Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhodotorula_20toruloides_20[genbank_20GCA_5F001255795.1_202015-07- 26] 30 sequences; 20,810,536 total letters Query= NC_013772.1 Length=176677 Score E Sequences producing significant alignments: (Bits) Value seq3 147 2e-30 seq1 123 3e-23 seq13 114 1e-20 seq5 96.9 4e-15 seq4 86.0 7e-12 >seq3 Length=1857496 Score = 147 bits (162), Expect = 2e-30 Identities = 172/230 (75%), Gaps = 2/230 (1%) Strand=Plus/Minus Query 46365 TGCCTCCTCTTAAACGCAACACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGG 46424 |||| || | || | |||||||||||| | |||| |||||| ||||| ||||||||| Sbjct 877598 TGCCACCGCGCAACCTCAACACCAGATGGAGTGTAGACTCCTTCTGGATGTTGTAGTCGC 877539 Query 46425 ATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCG 46484 || ||||| |||| || ||||||||||| ||||| ||||||||||||||||||| | Sbjct 877538 TGAGCGTGCGACCGTCCTCAAGCTGCTTGCCCGCGAAGATCAAGCGCTGCTGGTCGGGAG 877479 Query 46485 GCACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGTCG-CCACCGTGTCGCTCGATTCC 46543 | | | |||||||||| ||||| ||||| ||| | | | ||||| || || Sbjct 877478 GGATTCCCTCCTTGTCCTGAATCTTGGCCTTGA-CGTTGTCGATGGTGTCCGAAGACTCG 877420 Query 46544 ACATCCACCGTGATGGTTTTGCCCGTCAGCGTTTTAACAAAGATTTGCAT 46593 || || | |||||||| ||||| || || || || || ||||| ||||| Sbjct 877419 ACCTCGAGGGTGATGGTCTTGCCGGTGAGGGTCTTGACGAAGATCTGCAT 877370 Score = 109 bits (120), Expect = 6e-19 Identities = 108/140 (77%), Gaps = 0/140 (0%) Strand=Plus/Minus Query 46378 ACGCAACACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTC 46437 ||| | |||||| |||| ||| ||| || ||||| ||||| || || || ||||| | Sbjct 878312 ACGAAGCACCAGGTGCAGCGTAGACTCTTTCTGGATGTTGTAATCTGAAAGCGTGCGTCC 878253 Query 46438 GTCGTCGAGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTT 46497 ||| || |||||||| || ||||| ||||||||||||||||||| || | | |||||| Sbjct 878252 GTCCTCAAGCTGCTTCCCCGCGAAGATCAAGCGCTGCTGGTCGGGAGGGATACCCTCCTT 878193 Query 46498 GTCCATGATCTTCTTCTTGA 46517 |||| |||||| ||||| Sbjct 878192 GTCCTGGATCTTAGCCTTGA 878173 Score = 102 bits (112), Expect = 9e-17 Identities = 95/118 (81%), Gaps = 2/118 (2%) Strand=Plus/Plus Query 46417 GTAGTCGGATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAAGCGCTGCTG 46476 ||||||| || ||||| |||| ||||||||||| || ||||| ||||||||||||| Sbjct 594118 GTAGTCGCGCAGCGTGCGGGCGTCCTCGAGCTGCTTCCCAGCGAAGATCAAGCGCTGCTC 594177 Query 46477 GTCGGCCGGCACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGTCG-CCACCGTGTC 46533 ||||| ||| | || |||||||||| |||||| |||||| ||||| |||||||| Sbjct 594178 GTCGGGCGGGATGCCCTCCTTGTCCTGGATCTTGGTCTTGA-CGTCGTAGACCGTGTC 594234 Score = 100 bits (110), Expect = 3e-16 Identities = 140/194 (72%), Gaps = 2/194 (1%) Strand=Plus/Minus Query 46365 TGCCTCCTCTTAAACGCAACACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGG 46424 ||||||| | | ||||| ||| || || | || ||| || |||||||| || || | Sbjct 877893 TGCCTCCGCGGAGACGCAGCACGAGGTGGAGGGTCGACTCTTTCTGGATATTATAATCCG 877834 Query 46425 ATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCG 46484 | ||||| || |||| ||||||||||| || ||||| ||||||||||| ||||||| | Sbjct 877833 AAAGAGTACGACCGTCCTCGAGCTGCTTCCCCGCGAAGATCAAGCGCTGTTGGTCGGGAG 877774 Query 46485 GCACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGTCG-CCACCGTGTCGCTCGATTCC 46543 | | | |||||| ||| ||||| ||||| ||| | | | |||||| ||| || Sbjct 877773 GGATTCCCTCCTTATCCTGAATCTTGGCCTTGA-CGTTGTCGATGGTGTCGGACGACTCG 877715 Query 46544 ACATCCACCGTGAT 46557 || || | ||||| Sbjct 877714 ACCTCGAGAGTGAT 877701 >seq1 Length=2216040 Score = 123 bits (136), Expect = 3e-23 Identities = 92/108 (85%), Gaps = 0/108 (0%) Strand=Plus/Minus Query 46402 CTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAA 46461 |||||| ||||| |||||||| || |||||||| |||| |||||||||||||||||||| Sbjct 892423 CTCCTTCTGGATGTTGTAGTCCGAAAGAGTGCGGCCGTCCTCGAGCTGCTTGCCGGCGAA 892364 Query 46462 TATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATCTT 46509 |||| |||||||||||||| || | || |||||||||| |||||| Sbjct 892363 GATCAGGCGCTGCTGGTCGGGGGGGATGCCCTCCTTGTCCTGGATCTT 892316 >seq13 Length=784862 Score = 114 bits (126), Expect = 1e-20 Identities = 121/157 (77%), Gaps = 2/157 (1%) Strand=Plus/Plus Query 46402 CTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAA 46461 |||||| ||||| |||||||| || || ||||| |||| |||||||||||||||||||| Sbjct 701492 CTCCTTCTGGATGTTGTAGTCCGAGAGGGTGCGGCCGTCCTCGAGCTGCTTGCCGGCGAA 701551 Query 46462 TATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGT 46521 || | |||||||||||| | || | || |||||||||| |||||| ||||| ||| Sbjct 701552 GATGAGGCGCTGCTGGTCAGGGGGGATGCCCTCCTTGTCCTGGATCTTGGCCTTGA-CGT 701610 Query 46522 CG-CCACCGTGTCGCTCGATTCCACATCCACCGTGAT 46557 | | | |||||| ||| || || || | ||||| Sbjct 701611 TGTCGATCGTGTCCGACGACTCGACCTCGAGGGTGAT 701647 >seq5 Length=1666694 Score = 96.9 bits (106), Expect = 4e-15 Identities = 113/153 (74%), Gaps = 0/153 (0%) Strand=Plus/Minus Query 46365 TGCCTCCTCTTAAACGCAACACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGG 46424 ||||||| | | ||||| ||| || || | || ||| || ||||| ||||| || | Sbjct 1177191 TGCCTCCGCGGAGACGCAGCACGAGGTGGAGGGTCGACTCTTTCTGGATGTTGTAATCCG 1177132 Query 46425 ATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCG 46484 | ||||| || |||| ||||||||||| || ||||| || | ||||||||||||| | Sbjct 1177131 AAAGAGTACGACCGTCCTCGAGCTGCTTCCCCGCGAAGATAAGACGCTGCTGGTCGGGAG 1177072 Query 46485 GCACGCTCTCCTTGTCCATGATCTTCTTCTTGA 46517 | | | |||||||||| |||||| ||||| Sbjct 1177071 GGATTCCCTCCTTGTCCTGGATCTTGGCCTTGA 1177039 Score = 87.8 bits (96), Expect = 2e-12 Identities = 110/151 (73%), Gaps = 0/151 (0%) Strand=Plus/Minus Query 46367 CCTCCTCTTAAACGCAACACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGGAT 46426 ||||| | | ||||| ||| || || | || ||| || ||||| ||||| || || Sbjct 1176749 CCTCCGCGGAGACGCAGCACGAGGTGGAGGGTCGACTCTTTCTGGATGTTGTAATCCGAA 1176690 Query 46427 AGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCGGC 46486 ||||| || | || ||||||||||| || ||||| || | ||||||||||||| || Sbjct 1176689 AGAGTACGACCATCCTCGAGCTGCTTCCCCGCGAAGATAAGACGCTGCTGGTCGGGAGGG 1176630 Query 46487 ACGCTCTCCTTGTCCATGATCTTCTTCTTGA 46517 | | |||||||||| |||||| ||||| Sbjct 1176629 ATTCCCTCCTTGTCCTGGATCTTGGCCTTGA 1176599 >seq4 Length=768797 Score = 86.0 bits (94), Expect = 7e-12 Identities = 95/124 (77%), Gaps = 2/124 (2%) Strand=Plus/Minus Query 46385 ACCAGATGCAATGTACTCTCCTT-TTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTC 46443 ||||| ||||| || | | ||| ||| | |||||||| || || ||||| |||| || Sbjct 276184 ACCAGGTGCAAGGT-CGCGCCTCGTTGAAGGTTGTAGTCCGAGAGTGTGCGACCGTCTTC 276126 Query 46444 GAGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCAT 46503 ||||||||||| |||| |||| |||||||||||||| ||| |||| ||||||| Sbjct 276125 GAGCTGCTTGCGCTCGAAGATCAGGCGCTGCTGGTCGGGCGGGACGCCAAGCTTGTCCTG 276066 Query 46504 GATC 46507 |||| Sbjct 276065 GATC 276062 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 565238188035600