Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhodotorula_20toruloides_20[genbank_20GCA_5F001255795.1_202015-07- 26] 30 sequences; 20,810,536 total letters Query= NC_014765.1 Length=198519 Score E Sequences producing significant alignments: (Bits) Value seq11 277 2e-69 seq9 136 5e-27 seq1 132 6e-26 >seq11 Length=938730 Score = 277 bits (306), Expect = 2e-69 Identities = 643/965 (67%), Gaps = 7/965 (1%) Strand=Plus/Plus Query 7010 TCACCCGTTAAGATGGCGGCTTGGACCGTCGCCCCGTATGCGACCGCCTCATCGGGGTTA 7069 || || || | |||||| || ||||| | || ||||| ||||| ||||| || ||||| Sbjct 726479 TCGCCGGTGAGGATGGCAGCCTGGACGGCGGCGCCGTACGCGACGGCCTCGTCCGGGTTG 726538 Query 7070 ATCGTTTTATTCAGTTCTTTACCGTTAAAATAATCCGATAACATTTGTTGAATTTTCGGG 7129 |||| || || | || || ||| || | || || | | | || | |||| Sbjct 726539 ATCGACTTGTTGGGCTCCTTGCCGCCGAAGAAGTCGGAGACGAGCTTCTGGACACGCGGG 726598 Query 7130 ATTCGTGTCGATCCACCGACCAAAACGATTTCATTCACTTTCGATTTATCGATCTTTGAG 7189 || || ||||| || ||||| | || || || | || | || || ||||| ||| Sbjct 726599 ATACGGGTCGAGCCGCCGACGAGGACAATCTCGTGGACCGACTGCTTGTCAATCTTCGAG 726658 Query 7190 TCTCGAAGTGTTTTTTCGACAGGTTCCATACATTTA-CGGAACAAGTCCATACACAGTTC 7248 || || || || ||||| || ||||| | | | ||||| | |||| || || || Sbjct 726659 TCGCGGAGGACCTTCTCGACGGGCTCCAT-CGTCGAGCGGAAGAGGTCCTGGCAGAGCTC 726717 Query 7249 CTCAAAACGTGCACGGGTAATGGATGTATAGAAATCAACGCCGTCGTATAACGAATCAAT 7308 ||| || || || ||||| || || || ||||| || | ||| ||| | | ||| || || Sbjct 726718 CTCGAAGCGGGCGCGGGTGATCGAGGTGTAGAAGTCGATGCCCTCGAAGAGCGAGTCGAT 726777 Query 7309 TTCAATGGTTGTTTGTGCCGTCGAAGATAACGTTCGCTTTGCGCGCTCACACGCCGTTCG 7368 || ||||| || || || | ||| || | || ||||| |||||||| || || || || Sbjct 726778 CTCGATGGTGGTCTGGGCGGCCGACGAGAGGGTGCGCTTGGCGCGCTCGCAAGCGGTGCG 726837 Query 7369 TAAACGACGAAGGGCACGCGGGTTACCGGAAATATCTTTCTTATGTTTACGTTTAAACTC 7428 | ||| || ||||| || | ||| || | || ||||| | || || || ||||| Sbjct 726838 GAGACGGCGGAGGGCGCGGGCGTTCGACGAGAGGTCCTTCTTGTTCTTGCGCTTGAACTC 726897 Query 7429 TTCAGAGAAGTGTCGAAGGAGTCTCGAATCGAAATCTTCACCACCCAAGTGTGTATCCCC 7488 | ||||| | ||| | || || || ||||| || | ||| || || || Sbjct 726898 GGCGACAAAGTGGTTGACGAGGCGGTTGTCAAAGTCCTCACCGCCGAGGTGGGTGTCTCC 726957 Query 7489 CGCGGTCGCTTTGACTTCAAAGATACCTCCTTCAATGTTTAACAACGAAACATCAAACGT 7548 || ||||| ||||| || ||||| || | || || | | | ||| || || ||||| Sbjct 726958 GGCAGTCGCCTTGACCTCGAAGATGCCCTCCTCGATCGTGAGGAGCGAGACGTCGAACGT 727017 Query 7549 ACCACCACCCAGGTCAAAAATGAGTACGTTCGTATCGTCGTCTTTGTTCTTATCGAGACC 7608 || || |||| |||||| ||||| |||||| | ||| | || ||||| ||||| || Sbjct 727018 GCCGCCGCCCAAGTCAAAGATGAGGACGTTCTTCTCGCCCTCGGACTTCTTGTCGAGGCC 727077 Query 7609 GTACGCGATAGCCGCCGCCGTTGGTTCATTAATAATACGAAGACAGTTCAGGCCAGCAAT 7668 ||||||||| || || || || || || || || || || || ||| ||||| | || Sbjct 727078 GTACGCGATGGCGGCGGCGGTGGGCTCGTTGATGATGCGGAGGACGTTGAGGCCCGAGAT 727137 Query 7669 AGTTGCCGCATCTTTCGTCGCTTGTCGTTGCGAATCGTTAAAGTAGGCCGGGACCGTTAC 7728 | || || || || || || || ||||| ||||| |||||||| ||||| || || Sbjct 727138 CAAGCCGGCGTCCTTGGTGGCCTGACGCTGCGAGTCGTTGAAGTAGGCGGGGACGGTGAC 727197 Query 7729 GACCGCGTCCGTGACTTTCTTACCGAGATACGATTCCGCGATATCTTTCATTTTGGTAAG 7788 ||| |||| | ||| | ||||| || | || || | || ||||| ||| || Sbjct 727198 GACGGCGTTGGCGACCGTGCCGCCGAGGTAGGCCTCGGCCGTCTCCTTCATCTTGAGGAG 727257 Query 7789 AACCATCGATGAAATCTCTTCAGCCGCAAACTGTTTCGTTTCACCGTTAAAATCAACTTC 7848 |||||||| || ||||| || | || |||| ||| || || || | || || Sbjct 727258 GACCATCGACGAGATCTCCTCGGGCGTGAACTCCTTCTGCTCGCCCTTGTACTCGACCGA 727317 Query 7849 AATCATGGGTTTATCCGCAGCAC-CGGGGATAACCTTATACGACCAATCTTTCATATCGT 7907 || ||||| || ||| || | ||| ||||| ||| ||| | ||||| ||| Sbjct 727318 GATGATGGGCTTGCCCG----ACTTGTCGATGACCTTGAACGGCCAGTGCTTCATGTCGG 727373 Query 7908 CTTGGACCTGTTGGTCCGAAAACTTTCTTCCGATAAGACGCTTTGCATCAAAAACTGTGT 7967 ||||||| ||| | |||||| | |||||| || ||||| || || || || ||| Sbjct 727374 ACTGGACCTCGGCGTCGGCAAACTTGCGTCCGATGAGGCGCTTGGCGTCGAAGACGGTGC 727433 Query 7968 TTTTG 7972 | ||| Sbjct 727434 TGTTG 727438 >seq9 Length=1352023 Score = 136 bits (150), Expect = 5e-27 Identities = 523/812 (64%), Gaps = 27/812 (3%) Strand=Plus/Minus Query 7013 CCCGTTAAGATGGCGGCTTGGACCGTCGCCCCGTATGCGACCGCCTCATCGGGGTTAATC 7072 || || | || |||||| ||||| | || ||||| ||||| ||||| |||||||| ||| Sbjct 663464 CCGGTGAGGACGGCGGCCTGGACGGCGGCACCGTACGCGACGGCCTCGTCGGGGTTGATC 663405 Query 7073 GTTTTATTCAGTTCTTTACCGTTAAAATAATCCGATAACATTTGTTGAATTTTCGGGATT 7132 | || || || | ||| || | || || | | || || || ||||| Sbjct 663404 GACTTGTTGAGCTGGCGGCCGCCGAAGAACTCGGAGACGAGCGACTGGATCTTGGGGATA 663345 Query 7133 CGTGTCGATCCACCGACCAAAACGATTTCATTCACTTTCGATTTATCGATCTTTGAGTC- 7191 || ||||| |||||||| | || || || | || || || || |||||||| | ||| Sbjct 663344 CGGGTCGAGCCACCGACGAGGACAATGTCGTCAACCTTGGACTTGTCGATCTTGGCGTCC 663285 Query 7192 -TC--GAAGTGTTTTTTCGACAGGTTCCATACATTTACGGAACAAGTCCATACACAGTTC 7248 || || | | | |||| || || | |||||| ||| | | || Sbjct 663284 TTCAAGACGCGCT----CGACGGGGTCGAGGGTCGAGCGGAAC--GTCGCGGCGTTGATC 663231 Query 7249 --CTCAAAACGTGCACGGGTAATGGATGTATAGAAATCAACGCCGTCGTATAACGAATCA 7306 |||||| || ||||| | || || | |||| || ||| | | | | ||| || Sbjct 663230 TCCTCAAAGCGGGCACGCGAGATCGAGGCCGAGAAGTCCTGGCCCTGGAAGAGCGAGTCG 663171 Query 7307 ATTTCAATGGTTGTTTG--TGCCGTCGAAGATAACGTTCGCTTTGCGCGCTCACACGCCG 7364 | || | ||| || || || || || || | || ||||| || ||||| ||||||| Sbjct 663170 ACCTCGACGGTGGTCTGGGTGACG--GACGAGAGGGTGCGCTTGGCACGCTCGCACGCCG 663113 Query 7365 TTCGTAAACGACGAAGGGCACGCGGGTTACCGGAAATATCTTTCTTATGTTTACGTTTAA 7424 || | ||| || || || || | || || || || || ||| || || | || Sbjct 663112 AGCGGAGACGGCGGAGCGCGCGGGCGTCGCCCGAGATGTCGAGCTTGGTCTTGCGCTCAA 663053 Query 7425 ACTCTTCAGAGAAGTG-TCGAAGGAGTCTCGAATCGAAATCTTCACCACCCAAGTGTGTA 7483 |||| | |||||| |||| |||| | || || || ||||| || | ||| || Sbjct 663052 ACTCCTTCTTGAAGTGCTCGA-GGAGCGTGTTGTCAAAGTCCTCACCGCCGAGGTGGGTG 662994 Query 7484 TCCCCCGCGGTCGCTTTGACTTCAAAGATACCTCCTTCAATGTTTAACAACGAAACATCA 7543 || || || ||||| ||||| |||||| || || || | | ||| ||||| Sbjct 662993 TCTCCGGCCGTCGCCTTGACGGCAAAGACGCCACCGGTGATCGAGAGGAGCGAGACATCG 662934 Query 7544 AACGTACCACCACCCAGGTCAAAAATGAGTACGTTCGTATCGT-------CGTCTTTGTT 7596 ||||| || || || ||||| || ||||| || || | || | | ||| || Sbjct 662933 AACGTGCCGCCTCCGAGGTCGAAGATGAGGACAATCTTCTCCTTCTTCGACTTCTCGGTC 662874 Query 7597 --CTTATCGAGACCGTACGCGATAGCCGCCGCCGTTGGTTCATTAATAATACGAAGACAG 7654 || |||||||||||||||| || ||||| || || || || || || || || | Sbjct 662873 GCCTCGCCGAGACCGTACGCGATGGCAGCCGCGGTGGGCTCGTTGATGATGCGGAGGACG 662814 Query 7655 TTCAGGCCAGCAATAGTTGCCGCATCTTTCGTCGCTTGTCGTTGCGAATCGTTAAAGTAG 7714 | |||||||| || || | || || || |||| | || ||||| ||||| |||||| Sbjct 662813 TCGAGGCCAGCGATCGTGCCAGCGTCCTTGGTCGAGAGACGCTGCGAGTCGTTGAAGTAG 662754 Query 7715 GCCGGGACCGTTACGACCGCGTCCGTGACTTTCTTACCGAGATACGATTCCGCGATATCT 7774 || |||||||| | ||| || | | |||| | ||| || | | | || || | || Sbjct 662753 GCAGGGACCGTGATGACGGCCTTCTTGACCTCCTTGCCAATCTTGGCCTCGGCCGTCTCC 662694 Query 7775 TTCATTTTGGTAAGAACCATCGATGAAATCTC 7806 || | |||| |||||||| | || ||||| Sbjct 662693 TTGAGCTTGGAGAGAACCATGGCCGAGATCTC 662662 >seq1 Length=2216040 Score = 132 bits (146), Expect = 6e-26 Identities = 420/647 (65%), Gaps = 12/647 (2%) Strand=Plus/Minus Query 7457 TCGAAATCTTCACCACCCAAGTGTGTATCCCCCGCGGTCGCTTTGACTTCAAAGATACCT 7516 || || || || || || | ||| || || || ||||| || |||||| || | ||| Sbjct 1463089 TCAAAGTCCTCGCCGCCGAGGTGGGTGTCACCGGCGGTGGCGAGGACTTCGAACACACCG 1463030 Query 7517 CCTTCAATGTTTAACAACGAAACATCAAACGTACCACCACCCAGGTCAAAAATGAGTACG 7576 | || || | | ||| || || ||||| || || || ||||| | | || | | Sbjct 1463029 TCGTCGATCGAGAGGAGCGAGACGTCGAACGTGCCGCCGCCGAGGTCGTAGACGATGATG 1462970 Query 7577 TTCGTATCGTCGTCTTTGTTCTTATCGAGACCGTACGCGATAGCCGCCGCCGTTGGTTCA 7636 || ||| || | | |||| ||||| ||||||||||| || || ||||| || || Sbjct 1462969 TTGCGCTCGCCGCC---GGTCTTGTCGAGTCCGTACGCGATCGCGGCGGCCGTCGGCTCG 1462913 Query 7637 TTAATAATACGAAGACAGTTCAGGCCAGCAATAGTTGCCGCATCTTTCGTCGCTTGTCGT 7696 || | | || || ||| || || || || || | || || || || || || || Sbjct 1462912 TTGACGACGCGGAGGACGTTGAGACCCGCGATCGTGCCGGCGTCCTTGGTGGCCTGGCGC 1462853 Query 7697 TGCGAATCGTTAAAGTAGGCCGGGACCGTTACGACCGCGTCCGTGACTTTCTTACCGAGA 7756 || | ||||| |||||||||||||| || ||||| |||| |||||| || | ||||| Sbjct 1462852 TGGGCGTCGTTGAAGTAGGCCGGGACGGTGACGACGGCGTGCGTGACCTTGGTTCCGAGG 1462793 Query 7757 TACGATTCCGCGATATCTTTCATTTTGGTAAGAACCATCGATGAAATCTCTTCAGCCGCA 7816 |||| || || | || ||||| ||| || ||||| | || | ||| || | | Sbjct 1462792 TACGTCTCGGCCGTCTCCTTCATCTTGCCGAGGACCATGGCCGAGACCTCCTCGGGGGTG 1462733 Query 7817 AA---CTGTTTCGTTTCACCGTTAAAATCAACTTCAATCATGGGTTTATCCGCAGCACCG 7873 || || || | || ||| | | || || |||| ||| | | || | ||| Sbjct 1462732 AATGTCTTGCTCTTGTCGCCG---ACCTTGACCTCGATCACGGGCTGCTTCGTCGAGCCG 1462676 Query 7874 GGGATAACCTTATACGACCAATCTTTCATATCGTCTTGGACCTGTTGGTCCGAAAACTTT 7933 | | ||||| ||| | | |||| ||| ||||||| | ||| ||| Sbjct 1462675 GCCTTGACCTTGAACGGGTAGTGCGTCATGTCGCGCTGGACCTCCTTGTCGTCAAAGCGG 1462616 Query 7934 CTTCCGATAAGACGCTTTGCATCAAAAACTGTGTTTTTGGGGTTCATGGCTGTTTGGTTC 7993 | |||||| || ||||| || ||||| | ||||| | |||||| ||| |||||| Sbjct 1462615 CGTCCGATCAGGCGCTTGGCGTCAAAGATCGTGTTGGTCGGGTTCGAGGCGTACTGGTTC 1462556 Query 7994 TTCGCCGCGTCCCCGATAAGACGTT--CATTATTTTCCGTA-AACGCGACGTACGATGGG 8050 || || ||||| ||||| || || | | | | | || |||||||| || ||| Sbjct 1462555 TTGGCGGCGTCGCCGATCAGGCGCTCGCCGGACGAGGGGGAGAAGGCGACGTAGGACGGG 1462496 Query 8051 GTCGTTCGATTCCCTTGGTCGTTCGCAATAATTTCTACGCGGTCGTT 8097 || | || || || |||||||| || || || || ||||| |||| Sbjct 1462495 GTGATGCGGTTGCCCTGGTCGTTGGCGATGATCTCGACGCGACCGTT 1462449 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 635132561825200