Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhodotorula_20toruloides_20[genbank_20GCA_5F001255795.1_202015-07- 26] 30 sequences; 20,810,536 total letters Query= NC_019491.1 Length=291144 Score E Sequences producing significant alignments: (Bits) Value seq15 161 2e-34 seq5 141 2e-28 >seq15 Length=702288 Score = 161 bits (178), Expect = 2e-34 Identities = 532/817 (65%), Gaps = 24/817 (3%) Strand=Plus/Minus Query 213599 GTTGGCAGAATCCTTGTAGAGCATGTAGGGGGACCCGGTCTCTAGCTGGGACACCAGTAT 213658 |||||| | |||||||||||||||| ||||| || ||||| | ||||| | | || | Sbjct 566296 GTTGGCGGCATCCTTGTAGAGCATGAAGGGGTTGCCCGTCTCGACCTGGGCCTCGAGGAC 566237 Query 213659 CTGGCTCCAGAGGTACCTGGCCTTGACCACCCGCCTGACAGCTCCGGGCGTAGCCTCGTA 213718 | |||||| | | ||| || ||| || | || | | |||||| Sbjct 566236 GGCGTACCAGAGCTTCTGGGCGGGGATGGTGCGCTTGGCGCGACCCTCCTT---CTCGTA 566180 Query 213719 CTGTTCGTAGAGCTCGTTGAATTCGTGGCCCCAGACCCTGTCCAGTCCCGGACAGGATGC 213778 || ||| ||||||| ||||| |||| ||| ||||| || || || || || Sbjct 566179 CTTTTCAAAGAGCTCCTTGAACTCGTCGCCGTAGACCTCGTGGAGACCGGGCGCCTCGGC 566120 Query 213779 GGGACACATGAGGCTCCAGTCCCCGTCAT-CTCTGACTCTCTGCATGAACAGGTCCGGGA 213837 || || | |||| |||||| |||| | ||| ||| | || |||||| ||||| |||| Sbjct 566119 CGGGCAGAAGAGGGGCCAGTCGCCGTTCTGCTC-GACACGCTCCATGAAGAGGTCGGGGA 566061 Query 213838 CCCACAGCGCGGTGAACAGGTCCCTGGTCCTCCTCTCGTCCACTCCAGAGTTTTTGCGCA 213897 ||| || || ||||| ||| | | | ||| ||| || ||| ||||| | Sbjct 566060 TCCAAAGGGCAAAGAACAAGTCGCGCGCGCGGACCTCCTCCTTGCCGTGGTTCTTGCGGA 566001 Query 213898 GATCTAGAAAGTCAAAGATGTCCGCGTGCCACGGCTCCATGTAGATGGCAAAGGCGCCCG 213957 | || || || || |||||||| |||||||||||||| | ||||||||| || ||||||| Sbjct 566000 GGTCGAGGAACTCGAAGATGTCGGCGTGCCACGGCTCGAGGTAGATGGCGAACGCGCCCG 565941 Query 213958 ---GCCTCTTGCCGCCCTGGTCCACCAGCCTGGCCACCATGTTGAAGATGCGCAGGACGG 214014 || | ||||| |||||||| || | ||| ||||| | | ||| || | || Sbjct 565940 GGCGCTTGTTGCCTCCCTGGTCGACGTAGCGCGCCGTGTTGTTGTACACGCGGAGCATGG 565881 Query 214015 GTACCAGCCCGTTGGACTGTCCGTTGGTTCCCGCTATATACGAGCCGGAGGCCCTCAGGT 214074 | | | ||||| || | ||||| || || || || ||||| |||| || | | || Sbjct 565880 GGATGATGCCGTTCGAGTAGCCGTTCGTGCCGGCGATGTACGAACCGGTCGCGCGGATGT 565821 Query 214075 TGCTCATGGAGAGCCCTATGCCACCGGCGTACTTGGAGATCATGGCGCAGCGCCTCACAG 214134 || || ||||| || ||||| || || ||||||||| | ||||| | | | | Sbjct 565820 TGTGGATCGAGAGGCCGATGCCGCCTGCCGTCTTGGAGATGAGCGCGCACGTCTTGAGCG 565761 Query 214135 TCTCCATGATGCCGGCCATGCTGTCATCTGTGAGGTTCAGCAAGAAGCAGCTCGAGAGCT 214194 | || |||||| | || ||| || | | | | | |||||| |||||||| Sbjct 565760 TGTCGTAGATGCCCTCGATCGAGTCGTCCTTCATCGTGACGAGGAAGCACGACGAGAGCT 565701 Query 214195 GGGGCCTGGACGAGCCAGAGTTGAAAAGCGTGGGGCTGGCATGGATCATAAACTTGTTAG 214254 | || | || ||| | |||||| ||||| || || || | | || | | Sbjct 565700 GCGGGTGCGGCGTGCCGGCGTTGAAGAGCGTCGGCGACGCGTGCGTAAAGTACCGCTCCG 565641 Query 214255 AGAGGAGCCTGTAGGTCTCCAGGACTGAGGGG---ATGTCGTGCTTGTGGATCTGTAGAG 214311 | | ||| |||| ||||| || | | || ||||||| ||||| || || Sbjct 565640 ACATGAGGTTGTACGTCTC---GATCGCGCGGTCAATGTCGTCGCCGTGGA--TGCCGAC 565586 Query 214312 CGC-AC-CTCATCAGCATGTGCTGGGGCCTCTCTATGGGTCCTTTGGGGCC---CTTGAG 214366 ||| || | ||| ||||||||||| || | ||| || | ||| | | ||| Sbjct 565585 CGCGACGCGCATGAGCATGTGCTGCGGTCGCTC---GGCCACCTTGCCGTCGAGGCGGAG 565529 Query 214367 CAGGTAGGAGCGCTCCAGAGTCTTGAACCCAAAGTAG 214403 |||||| || ||||| || |||||||| || |||||| Sbjct 565528 CAGGTACGACCGCTCGAGCGTCTTGAAGCCGAAGTAG 565492 Score = 109 bits (120), Expect = 1e-18 Identities = 376/583 (64%), Gaps = 34/583 (6%) Strand=Plus/Minus Query 212577 GCAGCCTTGGTGCGTAGATAGTACATGCCGGTCTTTAGGCCCTTGCCCCAGCCGTGCATG 212636 ||||| |||||| || ||||||||||| ||||| || || || ||| |||| | | Sbjct 567439 GCAGCGCGGGTGCGGAGGTAGTACATGCCCGTCTTGAGACCTTTCTTCCATCCGTAGAAG 567380 Query 212637 TGCATTGCTGTGAGTTTCTTCAGCTTAATATTCTGGTCATCCTCGTGGCCCAGATGTAGG 212696 ||||| | ||||| | | || ||||| | || | || || | | Sbjct 567379 TGCATCGACGTGAGCTGCGCCA-----------TGGTCGGCGACGAG----AGGTGGACG 567335 Query 212697 TTCAGGGACTGACTCTGGTCTATGAATGGGGCCCTGTCAGCGGCCATGTCTATGATATCT 212756 || || ||||| |||||| ||||| | | | | ||| ||||| | ||| |||| | Sbjct 567334 TTGAGCGACTGCGACTGGTCGATGAACGCGCCGCGGTCGGCGGCGAGGTCGATGACGACC 567275 Query 212757 CTCTGGGAGAGCTCCCACACGGTCTTGAAGATTTCTTTGAGGTCCTCTGGGAAGCCGGGG 212816 | || |||| |||||||||||||||| |||| ||||| || || |||| ||||||| Sbjct 567274 TTTTGCGAGATCTCCCACACGGTCTTGTAGATGCGCTTGAGCTCGTCGGGGATGCCGGGG 567215 Query 212817 ATGTTCTGCACAGACCCCCTGTG---TATGGTCAGCTGCAGGCGCATGTCCTCGTTCCAG 212873 | |||||| | || || |||| ||| || | | ||| | |||||||| Sbjct 567214 ACGTTCTGGATCGAGCCGTTGTGCGCGATGATCGTGTTC---TTCATCGCGTCGTTCCAC 567158 Query 212874 AGGCCCCTGGTC-TCCAGGCACTTGACCAGGTGAGGGTTGACTATCTGGAAGTCACCTGA 212932 ||||| | |||| | ||| || || |||||||| | |||||| || || | Sbjct 567157 AGGCCGC-GGTCGACGAGGTCGCGGAGGAGCCAGGGGTTGACGACCTGGAACTCGCCGGC 567099 Query 212933 GAGCACCCTCCTCTGGTAAAAGTTTGAAGTGTAGGGCTCGATGCTCTCGTTGTTCCCCAG 212992 ||| || | | ||| | ||| || ||||| ||||||| ||||||| || || Sbjct 567098 GAGGACGCGGCGGGTGTAGATGTTGGACGTGTACGGCTCGAACGCCTCGTTGAAGCCGAG 567039 Query 212993 AATCTGTGCAGTGCTGGCTGTGGGCATGGGAGCCACCAGGAGACTGTTCCTCACTCCGTG 213052 ||||| || ||| || ||||| || || || ||| ||| | | ||||| Sbjct 567038 GATCTGGCTGGTCGAGGCGGTAGGCATCGGCGCGCACACGAGCGAGTTGCGGATGCCGTG 566979 Query 213053 CTCGCCGATGAGGCGCCGAAGCTCTGCCCAGTCCCATCTGCCAGACAGGTCC-TCGTCCT 213111 || | || | | ||| |||||||||| |||||||| ||| | Sbjct 566978 CTGCGCAATCTTCTCCTTCAACTCGGCCCAGTCCC---------ACAGGTCCGTCG-GCG 566929 Query 213112 TCACGTTCCACATGTCAAACTGCAAGATGCCTTTGCTCACGGG 213154 | |||||||||| || ||||||||| ||| | |||| |||| Sbjct 566928 TGACGTTCCACAGATCGTACTGCAAGAGGCCGTGGCTCGCGGG 566886 Score = 89.7 bits (98), Expect = 1e-12 Identities = 102/137 (74%), Gaps = 0/137 (0%) Strand=Plus/Minus Query 48454 GATCTGGAACCCGTAGAAGGCCCTGGCCTCAAACACCTGCACTTCTGTGGAGAATCTCTC 48513 ||||||||| |||||||| | ||||| | |||||| || | ||||| ||||| Sbjct 257937 GATCTGGAAACCGTAGAAACAGCGCGCCTCGGCAATCTGCACCTCCGCCGAGAACCTCTC 257878 Query 48514 CAGCAGATTCTCATTGACTATCCCATCTGAAGCAGCAAAGAAGGCAAGGACATGTTTAAG 48573 || || ||||| ||||| || || || ||||| || |||||||||||||| || | Sbjct 257877 CACCAAGTTCTCGTTGACGATGCCGTCCGAAGCGGCGAAGAAGGCAAGGACGTGCGAGAT 257818 Query 48574 GAAATGGCGCTCGTTGT 48590 ||| || |||||||||| Sbjct 257817 GAAGTGTCGCTCGTTGT 257801 Score = 86.0 bits (94), Expect = 1e-11 Identities = 119/163 (73%), Gaps = 4/163 (2%) Strand=Plus/Minus Query 48191 CCAGGCATGACCCCCCTCTGTTTGAGCCAGAAAATTGCCGCGAAAGAGCCAGAGAAGAAG 48250 || ||||| | || | || ||| |||||||| || | ||||| ||||| ||||||||| Sbjct 258317 CCGGGCATCAAGCCACGCTTTTTAAGCCAGAAGATCGAGGCGAACGAGCCGGAGAAGAAG 258258 Query 48251 ATGCCCTCCACTGCCGCGAACGCGGTGAGCCTCTCTCCG-AAAGA-AGCGTTCTTGTCTG 48308 |||||||| ||||| ||||| ||| || || |||| ||| | ||| ||| | Sbjct 258257 ATGCCCTCGACTGCGGCGAAAGCGACCAG--TCGTTCCGCAAACACGGCGCGAGGGTCCG 258200 Query 48309 AGATCCAGGAAAGCGCCCAGTCTGCCTTCTTCTTGATGCATGG 48351 ||||||| |||||||| || |||||||| |||||| || Sbjct 258199 AGATCCATCGCAGCGCCCACTCGGCCTTCTTGGCGATGCAGGG 258157 >seq5 Length=1666694 Score = 141 bits (156), Expect = 2e-28 Identities = 138/176 (78%), Gaps = 4/176 (2%) Strand=Plus/Plus Query 48178 GGAGAAGCAGAGACCAGGCATGACCCCCCTCTGTTTGAGCCAGAAAATTGCCGCGAAAGA 48237 ||||||| ||| || ||||| | || | || ||||||||||| || | |||||| || Sbjct 1125371 GGAGAAGGTGAGTCCGGGCATCAAGCCGCGCTTCTTGAGCCAGAAGATGGACGCGAACGA 1125430 Query 48238 GCCAGAGAAGAAGATGCCCTCCACTGCCGCGAACGCGGTGAGCCTCTCTCCGA--AAGAA 48295 ||| ||||||||||||||||| || || ||||||||| ||| | ||| |||| | | | Sbjct 1125431 GCCGGAGAAGAAGATGCCCTCGACGGCGGCGAACGCGACGAGACGCTCGCCGAAGACGGA 1125490 Query 48296 GCGTTCTTGTCTGAGATCCAGGAAAGCGCCCAGTCTGCCTTCTTCTTGATGCATGG 48351 ||| || ||| |||||||||| |||||||| || |||||||||| |||||| || Sbjct 1125491 GCGGTC--GTCCGAGATCCAGGTGAGCGCCCACTCGGCCTTCTTCTGGATGCAAGG 1125544 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 931532450675200