Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhodotorula_20toruloides_20[genbank_20GCA_5F001255795.1_202015-07- 26] 30 sequences; 20,810,536 total letters Query= NC_020864.1 Length=205622 Score E Sequences producing significant alignments: (Bits) Value seq11 244 1e-59 seq3 167 3e-36 seq13 147 3e-30 seq2 107 3e-18 >seq11 Length=938730 Score = 244 bits (270), Expect = 1e-59 Identities = 847/1310 (65%), Gaps = 21/1310 (2%) Strand=Plus/Minus Query 195479 ACTGTCTTTGACGCGAAGCGTCTTATTGGTCGCAAGTTTTCGGATAAGAAAGTCCAAGAC 195538 || ||||| ||||| ||||| || || || ||||||||| | || | ||||| | Sbjct 727431 ACCGTCTTCGACGCCAAGCGCCTCATCGGACGCAAGTTTGCCGACGCCGAGGTCCAGTCC 727372 Query 195539 GATATAAAGGACTGGTCTTATGAAGTTGTTC--CCGGTGTGGCTGATAAGCCTATGATTA 195596 || || ||| ||||| | | | ||| | || | || ||| ||||| || || Sbjct 727371 GACATGAAGCACTGGCCGT-TCAAGGTCATCGACAAGTCGGGC----AAGCCCATCATCT 727317 Query 195597 ATGTTGAATTTCACGGTGAGAAGAAACAATTTGCTCCCGAAGAAATTTCGTCTATGGTGT 195656 || || | | || ||| |||| | || | ||||| || || ||||| ||||| Sbjct 727316 CGGTCGAGTACAAGGGCGAGCAGAAGGAGTTCACGCCCGAGGAGATCTCGTCGATGGTCC 727257 Query 195657 TGATTAAGATGAAGGAGACTGCGGAATCTTTCATGGGTAAAACTGTGAAAGATGCAGTTG 195716 | | |||||||||||||| || || | | | | || || || | || || | Sbjct 727256 TCCTCAAGATGAAGGAGACGGCCGAGGCCTACCTCGGCGGCACGGTCGCCAACGCCGTCG 727197 Query 195717 TGACTGTACCTGCTTACTTCAGTGATTCACAACGACAGGCGACAAAGGACGCTGCTGCT- 195775 | || || || || ||||||| || || || || ||||| || |||||||| | ||| Sbjct 727196 TCACCGTCCCCGCCTACTTCAACGACTCGCAGCGTCAGGCCACCAAGGACGC--CGGCTT 727139 Query 195776 -ATTGCGGGTCTAAACTGTCTTAGAATTATCAATGAACCAACAGCGGCTGCAATTGCTTA 195834 || |||| || ||| || | || ||||| || || || || || || || || || Sbjct 727138 GATCTCGGGCCTCAACGTCCTCCGCATCATCAACGAGCCCACCGCCGCCGCCATCGCGTA 727079 Query 195835 TGGTCTGGACAAGAACAAGGACGAAGATAAAAATGTATTGATCTTTGATCTCGGTGGTGG 195894 || || |||||||| || | || || || || | |||||||| | || || || Sbjct 727078 CGGCCTCGACAAGAAGTCCGAGGGCGAGAAGAACGTCCTCATCTTTGACTTGGGCGGCGG 727019 Query 195895 TACGTTTGATGTCTCACTTCTCAATATTGAAGGTGGTATATTCGAAGTAAAGGCTACTGC 195954 ||||| || ||||| || |||| || || | || || ||||| || ||||| ||||| Sbjct 727018 CACGTTCGACGTCTCGCTCCTCACGATCGAGGAGGGCATCTTCGAGGTCAAGGCGACTGC 726959 Query 195955 TGGTGATACTCATCTAGGTGGTGAAGATTTCGATGCACGTCTTCTCCGTCA-TTTGTCTG 196013 || || || || || || ||||| || || || || || || || |||||| | Sbjct 726958 CGGAGACACCCACCTCGGCGGTGAGGACTTTGACAACCGCCTCGTCAACCACTTTGTC-G 726900 Query 196014 ATGAGTTCCGTCGAAAGAATAAGAAAGATATTTC-TGGAAATCCTAGGGCTCTTCGTCGG 196072 |||||| || ||||| ||||| || | || | ||| || | || || || || Sbjct 726899 CCGAGTTCAAGCGCAAGAACAAGAAGGACCTCTCGTCGAACGCC-CGCGCCCTCCGCCGT 726841 Query 196073 CTTAGGACTGCATGTGAACGTGCCAAACGAACTCTCTCTTCTACGGCTCAAACAATGGTT 196132 || | || || || || || ||||| || || ||||| || | || || || | | Sbjct 726840 CTCCGCACCGCTTGCGAGCGCGCCAAGCGCACCCTCTCGTCGGCCGCCCAGACCACCATC 726781 Query 196133 GAGATTGATTCGTTGTTTGACGGAATTGACTTCTATACAACTATTACCCGTGCACGTTTT 196192 ||||| || ||| | || || || || |||||||| || | || ||||| || || || Sbjct 726780 GAGATCGACTCGCTCTTCGAGGGCATCGACTTCTACACCTCGATCACCCGCGCCCGCTTC 726721 Query 196193 GAAGAGTTAAACTCTGATTTGTTTAGGAAGTGTATGGAACCTGTTGAACAAGTACTTCGT 196252 || ||| | | || | || | | ||||| || || || | || || || Sbjct 726720 GAGGAGCTCTGCCAGGACCTCTTCCGCTCGACGATGGAGCCCGTCGAGAAGGTCCTCCGC 726661 Query 196253 GACGCAAAGATGGATAAGTCTAAGGTTGATGAAATTGTCCTTGTGGGAGGATCAACCCGT 196312 ||| | ||||| || ||| ||| | || |||||||| || || || || |||||| Sbjct 726660 GACTCGAAGATTGACAAGCAGTCGGTCCACGAGATTGTCCTCGTCGGCGGCTCGACCCGT 726601 Query 196313 ATTCCGAAGATTCAACAGATGCTTTCTAGCTTCTTCAATAATAAAGATTTAAACAAAACG 196372 || ||| | || || | | || ||||||| || || ||||| || Sbjct 726600 ATCCCGCGTGTCCAGAAGCTCGTCTCCGACTTCTTCGGCGGCAAGGAGCCCAACAAGTCG 726541 Query 196373 ATCAACCCGGATGAAGCAGTTGCTTATGGTGCGGCCGTTCAGGCTGCTATTCTCTCAGGT 196432 ||||||||||| || || || || || || || ||||| |||||||| || ||| | || Sbjct 726540 ATCAACCCGGACGAGGCCGTCGCGTACGGCGCCGCCGTCCAGGCTGCCATCCTCACCGG- 726482 Query 196433 GTTGACA---ATAATAACGTCCAAGATCTTCTGCTACTTGATGTTGCACCCGTATCCCTG 196489 |||| | || ||| || || || || || || || || || | || Sbjct 726481 --CGACACGTCCGAGAAGACCCAGGACCTCCTCCTCCTCGACGTCGCGCCTCTCTCGACC 726424 Query 196490 GGTCTTGAAACAGCGGGTGGTGTTATGACTAAAATTATTGATAGGAACACAACTATTCCG 196549 ||| | || || || || ||||| ||||| || | || | ||||| || | ||| Sbjct 726423 GGTATCGAGACCGCCGGCGGTGTCATGACCAAGCTCATCCCGCGCAACACGACCGTCCCG 726364 Query 196550 ACTAAGAAGGAACAAGTCTTTTCAACGTATTCCGATAATCAACCAGGTGTTCATATTCAA 196609 || |||||| | |||| || || || |||| || || || || || || || Sbjct 726363 ACGAAGAAGTCGGAGATCTTCTCGACCTACGCCGACAACCAGCCGGGCGTCTTGATCCAG 726304 Query 196610 GTATATGAAGGAGAACGCTCCCGTGCAAAGGATAACCATCTACTTGGAACTTTCGATTTG 196669 || || ||||| ||||| | || | ||||| ||| | || || || | || || | Sbjct 726303 GTCTACGAAGGTGAACGTGCACGCACCAAGGACAACAACCTCCTCGGCAAGTTTGAGCTC 726244 Query 196670 ACGGGGATTCCAGCTGCACCCAGAGGTGTTCCACAGATTAATGTTTGCTTCGATATAGAC 196729 |||| || || | || ||| | || || || ||||| | || |||||| || ||| Sbjct 726243 TCGGGCATCCCCCCCGCGCCCCGCGGCGTCCCCCAGATCGAGGTCACCTTCGACATCGAC 726184 Query 196730 GCAAATGGAATTCTAAACGTCACAGCTGAGGACAAGGCTTCTGGCAAATC 196779 || || || || || |||||| | || ||||||| | | ||||| || Sbjct 726183 GCCAACGGCATCCTCAACGTCTCGGCCTCGGACAAGACCACCGGCAAGTC 726134 >seq3 Length=1857496 Score = 167 bits (184), Expect = 3e-36 Identities = 173/227 (76%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 171862 ATGCAAATCTTTGTGAAAACCCTTACTGGAAAAACTATCACCCTCGAGGTTGAGTCGTCA 171921 ||||| ||||| || || ||||| || || || || |||||||||||||| ||||| || Sbjct 877370 ATGCAGATCTTCGTCAAGACCCTCACCGGCAAGACCATCACCCTCGAGGTCGAGTCTTCG 877429 Query 171922 GACACAATCGATAACATCAAAGCCAAGATTCAAGATAAGGAAGGCATTCCACCCGATCAG 171981 ||||| ||||| ||| |||| ||||||||||| || ||||| || || || ||||| ||| Sbjct 877430 GACACCATCGACAACGTCAAGGCCAAGATTCAGGACAAGGAGGGAATCCCTCCCGACCAG 877489 Query 171982 CAACGACTTATTTTTGCTGGTAAACAGCTTGAAGATGGACGTACCCTCGCTGATTACAAC 172041 || || | || || || || || |||||||| || || || || ||| || |||||| Sbjct 877490 CAGCGCTTGATCTTCGCGGGCAAGCAGCTTGAGGACGGTCGCACGCTCAGCGACTACAAC 877549 Query 172042 GTTCAAAAGGAGTCTACTCTACACCTTGTTCTAAGGCTTCGGGGTGG 172088 | || ||||||||||| || || || || | ||| | || ||||| Sbjct 877550 ATCCAGAAGGAGTCTACACTCCATCTGGTGTTGAGGTTGCGCGGTGG 877596 Score = 129 bits (142), Expect = 8e-25 Identities = 134/176 (76%), Gaps = 0/176 (0%) Strand=Plus/Plus Query 171898 ATCACCCTCGAGGTTGAGTCGTCAGACACAATCGATAACATCAAAGCCAAGATTCAAGAT 171957 ||||| |||||||| |||||||| ||||| ||||| ||| |||| ||||||||||| ||| Sbjct 877701 ATCACTCTCGAGGTCGAGTCGTCCGACACCATCGACAACGTCAAGGCCAAGATTCAGGAT 877760 Query 171958 AAGGAAGGCATTCCACCCGATCAGCAACGACTTATTTTTGCTGGTAAACAGCTTGAAGAT 172017 ||||| || || || ||||| || || || | || || || || || ||||| || || Sbjct 877761 AAGGAGGGAATCCCTCCCGACCAACAGCGCTTGATCTTCGCGGGGAAGCAGCTCGAGGAC 877820 Query 172018 GGACGTACCCTCGCTGATTACAACGTTCAAAAGGAGTCTACTCTACACCTTGTTCT 172073 || ||||| || | ||||| || | || || ||||| || || ||||| || || Sbjct 877821 GGTCGTACTCTTTCGGATTATAATATCCAGAAAGAGTCGACCCTCCACCTCGTGCT 877876 >seq13 Length=784862 Score = 147 bits (162), Expect = 3e-30 Identities = 138/176 (78%), Gaps = 0/176 (0%) Strand=Plus/Minus Query 171898 ATCACCCTCGAGGTTGAGTCGTCAGACACAATCGATAACATCAAAGCCAAGATTCAAGAT 171957 |||||||||||||| |||||||| ||||| ||||| ||| |||| |||||||| || || Sbjct 701647 ATCACCCTCGAGGTCGAGTCGTCGGACACGATCGACAACGTCAAGGCCAAGATCCAGGAC 701588 Query 171958 AAGGAAGGCATTCCACCCGATCAGCAACGACTTATTTTTGCTGGTAAACAGCTTGAAGAT 172017 ||||| ||||| || || || ||||| || || || || || || || ||||| || || Sbjct 701587 AAGGAGGGCATCCCCCCTGACCAGCAGCGCCTCATCTTCGCCGGCAAGCAGCTCGAGGAC 701528 Query 172018 GGACGTACCCTCGCTGATTACAACGTTCAAAAGGAGTCTACTCTACACCTTGTTCT 172073 || || |||||| | || |||||| | || |||||||| || || ||||| || || Sbjct 701527 GGCCGCACCCTCTCGGACTACAACATCCAGAAGGAGTCGACCCTTCACCTCGTCCT 701472 >seq2 Length=1972963 Score = 107 bits (118), Expect = 3e-18 Identities = 260/384 (68%), Gaps = 11/384 (3%) Strand=Plus/Plus Query 198477 GCTAAGGATGAGCTCGAGGAGATTGTTGATTTTCTTAAAAACCCCGAAAAGTACTATGGA 198536 || || || ||| || |||| | || | || || || ||||||||| | ||| | | Sbjct 1712075 GCGAAAGAGGAGATCATGGAGTTCGTCAAGTTCCTCAAGAACCCCGAACACTACGAGCGC 1712134 Query 198537 AGTGGTGCCCGAATCCCACGTGGTGCTCTTCTCGCCGGTGCCCCGGGTACTGGTAAAACC 198596 |||||| ||||| || || || | ||| |||| | || ||||| || || || Sbjct 1712135 CTCGGTGCCAAGATCCCTCGCGGCGCCATCCTCTCCGGCCCTCCCGGTACCGGCAAGACG 1712194 Query 198597 CTTCTAGCTCGTGCTATCGCGGGTGAATCGAGTGTCCCCTTTCT-TCAGTGCTCCG-CGG 198654 || || || || | ||| || ||| | | |||||||| || || || ||||| | Sbjct 1712195 CTCCTCGCCAAAGCGACCGCAGGCGAAGCCGGCGTCCCCTTCCTCTCCGT-CTCCGGCTC 1712253 Query 198655 CGAGTTTCATCGAGATGTTCGTTGGTGTTGGTGCTAAGCGCGTCCGGGAACTCTTTGAGC 198714 |||||| | ||||||||||||| ||||| ||||| | || ||||| || || ||| | | Sbjct 1712254 CGAGTT-CGTCGAGATGTTCGTCGGTGTCGGTGCCAGTCGTGTCCGCGACCT-TTTCACC 1712311 Query 198715 AAGCACGTGAA-AATCAACCATGTATCATCTTCATTGATGAGATTGACGCTGTTGGTAAG 198773 || | ||| || || || ||||||||||| || ||||||||||| | || ||| Sbjct 1712312 CAGGCCAAGAAGAACGCGCCGTGCATCATCTTCATCGACGAGATTGACGCGATCGGAAAG 1712371 Query 198774 AAGCGTG----GTGGAACTACTACACCTGGTAATGATGAGCGTGAGCAGACGATTAACCA 198829 |||| | | | | | | | || || || ||||| ||| |||| | ||||| Sbjct 1712372 GCCCGTGGAAAGGGCGGCCAGTTCGGC-GGCAACGACGAGCGCGAGTCGACGCTCAACCA 1712430 Query 198830 GCTTCTCACTGAGATGGATGGTTT 198853 ||| ||| |||||||| || || Sbjct 1712431 GCTCCTCGTCGAGATGGACGGCTT 1712454 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 657862153301600