Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhodotorula_20toruloides_20[genbank_20GCA_5F001255795.1_202015-07- 26] 30 sequences; 20,810,536 total letters Query= NC_011183.1 Length=154641 Score E Sequences producing significant alignments: (Bits) Value seq15 246 3e-60 >seq15 Length=702288 Score = 246 bits (272), Expect = 3e-60 Identities = 428/618 (69%), Gaps = 12/618 (2%) Strand=Plus/Plus Query 93724 TACTTTGCCTTCAAAACTCTGGAGAAGTCGTACCTCCTCAAGATGGATGGCAGGGTTTCC 93783 ||||| | |||||| || || ||| ||||||||| ||| | || |||| ||| || Sbjct 565493 TACTTCGGCTTCAAGACGCTCGAGCGGTCGTACCTGCTCCGCCTCGACGGCAAGGTGGCC 565552 Query 93784 GAGCGACCGCACCAGCTGCTGATGCGCGTCGCCATCGGGATTCACGGCCACGACATG--C 93841 ||||||||||| || |||| ||||||||||| |||| || |||||| ||||||| | Sbjct 565553 GAGCGACCGCAGCACATGCTCATGCGCGTCGCGGTCGGCATCCACGGCGACGACATTGAC 565612 Query 93842 CGAATGTTTTGCGGG-CTTTCAGAGACATGCGGGACAAGAGGTA---TACCATGGCCACC 93897 || | | || | | | || |||| ||| | |||| ||| || | Sbjct 565613 CGCGCGAT---CGAGACGTACAACCTCATGTCGGA---GCGGTACTTTACGCACGCGTCG 565666 Query 93898 CCGACCCTGTTCAACGCGGGGACCCCGGTGCCACAGATGTCTTCGTGTTTCCTGATGACG 93957 ||||| || |||||||| || || ||| || ||| | || ||||| ||||| | ||| Sbjct 565667 CCGACGCTCTTCAACGCCGGCACGCCGCACCCGCAGCTCTCGTCGTGCTTCCTCGTCACG 565726 Query 93958 AACAAGGCCGACTCCATCTCCGGAATTTTCGACAGCCTCAAGGACTGTGCGACCATCTCA 94017 | |||| |||||| ||| || || | ||||| |||||| || ||| |||||| Sbjct 565727 ATGAAGGACGACTCGATCGAGGGCATCTACGACACGCTCAAGACGTGCGCGCTCATCTCC 565786 Query 94018 AAATACGCGGGGGGAATCGGGATCAGTGTCCACGACGTACGTGCCAGGGGTTCCTACATC 94077 || || || || ||||| || ||||| || | || || | ||||| |||||| Sbjct 565787 AAGACGGCAGGCGGCATCGGCCTCTCGATCCACAACATCCGCGCGACCGGTTCGTACATC 565846 Query 94078 CGCGGTACCAATGGCACCTCCAACGGCCTCGTCCCTATGCTCCGGGTCTTCAACAACGCG 94137 ||| || || ||| ||| |||||| || |||| |||||||| || | ||||||| || Sbjct 565847 GCCGGCACGAACGGCTACTCGAACGGCATCATCCCCATGCTCCGCGTGTACAACAACACG 565906 Query 94138 GCGCGCTACGTGGACCAGGGTGGTGGGAGGAGGAAGGGTTCTTTCGCGGTCTATCTCGAG 94197 ||||||||||| |||||||| || | | | ||| | ||||| |||| |||||| Sbjct 565907 GCGCGCTACGTCGACCAGGGAGGCAACAAGCGCCCGGGCGCGTTCGCCATCTACCTCGAG 565966 Query 94198 CCCTGGCACGCGGACGTGCAGGCTTTCATCGACCTGCGAAAGAACCACGGCAACGATCTG 94257 || |||||||| ||| | | ||| ||||||| || |||||||||||||| || | Sbjct 565967 CCGTGGCACGCCGACATCTTCGAGTTCCTCGACCTCCGCAAGAACCACGGCAAGGAGGAG 566026 Query 94258 GAGAGGGCCAGAGACCTCTTCTACGCTCTCTGGGTGCCAGACCTTTTTATGAAACGCGTC 94317 | | || | ||| | |||| || || ||| | || ||||| || ||| | || ||| Sbjct 566027 GTCCGCGCGCGCGACTTGTTCTTTGCCCTTTGGATCCCCGACCTCTTCATGGAGCGTGTC 566086 Query 94318 GAGAAAAACTCCGCCTGG 94335 ||| | ||| || |||| Sbjct 566087 GAGCAGAACGGCGACTGG 566104 Score = 145 bits (160), Expect = 8e-30 Identities = 239/334 (72%), Gaps = 8/334 (2%) Strand=Plus/Plus Query 95089 AACGCGCTGCTTGTG-GCCCCCATGCCCACGGCCTCCACGGCGCAGATCCTTGGCAACAA 95147 ||| |||| | |||| || || ||||| || ||||| || |||||||| ||| ||| Sbjct 566991 AACTCGCT-CGTGTGCGCGCCGATGCCTACCGCCTCGACCAGCCAGATCCTCGGCTTCAA 567049 Query 95148 CGAGTCGTTCGAACCCTTCACCTCCAACGTGTACAACAGGCGGGTGCTCGCCGGGGAATT 95207 |||| ||||||| || | ||| |||||| | |||| | | || || |||||||| || || Sbjct 567050 CGAGGCGTTCGAGCCGTACACGTCCAACATCTACACCCGCCGCGTCCTCGCCGGCGAGTT 567109 Query 95208 CCCCGTCATCAACAAGCACCTCCTACGGGACCT-GACGTCTCTGGGTGTGTGGGGTGACA 95266 || ||| ||||| ||||| || ||||| | || | | || ||||| ||| Sbjct 567110 CCAGGTCGTCAACCCCTGGCTCCTCCGCGACCTCGTCGAC-CGCGGCCTGTGGAACGACG 567168 Query 95267 AGGTCAAGAACCAACTGCTACGCGC-CAACGGCTCCGTCCAGAACATCCCGCAAATACCG 95325 | | |||||| | | ||||| ||||||||| |||||||| |||| || || Sbjct 567169 CGATGAAGAACACGATCAT-CGCGCACAACGGCTCGATCCAGAACGTCCCCGGCATCCCC 567227 Query 95326 GAGGACATCAAGGCGC-TCTACAAGACCGTGTGGGAGATCCCGCAGCGCGTGATACTCGA 95384 || || ||||| ||| ||||||||||||||||||||||| |||| || | |||| Sbjct 567228 GACGAGCTCAAG-CGCATCTACAAGACCGTGTGGGAGATCTCGCAAAAGGTCGTCATCGA 567286 Query 95385 CCACGCGGCCGCCCGCGGGCCCTTCATCTGCCAG 95418 || ||| |||| |||||| | |||||| |||| Sbjct 567287 CCTCGCCGCCGACCGCGGCGCGTTCATCGACCAG 567320 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 494723014478800