Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhodotorula_20toruloides_20[genbank_20GCA_5F001255795.1_202015-07- 26] 30 sequences; 20,810,536 total letters Query= NC_011616.1 Length=148634 Score E Sequences producing significant alignments: (Bits) Value seq3 168 6e-37 seq15 105 6e-18 seq5 84.2 2e-11 >seq3 Length=1857496 Score = 168 bits (186), Expect = 6e-37 Identities = 177/230 (77%), Gaps = 2/230 (1%) Strand=Plus/Minus Query 126887 CCACCGCGTAATCGCAACACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCGCCC 126946 |||||||| || | |||||||| ||| | |||||||| || || || ||||| |||| Sbjct 877596 CCACCGCGCAACCTCAACACCAGATGGAGTGTAGACTCCTTCTGGATGTTGTAGTCGCTG 877537 Query 126947 ATCGTGCGAGAATCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGGT 127006 | ||||||| || || ||||| || || ||| ||||||| |||||||| |||||||| Sbjct 877536 AGCGTGCGACCGTCCTCAAGCTGCTTGCCCGCGAAGATCAAGCGCTGCTGGTCGGGAGGG 877477 Query 127007 ATGCCCTCCTTGTCCGTGATTTTCTGCTTGA-GTTGTTCGACGGTGTCCGTACTCTCGAC 127065 || |||||||||||| || || ||||| |||| |||| |||||||| | |||||| Sbjct 877476 ATTCCCTCCTTGTCCTGAATCTTGGCCTTGACGTTG-TCGATGGTGTCCGAAGACTCGAC 877418 Query 127066 TTCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCATGG 127115 |||| ||| | || |||||||| || || || || || |||||||||| Sbjct 877417 CTCGAGGGTGATGGTCTTGCCGGTGAGGGTCTTGACGAAGATCTGCATGG 877368 Score = 107 bits (118), Expect = 2e-18 Identities = 115/152 (76%), Gaps = 0/152 (0%) Strand=Plus/Minus Query 126886 TCCACCGCGTAATCGCAACACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCGCC 126945 ||||||||| | || | ||||| || | |||||||||||| || || |||||||| Sbjct 878324 TCCACCGCGAAGACGAAGCACCAGGTGCAGCGTAGACTCTTTCTGGATGTTGTAATCTGA 878265 Query 126946 CATCGTGCGAGAATCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGG 127005 | |||||| || || ||||| || || ||| ||||||| |||||||| |||||||| Sbjct 878264 AAGCGTGCGTCCGTCCTCAAGCTGCTTCCCCGCGAAGATCAAGCGCTGCTGGTCGGGAGG 878205 Query 127006 TATGCCCTCCTTGTCCGTGATTTTCTGCTTGA 127037 || |||||||||||| ||| || ||||| Sbjct 878204 GATACCCTCCTTGTCCTGGATCTTAGCCTTGA 878173 Score = 86.0 bits (94), Expect = 6e-12 Identities = 89/117 (76%), Gaps = 0/117 (0%) Strand=Plus/Plus Query 126937 GTAATCGCCCATCGTGCGAGAATCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTG 126996 ||| |||| || |||||| | || || ||||| || |||||| ||||||| ||||||| Sbjct 594118 GTAGTCGCGCAGCGTGCGGGCGTCCTCGAGCTGCTTCCCAGCGAAGATCAAGCGCTGCTC 594177 Query 126997 ATCGGGAGGTATGCCCTCCTTGTCCGTGATTTTCTGCTTGAGTTGTTCGACGGTGTC 127053 ||||| || ||||||||||||||| ||| || ||||| | | ||| ||||| Sbjct 594178 GTCGGGCGGGATGCCCTCCTTGTCCTGGATCTTGGTCTTGACGTCGTAGACCGTGTC 594234 >seq15 Length=702288 Score = 105 bits (116), Expect = 6e-18 Identities = 213/315 (68%), Gaps = 17/315 (5%) Strand=Plus/Plus Query 47244 AACGAGCTAATCTCGAGAGACGAAGGCCTGCACACCAACTTTGCCTGTCTCTACTAC--- 47300 |||||||| |||||| | ||||||||||| |||||| |||||||||| ||| || | Sbjct 258389 AACGAGCTCATCTCGCGCGACGAAGGCCTCCACACCGACTTTGCCTGCCTCCTCTTCTCG 258448 Query 47301 -AACACTAGAGTCGATCAAAAGTTGGACGTGCC-CACCG--TCAGCGACATGTTTGCCGA 47356 | | | || | ||| || | ||| ||||| || | | || | ||||| Sbjct 258449 CACCTCGAGCGCCGACCA----------GCGCCTCACCGCGTCGCCCAAATCATCGCCGA 258498 Query 47357 AGCCGTCGCCATTGAGATGGAGTTTTTCGCCGAGGCTCTGCCCGAATCTTTAGTGGGAAT 47416 |||||||| || ||| ||| || | | || || |||||| || | || || Sbjct 258499 AGCCGTCGAGATCGAGCAGGAATTCCTGACGGACGCCTTGCCCGTCGGCTTGATCGGCAT 258558 Query 47417 GAACGCGGAGATGATGAGAAAGTACATCGAATTTGTCGCCGACCGCCTGCTCGTTCAGCT 47476 ||||||| | ||| || |||||||||| || ||||| ||||| |||| || ||| Sbjct 258559 GAACGCGACCCTCATGCGACAGTACATCGAGTTCGTCGCGGACCGATTGCTTGTCGCGCT 258618 Query 47477 AAAGTATCCCAAGATTTACCACACCGAGAATCCATTCGAGTTTATGAACAACATTTCGCT 47536 | | ||| | ||| | ||||||| || ||||| |||||| | | || ||| | Sbjct 258619 TGGGAACGAGAAGCTGTACAATGCCGAGAACCCGTTCGACTTTATGGAGATGATCTCGAT 258678 Query 47537 CGAGGGCAAGACCAA 47551 |||||||||||||| Sbjct 258679 GGAGGGCAAGACCAA 258693 Score = 87.8 bits (96), Expect = 2e-12 Identities = 102/138 (74%), Gaps = 0/138 (0%) Strand=Plus/Minus Query 146037 GTCTACGAGGGCCTTGATGAGATACTGGTTGACCACCTGAAACTCGCCGGCGAGAACGCG 146096 ||| |||||| | || ||| | ||||||| ||||| |||||||||||||| ||||| Sbjct 567149 GTCGACGAGGTCGCGGAGGAGCCAGGGGTTGACGACCTGGAACTCGCCGGCGAGGACGCG 567090 Query 146097 CCTCAGATACACGTTGCTGGTGAACGGCTCGAACGACTCGTTGTTACCGAGTATCTGCGC 146156 | || | |||| ||| |||||||||||| ||||||| ||||| ||||| Sbjct 567089 GCGGGTGTAGATGTTGGACGTGTACGGCTCGAACGCCTCGTTGAAGCCGAGGATCTGGCT 567030 Query 146157 CGTCGTAGCGGTAGGCAT 146174 |||| ||||||||||| Sbjct 567029 GGTCGAGGCGGTAGGCAT 567012 >seq5 Length=1666694 Score = 84.2 bits (92), Expect = 2e-11 Identities = 109/151 (72%), Gaps = 0/151 (0%) Strand=Plus/Minus Query 126887 CCACCGCGTAATCGCAACACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCGCCC 126946 || ||||| | |||| ||| | || | || |||||||| || || |||||||| Sbjct 1176749 CCTCCGCGGAGACGCAGCACGAGGTGGAGGGTCGACTCTTTCTGGATGTTGTAATCCGAA 1176690 Query 126947 ATCGTGCGAGAATCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGGT 127006 | || ||| ||| || ||||| || || ||| |||| | |||||||| |||||||| Sbjct 1176689 AGAGTACGACCATCCTCGAGCTGCTTCCCCGCGAAGATAAGACGCTGCTGGTCGGGAGGG 1176630 Query 127007 ATGCCCTCCTTGTCCGTGATTTTCTGCTTGA 127037 || |||||||||||| ||| || ||||| Sbjct 1176629 ATTCCCTCCTTGTCCTGGATCTTGGCCTTGA 1176599 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 475500621687200