGCAAATGAAGTCCT 10158
||| ||| || ||||||||| |||| || | ||| | |||||| | ||| ||||
Sbjct 258575 GCATGAGGGTCGCGTTCATGCCGATCAAGCCGACGGGCAAGGCGTCCGTCAGGAATTCCT 258516
Query 10159 TTTCGTTGGCGACCGCTTCCTCGACGAT 10186
||| | |||| ||||| ||| |||
Sbjct 258515 GCTCGATCTCGACGGCTTCGGCGATGAT 258488
>seq12
Length=870200
Score = 141 bits (156), Expect = 2e-28
Identities = 374/559 (67%), Gaps = 28/559 (5%)
Strand=Plus/Plus
Query 225449 AGGAAGCCAGAGTCGTGGGACACAATGATGGACGACACGTTCGTCAGGCCCTTGAGGTGC 225508
||||| ||||||||||| || || ||||| || | | || | || |||||
Sbjct 74776 AGGAAACCAGAGTCGTGCGAGACGATGATCGAGGTGCAGGTCTTGAGCGAGCAGAGGTAG 74835
Query 225509 GTGATGAGCCATGCCACGTTGCTGACGTCCATGTGGTTTGTAGGTTCGTCCAGAAGCAGG 225568
| |||||| || |||||| |||||||| ||||| || || ||||| || || |||
Sbjct 74836 TTCTCGAGCCAGGCGACGTTGAGGACGTCCAAATGGTTGGTCGGCTCGTCGAGGAGGAGG 74895
Query 225569 ATGTCAGCATCAATGAGGATGGCGCGCGTGAGAGACAGCTTCATTTTCCAGCCCCCGGAC 225628
||||| || || | |||||||||||| | ||||| || ||||| ||||| || |||||
Sbjct 74896 ATGTCGGCCTCGAAGAGGATGGCGCGGGCGAGAGCGAGTTTCATCTTCCATCCACCGGAG 74955
Query 225629 AGGGAGCCGATTGAAACAGAGTGCTTA-GCT--TCGTCAAAGCCG---TACTCCAGGA-G 225681
||||||||||| | | | | || | ||| | |||||| |||| |||| |
Sbjct 74956 AGGGAGCCGATGG---CGGCCTCCTGACGCTCGCGGGTGAAGCCGACCGACTCGAGGACG 75012
Query 225682 CGTCTGGA-TAAT--GCGCTCGGGAGAGCTGCGAGCGGCAACGTTGGGGTCGGACGAGAG 225738
| | | | | | ||||| ||| | |||| | | ||| || || ||||||
Sbjct 75013 CTGCGGCACTCGTCCTCGCTCTTGAG-GATGCGCTTG---TCCTTGAGGACGAACGAGAC 75068
Query 225739 GTAATCATATACGGTCATGTCCGAGACAGACG-CGTCAATGTCGTGGTCCACGTACACCG 225797
| ||| | | |||| | | || |||| | |||||| || ||||| | ||
Sbjct 75069 G--ATC-------GAGTTCTCCGTCTC-GTCGCCGTCGACGTCGTGCTCGACGTAGAACG 75118
Query 225798 TCCGGAGCTGAGAAGCATCGGGGAAGCCCTCCAGCTGGCCATTTGCAATCGCACGGAGCA 225857
| |||| || | |||||||||||| | ||| || || | |||||||| | |
Sbjct 75119 TGCGGACCTCGTCGGGGGAGGGGAAGCCCTCGACCTGTCCGTTGTCGATCGCACGCATAA 75178
Query 225858 GGGTACTCTTGCCCGCGCCGTTGGGACCGATGAGGCCGTAATGATTCCCGCGCTTGATGT 225917
|||| |||||||| |||||| | || ||| ||||| | | || |||||||
Sbjct 75179 GGGTCGACTTGCCCGAACCGTTGCGTCCACAGAGACCGTAGCGGTGTCCACGCTTGAGAC 75238
Query 225918 TGAGGCGCGTGGAGTTCAGGAGGATCTTGCCACCATAGGCAAGGGAGAACTCGCAATCGC 225977
|||| | | ||| ||||||||||| | || || || || |||||| ||| | ||
Sbjct 75239 GGAGGGTAGCCGTGTTGAGGAGGATCTTTGCGCCGTAAGCGAGCGAGAACGTGCAGTTGC 75298
Query 225978 ACAGGTCCTCACCCTCCTC 225996
|||||||||| ||||||||
Sbjct 75299 ACAGGTCCTCGCCCTCCTC 75317
Score = 93.3 bits (102), Expect = 8e-14
Identities = 123/170 (72%), Gaps = 3/170 (2%)
Strand=Plus/Plus
Query 224990 ATGTACTGGTTGGGGGTCATGTCCAGGTGGTTCTCAATATGGTGGAAAGCATGCTGGGCT 225049
||||||||| || ||| |||| ||||||| || || |||||||| || ||||||||
Sbjct 74216 ATGTACTGGAGCGGAGTCTTGTCGAGGTGGTGGTCGATGTGGTGGAAGGCGTGCTGGGCG 74275
Query 225050 ACGTACGCCATGCGCATGTTGGGATGCTTCCACA---CAGAGCCCCGAGTCGGTTGTGCC 225106
||||| | ||| || ||| || |||||||||| || |||| | || | | |
Sbjct 74276 ACGTAGCCGATGACCAAGTTCGGGTGCTTCCACACCTCACCGCCCTTGTTGGGCTCGGTC 74335
Query 225107 TCGCCGGTGAGGACCTTGATGAGCGTAGTCTTGCCCGCACCATTGGGGCC 225156
||| || ||||| ||||| ||| || | |||||| | ||| || |||||
Sbjct 74336 TCGGCGACGAGGAGCTTGACGAGGGTCGACTTGCCGGAACCGTTCGGGCC 74385
>seq17
Length=587597
Score = 98.7 bits (108), Expect = 2e-15
Identities = 65/72 (90%), Gaps = 0/72 (0%)
Strand=Plus/Plus
Query 84456 GCCCGGTTAGCTCAGTCGGCAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAGC 84515
||||||||||||||||||| ||||| | || ||||||| || ||||||||||||||||||
Sbjct 140166 GCCCGGTTAGCTCAGTCGGTAGAGCACCAGACTCTTAATCTGGTGGTCGTGGGTTCGAGC 140225
Query 84516 CCCACATCGGGC 84527
||||||| ||||
Sbjct 140226 CCCACATTGGGC 140237
>seq14
Length=779201
Score = 98.7 bits (108), Expect = 2e-15
Identities = 65/72 (90%), Gaps = 0/72 (0%)
Strand=Plus/Plus
Query 84456 GCCCGGTTAGCTCAGTCGGCAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAGC 84515
||||||||||||||||||| ||||| | || ||||||| || ||||||||||||||||||
Sbjct 505063 GCCCGGTTAGCTCAGTCGGTAGAGCACCAGACTCTTAATCTGGTGGTCGTGGGTTCGAGC 505122
Query 84516 CCCACATCGGGC 84527
||||||| ||||
Sbjct 505123 CCCACATTGGGC 505134
>seq11
Length=938730
Score = 98.7 bits (108), Expect = 2e-15
Identities = 65/72 (90%), Gaps = 0/72 (0%)
Strand=Plus/Plus
Query 84456 GCCCGGTTAGCTCAGTCGGCAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAGC 84515
||||||||||||||||||| ||||| | || ||||||| || ||||||||||||||||||
Sbjct 496658 GCCCGGTTAGCTCAGTCGGTAGAGCACCAGACTCTTAATCTGGTGGTCGTGGGTTCGAGC 496717
Query 84516 CCCACATCGGGC 84527
||||||| ||||
Sbjct 496718 CCCACATTGGGC 496729
>seq1
Length=2216040
Score = 98.7 bits (108), Expect = 2e-15
Identities = 65/72 (90%), Gaps = 0/72 (0%)
Strand=Plus/Minus
Query 84456 GCCCGGTTAGCTCAGTCGGCAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAGC 84515
||||||||||||||||||| ||||| | || ||||||| || ||||||||||||||||||
Sbjct 553887 GCCCGGTTAGCTCAGTCGGTAGAGCACCAGACTCTTAATCTGGTGGTCGTGGGTTCGAGC 553828
Query 84516 CCCACATCGGGC 84527
||||||| ||||
Sbjct 553827 CCCACATTGGGC 553816
Score = 98.7 bits (108), Expect = 2e-15
Identities = 65/72 (90%), Gaps = 0/72 (0%)
Strand=Plus/Plus
Query 84456 GCCCGGTTAGCTCAGTCGGCAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAGC 84515
||||||||||||||||||| ||||| | || ||||||| || ||||||||||||||||||
Sbjct 566946 GCCCGGTTAGCTCAGTCGGTAGAGCACCAGACTCTTAATCTGGTGGTCGTGGGTTCGAGC 567005
Query 84516 CCCACATCGGGC 84527
||||||| ||||
Sbjct 567006 CCCACATTGGGC 567017
Score = 98.7 bits (108), Expect = 2e-15
Identities = 65/72 (90%), Gaps = 0/72 (0%)
Strand=Plus/Plus
Query 84456 GCCCGGTTAGCTCAGTCGGCAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAGC 84515
||||||||||||||||||| ||||| | || ||||||| || ||||||||||||||||||
Sbjct 601568 GCCCGGTTAGCTCAGTCGGTAGAGCACCAGACTCTTAATCTGGTGGTCGTGGGTTCGAGC 601627
Query 84516 CCCACATCGGGC 84527
||||||| ||||
Sbjct 601628 CCCACATTGGGC 601639
Score = 98.7 bits (108), Expect = 2e-15
Identities = 65/72 (90%), Gaps = 0/72 (0%)
Strand=Plus/Plus
Query 84456 GCCCGGTTAGCTCAGTCGGCAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAGC 84515
||||||||||||||||||| ||||| | || ||||||| || ||||||||||||||||||
Sbjct 606795 GCCCGGTTAGCTCAGTCGGTAGAGCACCAGACTCTTAATCTGGTGGTCGTGGGTTCGAGC 606854
Query 84516 CCCACATCGGGC 84527
||||||| ||||
Sbjct 606855 CCCACATTGGGC 606866
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 921622054391600
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |