Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Rhodotorula_20toruloides_20[genbank_20GCA_5F001255795.1_202015-07-
26] 30 sequences; 20,810,536 total letters
Query= NC_009898.1
Length=368683
Score E
Sequences producing significant alignments: (Bits) Value
seq3 122 2e-22
seq6 84.2 5e-11
>seq3
Length=1857496
Score = 122 bits (134), Expect = 2e-22
Identities = 167/232 (72%), Gaps = 1/232 (0%)
Strand=Plus/Minus
Query 288242 CATGTCCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGT 288301
|||| |||||||| | || | || ||||| | || || || ||||| || ||||
Sbjct 877600 CATG-CCACCGCGCAACCTCAACACCAGATGGAGTGTAGACTCCTTCTGGATGTTGTAGT 877542
Query 288302 CGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAAT 288361
|| ||||||||| ||||| || | || || || |||||||||| ||||| ||
Sbjct 877541 CGCTGAGCGTGCGACCGTCCTCAAGCTGCTTGCCCGCGAAGATCAAGCGCTGCTGGTCGG 877482
Query 288362 CTGGGATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATT 288421
|||||||| || || ||||| || || || || ||||| || || | || || |
Sbjct 877481 GAGGGATTCCCTCCTTGTCCTGAATCTTGGCCTTGACGTTGTCGATGGTGTCCGAAGACT 877422
Query 288422 CTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCAT 288473
| || ||||| ||||| ||||| ||||| || ||||||||||| ||||||||
Sbjct 877421 CGACCTCGAGGGTGATGGTCTTGCCGGTGAGGGTCTTGACGAAGATCTGCAT 877370
Score = 100 bits (110), Expect = 7e-16
Identities = 141/197 (72%), Gaps = 1/197 (1%)
Strand=Plus/Minus
Query 288242 CATGTCCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGT 288301
|||| || |||||||| | || ||||| || | || ||||| ||||||||||| |
Sbjct 877895 CATG-CCTCCGCGGAGACGCAGCACGAGGTGGAGGGTCGACTCTTTCTGGATATTATAAT 877837
Query 288302 CGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAAT 288361
| | || || || ||||| || | || || || |||||||||| ||||||||
Sbjct 877836 CCGAAAGAGTACGACCGTCCTCGAGCTGCTTCCCCGCGAAGATCAAGCGCTGTTGGTCGG 877777
Query 288362 CTGGGATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATT 288421
|||||||| || |||||||| || || || || ||||| || || | ||| ||| |
Sbjct 877776 GAGGGATTCCCTCCTTATCCTGAATCTTGGCCTTGACGTTGTCGATGGTGTCGGACGACT 877717
Query 288422 CTACTTCGAGCGTGATC 288438
| || ||||| ||||||
Sbjct 877716 CGACCTCGAGAGTGATC 877700
>seq6
Length=1546759
Score = 84.2 bits (92), Expect = 5e-11
Identities = 97/131 (74%), Gaps = 0/131 (0%)
Strand=Plus/Minus
Query 325343 TCCTTACCACCCTGCAATCTCGAACCGAACTGGCCCTCCGGCAACAACCAGTTGATGTTA 325402
||||| || ||||| | | || |||||||||||| | ||| | | |||||||||
Sbjct 35783 TCCTTGCCGCCCTGGAGACGCGTACCGAACTGGCCGTTCGGGTCGAGCACGTTGATGTTG 35724
Query 325403 TTGCTTCCGACATAATCCTGTGCAAGGTTCACGATGGTCCCTTGCAGAGATGCTTCGCCA 325462
||||| |||||| | | ||| || ||| |||||||| || ||||| || || |||||
Sbjct 35723 TTGCTGCCGACAAAGTTCTGCGCGAGGCCGACGATGGTGCCCTGCAGCGAGGCGTCGCCG 35664
Query 325463 TGGTGATAGGC 325473
||||| || ||
Sbjct 35663 TGGTGGTACGC 35653
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1179653946570340
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |