Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhodotorula_20toruloides_20[genbank_20GCA_5F001255795.1_202015-07- 26] 30 sequences; 20,810,536 total letters Query= NC_020852.1 Length=186468 Score E Sequences producing significant alignments: (Bits) Value seq15 131 2e-25 seq2 91.5 2e-13 >seq15 Length=702288 Score = 131 bits (144), Expect = 2e-25 Identities = 479/737 (65%), Gaps = 15/737 (2%) Strand=Plus/Plus Query 75212 CCACAGTACATGTTCATGCGGGTCGCAATCGGCATCCACGGGGAAGACATTGATTCTGTC 75271 || ||| ||||| ||||||| ||||| ||||||||||||| || |||||||| | Sbjct 565559 CCGCAGCACATGCTCATGCGCGTCGCGGTCGGCATCCACGGCGACGACATTGACCGCGCG 565618 Query 75272 TTGGAGACATACGACAAGATGTCCCA-AGGTATGTTCATTCACGCAACACCAACCCTCTT 75330 | ||||| ||| || ||||| | |||| || | ||||| | || || ||||| Sbjct 565619 ATCGAGACGTACAACCTCATGTCGGAGCGGTA-CTTTACGCACGCGTCGCCGACGCTCTT 565677 Query 75331 CAATGCTGGTACACCAAGACCGCAGATGTCCAGTTGCTTCCTTATCGCCAACAAGGAGGA 75390 ||| || || || || |||||| | || |||||||| || | | ||||| || Sbjct 565678 CAACGCCGGCACGCCGCACCCGCAGCTCTCGTCGTGCTTCCTCGTCACGATGAAGGACGA 565737 Query 75391 CTCAATCAACGGTATCTATGGAACTCTTACGGAGTGTGCGCAAATCTCAAAGTGGGCTGG 75450 ||| ||| | || ||||| | || || | | ||| |||| ||||| ||| ||| || Sbjct 565738 CTCGATCGAGGGCATCTACGACACGCTCAAGACGTGCGCGCTCATCTCCAAGACGGCAGG 565797 Query 75451 GGGTATTGGGATGCACATCCATGATGTGAGAGCCAATAAATCTCGTA-TTCG-GGGGACA 75508 || || || | ||||| | | | || | ||||| ||| || || Sbjct 565798 CGGCATCGGCCTCTCGATCCACAACATCCGCGCGA--CCGGTTCGTACATCGCCGGCACG 565855 Query 75509 AATGGTCAATCAGATGGTATTATTCCAATGCTTCGCGTATTTAACGCCACAGCGCGCTAT 75568 || || | || | || || || || ||||| ||||| | ||| ||| |||||||| Sbjct 565856 AACGGCTACTCGAACGGCATCATCCCCATGCTCCGCGTGTACAACAACACGGCGCGCTAC 565915 Query 75569 GTAAATCAAGCGGGGC----GTCGCAAGGGGTCCATCGCGGTCTACTTGGAACCATGGCA 75624 || | | || | ||| ||| ||| | |||| ||||| | || || ||||| Sbjct 565916 GTCGA-CCAGGGAGGCAACAAGCGCCCGGGCGCGTTCGCCATCTACCTCGAGCCGTGGCA 565974 Query 75625 TGCCGATATCATGGAGTTCCTTGAGTTACGACTCAACCAAGGTGACGAAGAGGCTCGGTG 75684 ||||| ||| | |||||||| || | || ||||| || | || |||| || Sbjct 565975 CGCCGACATCTTCGAGTTCCTCGACCTCCGCAAGAACCACGGCAAGGAGGAGGTCCGCGC 566034 Query 75685 TAGAGATCTCTTTTCATCCCTGTGGATTCCAGACCTTTTCATGAAGCGGGTTGAGGAGGG 75744 | || | || | |||| ||||| || ||||| |||||| |||| || ||| || Sbjct 566035 GCGCGACTTGTTCTTTGCCCTTTGGATCCCCGACCTCTTCATGGAGCGTGTCGAGCAGAA 566094 Query 75745 TGGTCAATGGTCTCTTTTCTGTCCAGACAAGGCACCAGGTCTCTCCGACGCGGTGGGTGA 75804 || | ||| | || ||||| || | | |||| || |||||| ||| | || || Sbjct 566095 CGGCGACTGGCCCCTCTTCTGCCCGGCCGAGGCGCCCGGTCTCCACGAGGTCTACGGCGA 566154 Query 75805 GGAGTTTGAAGCCCTCTACACAAAGTATGAAGAGGAGGGTAGAGCCAATGCG-ACTGTAC 75863 ||||| | | |||| |||||| || |||||||| | ||||| ||| || | | Sbjct 566155 CGAGTTCAAGGAGCTCTTTGAAAAGTACGAGAAGGAGGGTCGCGCCAA-GCGCACCATCC 566213 Query 75864 CAGCCGCCGATG-TTTGGAAGGCTATTCTCAAATCACAGACGGAGACTGGAACACCATAT 75922 | ||| | || | | ||| | || | ||| | | ||| ||||| || | || | Sbjct 566214 CCGCC-CAGAAGCTCTGGTACGCCGTCCTCGAGGCCCAGGTCGAGACGGGCAACCCCTTC 566272 Query 75923 ATGCTTTACAAGGATGC 75939 ||||| ||||||||||| Sbjct 566273 ATGCTCTACAAGGATGC 566289 >seq2 Length=1972963 Score = 91.5 bits (100), Expect = 2e-13 Identities = 165/236 (70%), Gaps = 4/236 (2%) Strand=Plus/Plus Query 175276 GGTGCCAAGATCCCCCGAGGCGCCCTTCTCGCGGGTAAGCCAGGTACGGGAAAGACCCTC 175335 |||||||||||||| || |||||| | ||| | || || ||||| || ||||| ||| Sbjct 1712138 GGTGCCAAGATCCCTCGCGGCGCCATCCTCTCCGGCCCTCCCGGTACCGGCAAGACGCTC 1712197 Query 175336 CTCGCCCGAGCCATCGCGGGTGAATCAAATGTCCCATTCATC-CAGTGCTCTGCCGCAAA 175394 |||||| ||| | ||| || ||| | ||||| ||| || | || ||| | | | | Sbjct 1712198 CTCGCCAAAGCGACCGCAGGCGAAGCCGGCGTCCCCTTCCTCTCCGT-CTCCGGCTCCGA 1712256 Query 175395 CTTTGTGGAGATGTTTGTTGGTGTGGGTGCCAAAAGGGTTCGCGATCTCTTTGAAATCGC 175454 || || |||||||| || ||||| ||||||| | || ||||| || ||| | | Sbjct 1712257 GTTCGTCGAGATGTTCGTCGGTGTCGGTGCCAGTCGTGTCCGCGACCT-TTTCACCCAGG 1712315 Query 175455 CCGCGAA-AATCAACCATGTATTGTCTTCATTGATGAGATTGATGCGGTGGGCAAG 175509 || ||| || || || || ||||||| || |||||||| ||| | || ||| Sbjct 1712316 CCAAGAAGAACGCGCCGTGCATCATCTTCATCGACGAGATTGACGCGATCGGAAAG 1712371 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 596569376286400